Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016701

Physical Location & Seq

Genomic Coordinates Forward (+)

19957723 .. 19959403

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTGAGACTTGCGGCGAAGAGGCTTCTCCAAGGCGGCCGTCTGGGGTCACCGGAGGCTCAGTCGCCAGCGGTCCTGGGCCTGCCACGTATGTACCACGAGAGGGTGGTGGACCACTACGACAACCCCCGCAACGTCGGATCGTTCGATAAGAATGATCCGACGGTCGGCACGGGGCTCGTCGGCGCGCCAGCCTGTGGCGACGTGATGAAGCTCCAGATTAAGGTCGATGACAGCACGGGAAAGATTGTTGATGCCTGCTTCAAGACCTTTGGGTGTCGATCGGCCATTGCTTCTTCTTCTGTCGCTACGGAATGGGTGAAGGGGAAACAAATGGAGGAAGTCCTGACTATTAAGAACACAGAGATTGCAAAACATCTTTCCCTACCTCCGGTTAAGCTTCACTGCAGCATGCTCGCGGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAGGCAAGCAAACCAAATCAAGTGGCAGTACAGAGGTATCTCCTATGGAGAAGGCTGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

174

Amino Acids

18.51

Weight (kDa)

8.87

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22220
fragaria_vesca	FvH4_5g05360
malus_domestica	MD06G1173200.v1.1 MD14G1179700.v1.1
prunus_persica	Prupe.5G172700_v2.0.a1
pyrus_communis	pycom06g15430 pycom14g14950
rosa_chinensis	RchiOBHm_Chr7g0193471
rosa_multiflora	Rmu_sc0012783.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262070
rosa_rugosa	Rorug07G0009600
rosa_samantha	Rh7BG136700 Rh7DG137900
rosa_wichuraiana	Rw7G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	2 cut(s)	188, 419
AciI	CCGC	5 cut(s)	14, 36, 71, 130, 419
AclWI	GGATC	2 cut(s)	148, 152
AcoI	YGGCCR	2 cut(s)	37, 285
AfaI	GTAC	2 cut(s)	95, 484
AfiI	CCNNNNNNNGG	5 cut(s)	103, 167, 197, 223, 391
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	214, 400, 440
AluI	AGCT	3 cut(s)	214, 400, 440
AlwI	GGATC	2 cut(s)	148, 152
AoxI	GGCC	3 cut(s)	37, 79, 285
ApeKI	GCWGC	3 cut(s)	408, 437, 509
AscI	GGCGCGCC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	188, 190
AspS9I	GGNCC	3 cut(s)	73, 79, 112
AsuHPI	GGTGA	2 cut(s)	42, 331
AvaII	GGWCC	2 cut(s)	73, 112
BaeI	ACNNNNGTAYC	4 cut(s)	77, 110, 474, 507
BanII	GRGCYC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	420, 449, 496
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 397, 431
BciT130I	CCWGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	5 cut(s)	15, 37, 409, 438, 510
BlsI	GCNGC	5 cut(s)	16, 38, 410, 439, 511
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	73, 112
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	73, 79, 112
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	244, 415
BpmI	CTGGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	31, 76
BsaWI	WCCGGW	2 cut(s)	52, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 167, 197, 223, 391
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	31, 76
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	5 cut(s)	103, 167, 197, 223, 391
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	74
BsePI	GCGCGC	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	420, 449, 496
Bsh1236I	CGCG	2 cut(s)	188, 419
Bsh1285I	CGRYCG	3 cut(s)	40, 168, 284
BshFI	GGCC	3 cut(s)	39, 81, 287
BsiEI	CGRYCG	3 cut(s)	40, 168, 284
BsiSI	CCGG	2 cut(s)	53, 392
BslI	CCNNNNNNNGG	5 cut(s)	103, 167, 197, 223, 391
BsnI	GGCC	3 cut(s)	39, 81, 287
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	140, 157, 281
BspACI	CCGC	5 cut(s)	14, 36, 71, 130, 419
BspANI	GGCC	3 cut(s)	39, 81, 287
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	188, 419
BspMAI	CTGCAG	1 cut(s)	410
BspPI	GGATC	2 cut(s)	148, 152
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	31, 76
BssHII	GCGCGC	1 cut(s)	186
BssMI	GATC	3 cut(s)	140, 157, 281
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	8 cut(s)	69, 83, 188, 192, 259, 413, 417, 461
BstDEI	CTNAG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	2 cut(s)	188, 419
BstHHI	GCGC	2 cut(s)	188, 190
BstKTI	GATC	3 cut(s)	143, 160, 284
