Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016701

Physical Location & Seq

Genomic Coordinates Forward (+)

14721020 .. 14723164

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTGAGGCTTGCGGCGAAGAGACTTCTCCAAGGGGGGCGGCTAGGGTCACATGAGGCTCAGTCACCGGCGGTCCTGAGCCTGACACGTTTTTACCATGAGAGGGTGGTGGACCACTACGATAACCCGCGCAACGTCGGTTCGTTCGACAAGCATGATCCTACCGTGGGCACGGGACTCGTCGGTGCGCCCGCTTGTGGCGATGTGATGAAGCTCCAGATTAAGGTCGATGACAGCACGGGAAAGATTGTTGATGCTTGCTTCAAGACCTTTGGCTGTGGATCGGCCATTGCCTCTTCTTCTGTCGCTACTGAATGGGTGAAGGGGAAACAAATGGAGGAAGTCTTGACTATTAAGAACACAGAGATTGCAAAACATCTTTCTCTTCCTCCTGTTAAGCTTCACTGTAGCATGCTCGCTGAGGATGCTATCAAGGCAGCTGTTAAAGATTATCAGGCCAAGCAAACCAAATCAAATGGCAGTACAGAGGCAACTCCTGTTGAGAAGGCTGCTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

174

Amino Acids

18.52

Weight (kDa)

8.65

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22220
fragaria_vesca	FvH4_5g05360
malus_domestica	MD06G1173200.v1.1 MD14G1179700.v1.1
prunus_persica	Prupe.5G172700_v2.0.a1
pyrus_communis	pycom06g15430 pycom14g14950
rosa_chinensis	RchiOBHm_Chr7g0193471
rosa_multiflora	Rmu_sc0012783.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262070
rosa_rugosa	Rorug07G0009600
rosa_samantha	Rh7BG136700 Rh7DG137900
rosa_wichuraiana	Rw7G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	5 cut(s)	14, 40, 71, 128, 192
AclWI	GGATC	2 cut(s)	152, 289
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	4 cut(s)	103, 167, 197, 223
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	3 cut(s)	214, 400, 440
AluI	AGCT	3 cut(s)	214, 400, 440
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	2 cut(s)	152, 289
AoxI	GGCC	2 cut(s)	285, 456
ApeKI	GCWGC	2 cut(s)	437, 509
AspLEI	GCGC	2 cut(s)	132, 190
AspS9I	GGNCC	2 cut(s)	73, 112
AsuHPI	GGTGA	2 cut(s)	57, 331
AvaII	GGWCC	2 cut(s)	73, 112
BaeGI	GKGCMC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	449, 496
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	4 cut(s)	15, 41, 438, 510
BlsI	GCNGC	4 cut(s)	16, 42, 439, 511
Bme18I	GGWCC	2 cut(s)	73, 112
BmgT120I	GGNCC	2 cut(s)	73, 112
BmsI	GCATC	2 cut(s)	244, 415
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	2 cut(s)	77, 420
BsaJI	CCNNGG	2 cut(s)	31, 165
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 167, 197, 223
Bse118I	RCCGGY	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	31, 165
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	4 cut(s)	103, 167, 197, 223
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	68, 74, 411
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	449, 496
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	287, 458
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	4 cut(s)	103, 167, 197, 223
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	287, 458
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	157, 281
BspACI	CCGC	5 cut(s)	14, 40, 71, 128, 192
BspANI	GGCC	2 cut(s)	287, 458
BspCNI	CTCAG	3 cut(s)	69, 73, 412
BspFNI	CGCG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	152, 289
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	31, 165
BssMI	GATC	2 cut(s)	157, 281
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	166, 407
Bst6I	CTCTTC	3 cut(s)	14, 301, 390
BstC8I	GCNNGC	5 cut(s)	12, 192, 259, 413, 417
BstDEI	CTNAG	3 cut(s)	60, 77, 420
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	132, 190
BstKTI	GATC	2 cut(s)	160, 284
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	157, 281
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	449, 496
BsuRI	GGCC	2 cut(s)	287, 458
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	5 cut(s)	12, 192, 259, 413, 417
CfoI	GCGC	2 cut(s)	132, 190
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	73, 112
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	4 cut(s)	53, 98, 155, 412
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	60, 77, 420
DpnI	GATC	2 cut(s)	159, 283
DpnII	GATC	2 cut(s)	157, 281
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	14, 301, 390
EarI	CTCTTC	3 cut(s)	14, 301, 390
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	73, 112
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	56, 101, 158, 415
FaiI	YATR	4 cut(s)	54, 99, 156, 413
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	4 cut(s)	52, 97, 154, 411
FauI	CCCGC	2 cut(s)	135, 199
Fnu4HI	GCNGC	4 cut(s)	15, 41, 438, 510
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	15, 41, 438, 510
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	131, 189
GluI	GCNGC	4 cut(s)	15, 41, 438, 510
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	287, 458
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	132, 190
Hin1II	CATG	4 cut(s)	56, 101, 158, 415
Hin6I	GCGC	2 cut(s)	130, 188
HinP1I	GCGC	2 cut(s)	130, 188
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	57, 331
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	4 cut(s)	76, 217, 265, 346
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	140, 185
HpyAV	CCTTC	2 cut(s)	316, 499
HpyCH4III	ACNGT	2 cut(s)	166, 407
HpyCH4IV	ACGT	2 cut(s)	88, 135
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
HpyF3I	CTNAG	3 cut(s)	60, 77, 420
HpySE526I	ACGT	2 cut(s)	88, 135
Hsp92II	CATG	4 cut(s)	56, 101, 158, 415
HspAI	GCGC	2 cut(s)	130, 188
Kzo9I	GATC	2 cut(s)	157, 281
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	81, 89, 95, 230, 405, 440, 510
Lsp1109I	GCAGC	2 cut(s)	449, 496
LweI	GCATC	2 cut(s)	244, 415
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	88, 135
MaeIII	GTNAC	2 cut(s)	48, 63
MalI	GATC	2 cut(s)	159, 283
MboI	GATC	2 cut(s)	157, 281
MboII	GAAGA	4 cut(s)	31, 288, 291, 377
MhlI	GDGCHC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	49, 96, 304, 331, 399, 415, 481
MseI	TTAA	4 cut(s)	222, 354, 396, 444
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
NdeII	GATC	2 cut(s)	157, 281
NlaIII	CATG	4 cut(s)	56, 101, 158, 415
NmuCI	GTSAC	2 cut(s)	48, 63
NspI	RCATGY	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	16, 42, 439, 511
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	73, 112
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	222, 354, 396, 444
SatI	GCNGC	4 cut(s)	15, 41, 438, 510
Sau3AI	GATC	2 cut(s)	157, 281
Sau96I	GGNCC	2 cut(s)	73, 112
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	91, 138, 216, 228, 272, 402, 442
SfaNI	GCATC	2 cut(s)	244, 415
SfcI	CTRYAG	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	67
SinI	GGWCC	2 cut(s)	73, 112
SphI	GCATGC	1 cut(s)	415
SsiI	CCGC	5 cut(s)	14, 40, 71, 128, 192
SspMI	CTAG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	166, 407
TaiI	ACGT	2 cut(s)	91, 138
TaqI	TCGA	2 cut(s)	147, 228
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	2 cut(s)	17, 43
Tru1I	TTAA	4 cut(s)	222, 354, 396, 444
Tru9I	TTAA	4 cut(s)	222, 354, 396, 444
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	48, 63
TseI	GCWGC	2 cut(s)	437, 509
Tsp45I	GTSAC	2 cut(s)	48, 63
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	73, 112
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.