Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Forward (+)

57922364 .. 57924678

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCATTCGCTGAGCTTCAAGGTTTCCACTGACTACTGCGGGAGGTGTTGTTTTCCGGGTCCGGGAAGGGTTGCAGAGTCGGAGGTCCGGCCCAGACAGGTCCGGTTCGGGTTTAGGGATTTCGGGAGAGGCGTTAGGGTTGCGGCGTGTGCTTCCGAGTCGGAGAGGAATGGCTGGAGCGGCAGCCGGAGTTCGAGTCCGACTCCGGGTCCGGGTCCGAGACCGAGTTCGTTTCTATCTCGGAGCCAGACGTATGCTCTGTTGAAGCAGCAAATGGAGGTTGCTGCGAAATCTGAGGATTATGAAGAGGCGGCGAGGATACGTGACTCGCTGAAGAGGTTAGAGAAGGAAGAGCCGGTTTTGTGGCTCCGGAGGTTGATAAAGGAGGCCGTGGCGGAAGAGAGGTTTGAGGATGCGGCTAATTTTCGAGATGAGCTTAAGGAAATTGCGCCTCACTCTTTTCTGAAATGTTCAAGTGACGCAACGACCTTGGGCATTCGGGTTCAAGTAAGGAGTGTGTACATAGAGGGCCGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATAAGAATTACCAATAACTCTGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTGTCACTGATGCCAATGGAAAATCCGAGAATGTGTGGGGAATTGGTGTTATCGGTCAGCAGCCAGTGATTCTTCCTCAGACTAGTTTTGAATACTCATCTGCATGCCCCTTAAGCACTCCTACTGGTAGAATGGAAGGTGACTTTGAGATGAAACACATCAATAGGTTAAGTTCACAATCGTTTAACGTGGCTATTGCCCCATTTTCCCTCTCCATATTAGGAGACGATGATACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

290

Amino Acids

32.44

Weight (kDa)