BstMBI	GATC	3 cut(s)	140, 157, 281
BstMCI	CGRYCG	3 cut(s)	40, 168, 284
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	2 cut(s)	188, 419
BstV1I	GCAGC	3 cut(s)	420, 449, 496
BstZI	CGGCCG	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	39, 81, 287
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	8 cut(s)	69, 83, 188, 192, 259, 413, 417, 461
CfoI	GCGC	2 cut(s)	188, 190
Cfr13I	GGNCC	3 cut(s)	73, 79, 112
Csp6I	GTAC	2 cut(s)	94, 483
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	2 cut(s)	94, 483
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	3 cut(s)	142, 159, 283
DpnII	GATC	3 cut(s)	140, 157, 281
EaeI	YGGCCR	2 cut(s)	37, 285
EagI	CGGCCG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	73, 112
Eco52I	CGGCCG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	415
FaiI	YATR	3 cut(s)	92, 413, 500
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	5 cut(s)	15, 37, 409, 438, 510
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	15, 37, 409, 438, 510
GlaI	GCGC	2 cut(s)	187, 189
GluI	GCNGC	5 cut(s)	15, 37, 409, 438, 510
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	39, 81, 287
HapII	CCGG	2 cut(s)	53, 392
HhaI	GCGC	2 cut(s)	188, 190
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	2 cut(s)	186, 188
HinP1I	GCGC	2 cut(s)	186, 188
HindIII	AAGCTT	1 cut(s)	398
HpaII	CCGG	2 cut(s)	53, 392
HphI	GGTGA	2 cut(s)	42, 331
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	140, 162
Hpy188III	TCNNGA	3 cut(s)	217, 265, 346
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	4 cut(s)	140, 166, 185, 206
HpyAV	CCTTC	2 cut(s)	316, 499
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	88, 135, 204
HpyCH4V	TGCA	2 cut(s)	371, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	3 cut(s)	88, 135, 204
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	2 cut(s)	186, 188
Kzo9I	GATC	3 cut(s)	140, 157, 281
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	420, 449, 496
LweI	GCATC	2 cut(s)	244, 415
MaeII	ACGT	3 cut(s)	88, 135, 204
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	142, 159, 283
MboI	GATC	3 cut(s)	140, 157, 281
MboII	GAAGA	3 cut(s)	31, 288, 291
MhlI	GDGCHC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	118, 185
MnlI	CCTC	7 cut(s)	15, 49, 96, 331, 399, 415, 481
MseI	TTAA	4 cut(s)	222, 354, 396, 444
MspA1I	CMGCKG	2 cut(s)	71, 440
MspI	CCGG	2 cut(s)	53, 392
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	188, 419
MwoI	GCNNNNNNNGC	3 cut(s)	425, 434, 515
NdeII	GATC	3 cut(s)	140, 157, 281
NlaIII	CATG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	415
PalAI	GGCGCGCC	1 cut(s)	186
PauI	GCGCGC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	16, 38, 410, 439, 511
Ple19I	CGATCG	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	73, 79, 112
PstI	CTGCAG	1 cut(s)	410
PteI	GCGCGC	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	95, 484
RsaNI	GTAC	2 cut(s)	94, 483
SaqAI	TTAA	4 cut(s)	222, 354, 396, 444
SatI	GCNGC	5 cut(s)	15, 37, 409, 438, 510
Sau3AI	GATC	3 cut(s)	140, 157, 281
Sau96I	GGNCC	3 cut(s)	73, 79, 112
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	244, 415
SfcI	CTRYAG	1 cut(s)	406
SgsI	GGCGCGCC	1 cut(s)	186
SinI	GGWCC	2 cut(s)	73, 112
SphI	GCATGC	1 cut(s)	415
SsiI	CCGC	5 cut(s)	14, 36, 71, 130, 419
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	91, 138, 207
TaqI	TCGA	3 cut(s)	147, 228, 280
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	2 cut(s)	17, 39
Tru1I	TTAA	4 cut(s)	222, 354, 396, 444
Tru9I	TTAA	4 cut(s)	222, 354, 396, 444
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	3 cut(s)	408, 437, 509
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	73, 112
XceI	RCATGY	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.