Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Forward (+)

3195897 .. 3198656

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCATTCCCTGAGCTTCAAGGTTTCCACTCACTACTGCGCCCGGTGTCGTCTCCCGGGCCCGGAGTCGGAGCCCCGGCCCGGACGAGTCGGGTTCGGGTTCCGGAGTTTCCGGAGAGGCGTTAGGGTTGCGGCCGAGTCGGAGAGGAATGGCTGGAGCGGGAGCCGGAGCTCAAGCCAGAGTCCGGGTCCGGGTCCGAGACCGAGTTCGTTTCTGTCTCGGAGCCAGACGTATGCTTTGTTGAAGCAGCAAATGGAGGTTGCTGCGAAATCTGAGGATTATGAAGAGGCGGCGAGGATTCGTGACTCGTTGAAGATGTTGGAGAAGGAGGAGCCGGTGTTGTGGCTCCGGAGGTTGATCAAGGAGGCGGTGGCGGAGGAGAGGTTTGAGGATGCGGCTAATTATCGAGATGAGCTTAAGGAAATCACACCGCACGCTTTCTTGAAATGTTCAAGTGATGCGACGACCTTGGGCATTCGGGTTCAAGTTAGGAGTGTGTACATAGAGGGCCGAAGTCAGCCTTCCAAGGGGCAACACTTCTTTGCATATAGAATAAGAATCACTAATAACTCCGACCGTCCTGTTCAACTTCTTAGAAGGCATTGGATTGTCACCGATGCCAATGGAAAGTCAGAGAATGTGTGGGGAATTGGTGTTATTGGTCAGCAGCCAGTGATTCTTCCTCAGACTAGTTTTGAATACTCATCTGCATGCCCATTAAGCACTCCTACTGGCAGAATGGAAGGTGACTTTGAGATGAAACACATCAATAGGTTAAGTTCACAATCGTTTAACGTGGCTATTGCCCCATTTTCCCTCGCCATATTAGGAGACGATGATTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

283

Amino Acids

31.78

Weight (kDa)