8.74

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	88 - 117	2e-07	UvrB/uvrC motif
DUF525	PF04379	178 - 261	5.4e-33	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	6 cut(s)	39, 143, 180, 311, 395, 416
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	4 cut(s)	62, 206, 212, 548
AflII	CTTAAG	2 cut(s)	437, 739
AgsI	TTSAA	7 cut(s)	19, 265, 474, 506, 546, 608, 719
AhdI	GACNNNNNGTC	1 cut(s)	207
AhlI	ACTAGT	1 cut(s)	710
AluBI	AGCT	2 cut(s)	15, 436
AluI	AGCT	2 cut(s)	15, 436
Alw26I	GTCTC	2 cut(s)	214, 846
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	3 cut(s)	89, 387, 529
ApeKI	GCWGC	4 cut(s)	183, 268, 284, 688
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	7 cut(s)	59, 85, 90, 100, 209, 215, 529
AsuC2I	CCSGG	4 cut(s)	57, 63, 207, 213
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	5 cut(s)	59, 85, 100, 209, 215
BbvI	GCAGC	4 cut(s)	195, 271, 280, 700
BceAI	ACGGC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	312
BcnI	CCSGG	4 cut(s)	57, 63, 207, 213
BcoDI	GTCTC	2 cut(s)	214, 846
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	1 cut(s)	711
BfrI	CTTAAG	2 cut(s)	437, 739
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	8 cut(s)	144, 181, 184, 269, 285, 312, 417, 689
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	8 cut(s)	145, 182, 185, 270, 286, 313, 418, 690
Bme1390I	CCNGG	4 cut(s)	57, 63, 207, 213
Bme18I	GGWCC	5 cut(s)	59, 85, 100, 209, 215
BmeRI	GACNNNNNGTC	1 cut(s)	207
BmgT120I	GGNCC	7 cut(s)	59, 85, 90, 100, 209, 215, 529
BmiI	GGNNCC	5 cut(s)	60, 210, 216, 245, 368
BmrFI	CCNGG	4 cut(s)	57, 63, 207, 213
BmsI	GCATC	2 cut(s)	403, 628
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuMI	CCSGG	4 cut(s)	57, 63, 207, 213
BsaAI	YACGTR	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	390, 489
BsaWI	WCCGGW	2 cut(s)	102, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 181, 211
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 206, 212, 548
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	692, 757
BseAI	TCCGGA	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	390, 489
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	4 cut(s)	62, 206, 212, 548
BseMII	CTCAG	2 cut(s)	285, 719
BseNI	ACTGG	2 cut(s)	692, 757
BseXI	GCAGC	4 cut(s)	195, 271, 280, 700
BshFI	GGCC	3 cut(s)	91, 389, 531
BsiSI	CCGG	9 cut(s)	56, 62, 88, 103, 187, 206, 212, 356, 370
BslI	CCNNNNNNNGG	4 cut(s)	62, 206, 212, 548
BsmAI	GTCTC	2 cut(s)	214, 846
BsmBI	CGTCTC	1 cut(s)	846
BsmI	GAATGC	2 cut(s)	4, 495
BsnI	GGCC	3 cut(s)	91, 389, 531
Bso31I	GGTCTC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	519
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	6 cut(s)	39, 143, 180, 311, 395, 416
BspANI	GGCC	3 cut(s)	91, 389, 531
BspCNI	CTCAG	2 cut(s)	286, 718
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	5 cut(s)	60, 210, 216, 245, 368
BspQI	GCTCTTC	1 cut(s)	345
BspTI	CTTAAG	2 cut(s)	437, 739
BspTNI	GGTCTC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	692, 757
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	390, 489
BssT1I	CCWWGG	1 cut(s)	489
Bst6I	CTCTTC	4 cut(s)	300, 329, 345, 393
BstAFI	CTTAAG	2 cut(s)	437, 739
BstAUI	TGTACA	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	4 cut(s)	11, 294, 614, 705
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	214, 846
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 180, 741
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	4 cut(s)	55, 61, 205, 211
BstV1I	GCAGC	4 cut(s)	195, 271, 280, 700
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	91, 389, 531
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	27, 633, 699
Cac8I	GCNNGC	1 cut(s)	733
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	7 cut(s)	59, 85, 90, 100, 209, 215, 529
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	1 cut(s)	732
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	4 cut(s)	11, 294, 614, 705
DriI	GACNNNNNGTC	1 cut(s)	207
Eam1104I	CTCTTC	4 cut(s)	300, 329, 345, 393
Eam1105I	GACNNNNNGTC	1 cut(s)	207
EarI	CTCTTC	4 cut(s)	300, 329, 345, 393
EciI	GGCGGA	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	5 cut(s)	59, 85, 100, 209, 215
