Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016701

Physical Location & Seq

Genomic Coordinates Forward (+)

10186074 .. 10188297

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTGAGGCTGGTATCGAAGAGGCTGCTCCAAGGGTCCCGCGAGGCCCAGCTGCCGGCGGCCCTGACTCTGCCGCGTCTCTACCACGAGAGGGTGGTCGACCACTACGACAACCCCCGCAACGTCGGCTCCTTCGACAAAAACGACCCCTCCGTCGGCACCGGGCTCGTCGGCGCACCCGCCTGCGGTGACGTCATGAAGCTCCAGATTAAGGTCGGCGAAGATGGCAAGATTACTGACGCCGTCTTCAAGACCTTTGGCTGTGGATCCGCCATCGCCTCCTCTTCCGTCGCTACTGAATGGGTGAAGGGGAAGCAAATGGAGGAGGTCCTGACTATTAAGAACACGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGCATGCTTGCTGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAACAAAGCTGGCTAAATCATCAAATGGCAGCTCAGAGGCCTCACCTGTGGAGAAGGCTGCTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

169

Amino Acids

18.06

Weight (kDa)

8.73

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	28 - 150	7e-53	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22220
fragaria_vesca	FvH4_5g05360
malus_domestica	MD06G1173200.v1.1 MD14G1179700.v1.1
prunus_persica	Prupe.5G172700_v2.0.a1
pyrus_communis	pycom06g15430 pycom14g14950
rosa_chinensis	RchiOBHm_Chr7g0193471
rosa_multiflora	Rmu_sc0012783.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262070
rosa_rugosa	Rorug07G0009600
rosa_samantha	Rh7BG136700 Rh7DG137900
rosa_wichuraiana	Rw7G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	42, 76
AciI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
AclWI	GGATC	2 cut(s)	261, 274
AcyI	GRCGYC	2 cut(s)	192, 240
AfiI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	6 cut(s)	52, 202, 385, 425, 448, 471
AluI	AGCT	6 cut(s)	52, 202, 385, 425, 448, 471
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	3 cut(s)	45, 60, 477
ApeKI	GCWGC	6 cut(s)	25, 52, 393, 422, 468, 497
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	36, 46, 61, 328
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	200, 316, 474
AvaII	GGWCC	2 cut(s)	36, 328
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BccI	CCATC	3 cut(s)	218, 281, 422
BceAI	ACGGC	1 cut(s)	227
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 148, 182
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
BlsI	GCNGC	8 cut(s)	27, 54, 61, 75, 395, 424, 470, 499
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	36, 328
BmgT120I	GGNCC	4 cut(s)	36, 46, 61, 328
BmiI	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	2 cut(s)	188, 360
Bpu10I	CCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	192, 240
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 134, 143, 164
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
BseMII	CTCAG	2 cut(s)	396, 486
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	271, 338
BseXI	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BseYI	CCCAGC	1 cut(s)	48
Bsh1236I	CGCG	2 cut(s)	42, 76
BshFI	GGCC	3 cut(s)	47, 62, 479
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	56, 162
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	55, 91, 155, 185, 211
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	47, 62, 479
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
BspANI	GGCC	3 cut(s)	47, 62, 479
BspCNI	CTCAG	2 cut(s)	397, 485
BspFNI	CGCG	2 cut(s)	42, 76
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
BspMAI	CTGCAG	1 cut(s)	395
BspPI	GGATC	2 cut(s)	261, 274
BspT107I	GGYRCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	2 cut(s)	192, 240
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	86
Bst6I	CTCTTC	3 cut(s)	14, 289, 375
BstACI	GRCGYC	2 cut(s)	192, 240
BstC8I	GCNNGC	5 cut(s)	57, 184, 398, 402, 450
BstDEI	CTNAG	2 cut(s)	405, 472
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	42, 76
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	2 cut(s)	42, 76
BstV1I	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	47, 62, 479
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	57, 184, 398, 402, 450
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	36, 46, 61, 328
CseI	GACGC	2 cut(s)	65, 248
CviAII	CATG	2 cut(s)	196, 397
DdeI	CTNAG	2 cut(s)	405, 472
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	3 cut(s)	14, 289, 375
EarI	CTCTTC	3 cut(s)	14, 289, 375
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	36, 328
EcoO109I	RGGNCCY	2 cut(s)	36, 328
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	199, 400
FaiI	YATR	2 cut(s)	197, 398
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	195, 396
FauI	CCCGC	3 cut(s)	47, 125, 187
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	2 cut(s)	188, 360
HaeIII	GGCC	3 cut(s)	47, 62, 479
HapII	CCGG	2 cut(s)	56, 162
HgaI	GACGC	2 cut(s)	65, 248
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	192, 240
Hin1II	CATG	2 cut(s)	199, 400
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	56, 162
HphI	GGTGA	3 cut(s)	200, 316, 474
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	4 cut(s)	196, 205, 250, 331
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	4 cut(s)	128, 158, 173, 293
HpyAV	CCTTC	3 cut(s)	142, 301, 487
HpyCH4IV	ACGT	2 cut(s)	123, 192
HpyCH4V	TGCA	1 cut(s)	393
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
HpyF3I	CTNAG	2 cut(s)	405, 472
HpySE526I	ACGT	2 cut(s)	123, 192
Hsp92I	GRCGYC	2 cut(s)	192, 240
Hsp92II	CATG	2 cut(s)	199, 400
HspAI	GCGC	1 cut(s)	174
KflI	GGGWCCC	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	3 cut(s)	33, 134, 207
Lsp1109I	GCAGC	6 cut(s)	12, 39, 405, 434, 480, 484
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	2 cut(s)	123, 192
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	5 cut(s)	31, 233, 238, 276, 362
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	3 cut(s)	210, 339, 429
MspA1I	CMGCKG	2 cut(s)	52, 425
MspI	CCGG	2 cut(s)	56, 162
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	42, 76
MwoI	GCNNNNNNNGC	5 cut(s)	126, 225, 410, 419, 503
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	266
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	199, 400
NlaIV	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	5 cut(s)	105, 132, 141, 150, 353
PdiI	GCCGGC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	8 cut(s)	27, 54, 61, 75, 395, 424, 470, 499
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PpuMI	RGGWCCY	2 cut(s)	36, 328
Psp5II	RGGWCCY	2 cut(s)	36, 328
PspFI	CCCAGC	1 cut(s)	48
PspN4I	GGNNCC	5 cut(s)	37, 38, 130, 160, 268
PspPI	GGNCC	4 cut(s)	36, 46, 61, 328
PspPPI	RGGWCCY	2 cut(s)	36, 328
PstI	CTGCAG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	2 cut(s)	52, 425
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	210, 339, 429
SatI	GCNGC	8 cut(s)	26, 53, 60, 74, 394, 423, 469, 498
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	4 cut(s)	36, 46, 61, 328
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	36, 328
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	351
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	7 cut(s)	40, 59, 74, 118, 180, 186, 270
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	126, 195
TaqI	TCGA	3 cut(s)	17, 99, 135
TasI	AATT	1 cut(s)	351
TauI	GCSGC	2 cut(s)	62, 76
Tru1I	TTAA	3 cut(s)	210, 339, 429
Tru9I	TTAA	3 cut(s)	210, 339, 429
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	6 cut(s)	25, 52, 393, 422, 468, 497
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	3 cut(s)	142, 277, 362
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	36, 328
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.