9.21

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	81 - 110	5.2e-07	UvrB/uvrC motif
DUF525	PF04379	171 - 254	6.4e-33	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccIII	TCCGGA	3 cut(s)	102, 111, 348
AciI	CCGC	7 cut(s)	131, 159, 290, 368, 374, 395, 431
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	6 cut(s)	61, 67, 80, 184, 191, 527
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	8 cut(s)	19, 244, 313, 445, 453, 485, 587, 698
AhlI	ACTAGT	1 cut(s)	689
AluBI	AGCT	3 cut(s)	15, 171, 415
AluI	AGCT	3 cut(s)	15, 171, 415
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	4 cut(s)	56, 193, 222, 825
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	3 cut(s)	102, 111, 348
AoxI	GGCC	4 cut(s)	58, 77, 132, 508
ApaI	GGGCCC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	247, 263, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	6 cut(s)	58, 59, 78, 188, 194, 508
AsuC2I	CCSGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
AsuHPI	GGTGA	2 cut(s)	604, 758
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	188, 194
BaeGI	GKGCMC	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	62, 75, 173
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	250, 259, 679
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
BcoDI	GTCTC	4 cut(s)	56, 193, 222, 825
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	6 cut(s)	132, 248, 264, 291, 396, 668
BlsI	GCNGC	6 cut(s)	133, 249, 265, 292, 397, 669
Bme1390I	CCNGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
Bme18I	GGWCC	2 cut(s)	188, 194
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	6 cut(s)	58, 59, 78, 188, 194, 508
BmiI	GGNNCC	9 cut(s)	60, 72, 101, 164, 189, 195, 224, 333, 347
BmrFI	CCNGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
BmsI	GCATC	3 cut(s)	382, 448, 607
BpmI	CTGGAG	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	4 cut(s)	55, 74, 468, 525
BsaWI	WCCGGW	3 cut(s)	102, 111, 348
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 368, 398
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 67, 80, 184, 191, 527
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	671, 736
BseAI	TCCGGA	3 cut(s)	102, 111, 348
BseDI	CCNNGG	4 cut(s)	55, 74, 468, 525
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	6 cut(s)	61, 67, 80, 184, 191, 527
BseMII	CTCAG	2 cut(s)	264, 698
BseNI	ACTGG	2 cut(s)	671, 736
BseRI	GAGGAG	2 cut(s)	344, 392
BseSI	GKGCMC	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	250, 259, 679
Bsh1285I	CGRYCG	2 cut(s)	135, 577
BshFI	GGCC	4 cut(s)	60, 79, 134, 510
BsiEI	CGRYCG	2 cut(s)	135, 577
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	55
BslI	CCNNNNNNNGG	6 cut(s)	61, 67, 80, 184, 191, 527
BsmAI	GTCTC	4 cut(s)	56, 193, 222, 825
BsmBI	CGTCTC	2 cut(s)	56, 825
BsmI	GAATGC	2 cut(s)	4, 474
BsnI	GGCC	4 cut(s)	60, 79, 134, 510
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	55
Bsp120I	GGGCCC	1 cut(s)	58
Bsp1286I	GDGCHC	3 cut(s)	62, 75, 173
Bsp13I	TCCGGA	3 cut(s)	102, 111, 348
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	7 cut(s)	131, 159, 290, 368, 374, 395, 431
BspANI	GGCC	4 cut(s)	60, 79, 134, 510
BspCNI	CTCAG	2 cut(s)	265, 697
BspEI	TCCGGA	3 cut(s)	102, 111, 348
BspLI	GGNNCC	9 cut(s)	60, 72, 101, 164, 189, 195, 224, 333, 347
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	671, 736
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	55, 74, 468, 525
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	468, 525
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	435, 712
BstDEI	CTNAG	4 cut(s)	11, 273, 593, 684
BstF5I	GGATG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	4 cut(s)	56, 193, 222, 825
BstMBI	GATC	1 cut(s)	357
BstMCI	CGRYCG	2 cut(s)	135, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	8 cut(s)	41, 54, 55, 60, 74, 79, 184, 190
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	250, 259, 679
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	60, 79, 134, 510
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	435, 712
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	6 cut(s)	58, 59, 78, 188, 194, 508
Cfr9I	CCCGGG	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	1 cut(s)	711
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	11, 273, 593, 684
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	468, 525
Eco24I	GRGCYC	3 cut(s)	62, 75, 173
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	188, 194
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	468, 525