Eco57I	CTGAAG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	846
FaeI	CATG	1 cut(s)	735
FaiI	YATR	7 cut(s)	255, 303, 524, 568, 570, 733, 845
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FatI	CATG	1 cut(s)	731
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	8 cut(s)	144, 181, 184, 269, 285, 312, 417, 689
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	8 cut(s)	144, 181, 184, 269, 285, 312, 417, 689
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	8 cut(s)	144, 181, 184, 269, 285, 312, 417, 689
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	91, 389, 531
HapII	CCGG	9 cut(s)	56, 62, 88, 103, 187, 206, 212, 356, 370
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	735
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	6 cut(s)	77, 158, 196, 202, 326, 697
HpaII	CCGG	9 cut(s)	56, 62, 88, 103, 187, 206, 212, 356, 370
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	2 cut(s)	520, 803
Hpy188III	TCNNGA	3 cut(s)	124, 370, 428
Hpy8I	GTNNAC	2 cut(s)	520, 803
HpyAV	CCTTC	5 cut(s)	60, 340, 552, 612, 758
HpyCH4IV	ACGT	3 cut(s)	251, 322, 816
HpyCH4V	TGCA	4 cut(s)	4, 74, 566, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 180, 741
HpyF3I	CTNAG	4 cut(s)	11, 294, 614, 705
HpySE526I	ACGT	3 cut(s)	251, 322, 816
Hsp92II	CATG	1 cut(s)	735
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	177, 243, 372
Lsp1109I	GCAGC	4 cut(s)	195, 271, 280, 700
LweI	GCATC	2 cut(s)	403, 628
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	3 cut(s)	251, 322, 816
MaeIII	GTNAC	4 cut(s)	323, 476, 631, 767
MbiI	CCGCTC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	317, 346, 362, 410, 692
MluCI	AATT	4 cut(s)	421, 444, 579, 669
MlyI	GAGTC	5 cut(s)	86, 167, 196, 205, 320
MmeI	TCCRAC	3 cut(s)	60, 141, 224
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	4 cut(s)	438, 740, 797, 813
MslI	CAYNNNNRTG	1 cut(s)	730
MspCI	CTTAAG	2 cut(s)	437, 739
MspI	CCGG	9 cut(s)	56, 62, 88, 103, 187, 206, 212, 356, 370
MspR9I	CCNGG	4 cut(s)	57, 63, 207, 213
Mva1269I	GAATGC	2 cut(s)	4, 495
MwoI	GCNNNNNNNGC	3 cut(s)	149, 180, 741
NciI	CCSGG	4 cut(s)	57, 63, 207, 213
NlaIII	CATG	1 cut(s)	735
NlaIV	GGNNCC	5 cut(s)	60, 210, 216, 245, 368
NmuCI	GTSAC	4 cut(s)	323, 476, 631, 767
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	735
PaeI	GCATGC	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	2 cut(s)	4, 495
PfeI	GAWTC	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	8 cut(s)	145, 182, 185, 270, 286, 313, 418, 690
PleI	GAGTC	5 cut(s)	85, 166, 196, 204, 320
PpsI	GAGTC	5 cut(s)	85, 166, 196, 204, 320
Ppu21I	YACGTR	1 cut(s)	323
PspN4I	GGNNCC	5 cut(s)	60, 210, 216, 245, 368
PspPI	GGNCC	7 cut(s)	59, 85, 90, 100, 209, 215, 529
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	438, 740, 797, 813
SatI	GCNGC	8 cut(s)	144, 181, 184, 269, 285, 312, 417, 689
Sau96I	GGNCC	7 cut(s)	59, 85, 90, 100, 209, 215, 529
SchI	GAGTC	5 cut(s)	86, 167, 196, 205, 320
ScrFI	CCNGG	4 cut(s)	57, 63, 207, 213
SfaNI	GCATC	2 cut(s)	403, 628
SinI	GGWCC	5 cut(s)	59, 85, 100, 209, 215
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	2 cut(s)	437, 739
SmoI	CTYRAG	2 cut(s)	437, 739
SpeI	ACTAGT	1 cut(s)	710
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	4 cut(s)	421, 444, 579, 669
SsiI	CCGC	6 cut(s)	39, 143, 180, 311, 395, 416
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	4 cut(s)	55, 61, 205, 211
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	3 cut(s)	254, 325, 819
TaqI	TCGA	2 cut(s)	194, 427
TaqII	GACCGA	2 cut(s)	238, 671
TasI	AATT	4 cut(s)	421, 444, 579, 669
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	4 cut(s)	146, 183, 314, 419
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	438, 740, 797, 813
Tru9I	TTAA	4 cut(s)	438, 740, 797, 813
TscAI	CASTG	3 cut(s)	34, 640, 699
TseFI	GTSAC	4 cut(s)	323, 476, 631, 767
TseI	GCWGC	4 cut(s)	183, 268, 284, 688
Tsp45I	GTSAC	4 cut(s)	323, 476, 631, 767
TspDTI	ATGAA	2 cut(s)	318, 794
TspRI	CASTG	3 cut(s)	34, 640, 699
Vha464I	CTTAAG	2 cut(s)	437, 739
VpaK11BI	GGWCC	5 cut(s)	59, 85, 100, 209, 215
XceI	RCATGY	1 cut(s)	735
XspI	CTAG	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.