Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040216.1

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1389

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

gagaaggaagagccggttttgtggctccggaggttgataaaggaggccgtggcggaagagaggtttgaggatgcggctaattttcgagatgaacttaaggaaattgcgcctcactcttttctgaaatgttcaagtgacgcaacgaccttgggcatccgggttcaagtaaggagtgtgtacatagagggccgaagtcagccttcaaaggggcaacacttctttgcatatagaataagaattaccaataactccgaccaccctgttcaacttcttagaaggcattggatcgtcactgatgccaatggaaaatccgagaatgtgtggggaattggtgttattggtcagcaaccagtgattcttcctcagactagttttgaatactcatctgcatgccccttaagcactcctaccggtagaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

140

Amino Acids

15.95

Weight (kDa)

8.08

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	2 cut(s)	53, 74
AclWI	GGATC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	2 cut(s)	95, 397
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	132, 164, 204, 266, 377
AhlI	ACTAGT	1 cut(s)	368
AlwI	GGATC	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	2 cut(s)	45, 187
AsiGI	ACCGGT	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	1 cut(s)	369
BfrI	CTTAAG	2 cut(s)	95, 397
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	61, 162, 286
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	48, 147
BsaWI	WCCGGW	2 cut(s)	27, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	2 cut(s)	13, 410
Bse1I	ACTGG	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	48, 147
BseGI	GGATG	2 cut(s)	76, 153
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	47, 189
BshTI	ACCGGT	1 cut(s)	410
BsiSI	CCGG	4 cut(s)	14, 28, 157, 411
BslI	CCNNNNNNNGG	1 cut(s)	206
BsnI	GGCC	2 cut(s)	47, 189
Bsp13I	TCCGGA	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	53, 74
BspANI	GGCC	2 cut(s)	47, 189
BspCNI	CTCAG	1 cut(s)	376
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	3
BspTI	CTTAAG	2 cut(s)	95, 397
BsrFI	RCCGGY	2 cut(s)	13, 410
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	2 cut(s)	13, 410
BssECI	CCNNGG	2 cut(s)	48, 147
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	3, 51
BstAFI	CTTAAG	2 cut(s)	95, 397
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	272, 363
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	76, 153
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	47, 189
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	76, 153
BtsIMutI	CAGTG	2 cut(s)	291, 357
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	13, 410
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	178
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	6 cut(s)	13, 25, 47, 77, 189, 199
CviKI_1	RGCY	6 cut(s)	13, 25, 47, 77, 189, 199
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	272, 363
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	3, 51
EarI	CTCTTC	2 cut(s)	3, 51
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	393
FaiI	YATR	4 cut(s)	182, 226, 228, 391
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FatI	CATG	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	83, 140
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	47, 189
HapII	CCGG	4 cut(s)	14, 28, 157, 411
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	1 cut(s)	393
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	4 cut(s)	14, 28, 157, 411
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	123, 253, 313, 366
Hpy188III	TCNNGA	2 cut(s)	28, 86
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	210, 270
HpyCH4V	TGCA	2 cut(s)	224, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	272, 363
Hsp92II	CATG	1 cut(s)	393
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	285
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	5 cut(s)	27, 41, 170, 273, 363
LweI	GCATC	3 cut(s)	61, 162, 286
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	134, 289
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	20, 68, 350
MluCI	AATT	4 cut(s)	79, 102, 237, 327
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	7 cut(s)	24, 37, 54, 61, 120, 178, 372
MroI	TCCGGA	1 cut(s)	27
MseI	TTAA	2 cut(s)	96, 398
MslI	CAYNNNNRTG	1 cut(s)	388
MspCI	CTTAAG	2 cut(s)	95, 397
MspI	CCGG	4 cut(s)	14, 28, 157, 411
MspR9I	CCNGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	393
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	134, 289
NspI	RCATGY	1 cut(s)	393
PaeI	GCATGC	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	2 cut(s)	96, 398
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	3 cut(s)	35, 65, 149
SfaNI	GCATC	3 cut(s)	61, 162, 286
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	95, 397
SmoI	CTYRAG	2 cut(s)	95, 397
SpeI	ACTAGT	1 cut(s)	368
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	4 cut(s)	79, 102, 237, 327
SsiI	CCGC	2 cut(s)	53, 74
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	79, 102, 237, 327
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	96, 398
Tru9I	TTAA	2 cut(s)	96, 398
TscAI	CASTG	2 cut(s)	298, 357
TseFI	GTSAC	2 cut(s)	134, 289
Tsp45I	GTSAC	2 cut(s)	134, 289
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	298, 357
Vha464I	CTTAAG	2 cut(s)	95, 397
XceI	RCATGY	1 cut(s)	393
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.