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	62, 75, 173
ErhI	CCWWGG	2 cut(s)	468, 525
Esp3I	CGTCTC	2 cut(s)	56, 825
FaeI	CATG	1 cut(s)	714
FaiI	YATR	7 cut(s)	234, 282, 503, 547, 549, 712, 824
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FatI	CATG	1 cut(s)	710
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	6 cut(s)	132, 248, 264, 291, 396, 668
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	3 cut(s)	62, 75, 173
Fsp4HI	GCNGC	6 cut(s)	132, 248, 264, 291, 396, 668
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	6 cut(s)	132, 248, 264, 291, 396, 668
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	4 cut(s)	60, 79, 134, 510
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	714
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	8 cut(s)	65, 87, 137, 181, 298, 305, 558, 676
HphI	GGTGA	2 cut(s)	604, 758
Hpy166II	GTNNAC	2 cut(s)	499, 782
Hpy188I	TCNGA	8 cut(s)	70, 142, 198, 222, 274, 574, 634, 687
Hpy188III	TCNNGA	6 cut(s)	103, 112, 302, 349, 407, 442
Hpy8I	GTNNAC	2 cut(s)	499, 782
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	4 cut(s)	319, 531, 591, 737
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	2 cut(s)	230, 795
HpyCH4V	TGCA	3 cut(s)	4, 545, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	720
HpyF3I	CTNAG	4 cut(s)	11, 273, 593, 684
HpySE526I	ACGT	2 cut(s)	230, 795
Hsp92II	CATG	1 cut(s)	714
HspAI	GCGC	1 cut(s)	39
Kpn2I	TCCGGA	3 cut(s)	102, 111, 348
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	7 cut(s)	70, 156, 162, 168, 222, 331, 351
Lsp1109I	GCAGC	3 cut(s)	250, 259, 679
LweI	GCATC	3 cut(s)	382, 448, 607
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	230, 795
MaeIII	GTNAC	3 cut(s)	302, 610, 746
MalI	GATC	1 cut(s)	359
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	1 cut(s)	357
MboII	GAAGA	3 cut(s)	296, 325, 671
MhlI	GDGCHC	3 cut(s)	62, 75, 173
MluCI	AATT	2 cut(s)	400, 648
MlyI	GAGTC	5 cut(s)	74, 96, 146, 190, 299
MmeI	TCCRAC	4 cut(s)	48, 120, 300, 597
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	3 cut(s)	102, 111, 348
MseI	TTAA	4 cut(s)	417, 719, 776, 792
MslI	CAYNNNNRTG	1 cut(s)	709
MspCI	CTTAAG	1 cut(s)	416
MspR9I	CCNGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
Mva1269I	GAATGC	2 cut(s)	4, 474
MwoI	GCNNNNNNNGC	1 cut(s)	720
NciI	CCSGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	714
NlaIV	GGNNCC	9 cut(s)	60, 72, 101, 164, 189, 195, 224, 333, 347
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	3 cut(s)	302, 610, 746
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	714
PctI	GAATGC	2 cut(s)	4, 474
PfeI	GAWTC	3 cut(s)	298, 558, 676
PkrI	GCNGC	6 cut(s)	133, 249, 265, 292, 397, 669
PleI	GAGTC	5 cut(s)	73, 95, 145, 189, 299
PpsI	GAGTC	5 cut(s)	73, 95, 145, 189, 299
Psp124BI	GAGCTC	1 cut(s)	173
PspN4I	GGNNCC	9 cut(s)	60, 72, 101, 164, 189, 195, 224, 333, 347
PspOMI	GGGCCC	1 cut(s)	58
PspPI	GGNCC	6 cut(s)	58, 59, 78, 188, 194, 508
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	709
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	417, 719, 776, 792
SatI	GCNGC	6 cut(s)	132, 248, 264, 291, 396, 668
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	6 cut(s)	58, 59, 78, 188, 194, 508
SchI	GAGTC	5 cut(s)	74, 96, 146, 190, 299
ScrFI	CCNGG	8 cut(s)	43, 56, 57, 62, 76, 81, 186, 192
SduI	GDGCHC	3 cut(s)	62, 75, 173
SfaNI	GCATC	3 cut(s)	382, 448, 607
SinI	GGWCC	2 cut(s)	188, 194
SmaI	CCCGGG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	2 cut(s)	172, 416
SmoI	CTYRAG	2 cut(s)	172, 416
SpeI	ACTAGT	1 cut(s)	689
SphI	GCATGC	1 cut(s)	714
Sse9I	AATT	2 cut(s)	400, 648
SsiI	CCGC	7 cut(s)	131, 159, 290, 368, 374, 395, 431
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	8 cut(s)	41, 54, 55, 60, 74, 79, 184, 190
StyI	CCWWGG	2 cut(s)	468, 525
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	2 cut(s)	233, 798
TaqI	TCGA	1 cut(s)	406
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	400, 648
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	3 cut(s)	134, 293, 398
TfiI	GAWTC	3 cut(s)	298, 558, 676
Tru1I	TTAA	4 cut(s)	417, 719, 776, 792
Tru9I	TTAA	4 cut(s)	417, 719, 776, 792
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	3 cut(s)	302, 610, 746
TseI	GCWGC	3 cut(s)	247, 263, 667
Tsp45I	GTSAC	3 cut(s)	302, 610, 746
TspDTI	ATGAA	2 cut(s)	297, 773
TspMI	CCCGGG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	678
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	188, 194
XceI	RCATGY	1 cut(s)	714
XmaI	CCCGGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.