Prupe.5G172000_v2.0.a1

F-box protein SKIP16-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014736
Physical Location & Seq
Reverse (-)
14676316 .. 14679805
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G172000.1

Sequence Viewer

Length: 894 bp
ATGCATTCCATCAGCCTCAAAGTCTGCACTGATTACTGCTCGGGGACGAGGACGTGTTTGCCGGGCCGAGGGAGCTTCAGTTCTGCGAATTCGGAGCTCCGGAACTTGAGAGTCGGGCCGGGGTTTAGAGATTTCGGGAAATCGGGTCGGGTCGTGGCGTGTGTTCCGGAGAGGAATGGGAATAGCCGGAGCGGAAGTCCGAGTTCGAGTTCGAGCCCGAGTTCGGGTGCGGGTCAGAAATCGAGTTCGTTTCTTTCTCGGAGTCAAAGCTGGGCTTTGATGAAGCAGCAAATGGAGGTTGCTGCAAATACCGAGGATTATGAAGAGGCTGCAAGGATACGTGACTCGTTGAAGTTGTTAGAAGAAGAAGAGCCGATTTTGTGGCTCCGAAGGAAGATAAAGGAGGCAATCGCTGAAGAGAGATTTGAGGATGCAGCTAAGTATCGAGATGAGCTAAAGGAAATTGCCCCTTACTCTTTCTTGAAATGTTCAAGTGATGCAACCACCTTGGGCATTCGGGTTCAAGTTAGAAGTGTGTACATAGAGGGACGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATACGAATTAGCAATAACTCAGATCGCCCTGTTCAACTGCTTAGAAGACATTGGATTATCACTGATGCCAACGGAAAATCCGAGAATGTATGGGGGATTGGTGTTATCGGTGAACAGCCCGTTATTCTTCCTCAAGCTAGTTTTGAATACTCATCTGCCTGCCCATTAAGCACTCCCACCGGAAGAATGGAAGGTGACTTTGAGATGAAACACATCAATAGTAGGGTAAGTTCACAATCATTTAACGTGGCTATTGCCCCATTTTCCCTCTCAGTATTGGGAGATGACATTGACACCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF525 UVR

Protein Analysis

298

Amino Acids

32.92

Weight (kDa)

8.5

Isoelectric Point (pI)

65.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccIII TCCGGA 2 cut(s) 99, 166
AciI CCGC 2 cut(s) 192, 230
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 2 cut(s) 61, 435
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 4 cut(s) 68, 223, 224, 566
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 7 cut(s) 352, 484, 492, 524, 564, 626, 737
AjiI CACGTC 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 64, 96
AluBI AGCT 6 cut(s) 75, 97, 270, 437, 454, 728
AluI AGCT 6 cut(s) 75, 97, 270, 437, 454, 728
Alw21I GWGCWC 1 cut(s) 99
Ama87I CYCGRG 2 cut(s) 40, 217
Aor13HI TCCGGA 2 cut(s) 99, 166
AoxI GGCC 2 cut(s) 64, 116
ApeKI GCWGC 4 cut(s) 286, 302, 329, 434
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 64, 116
AsuC2I CCSGG 2 cut(s) 63, 120
AsuHPI GGTGA 2 cut(s) 713, 797
AvaI CYCGRG 2 cut(s) 40, 217
BanII GRGCYC 2 cut(s) 99, 218
BbsI GAAGAC 1 cut(s) 643
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 289, 298, 316, 446
BccI CCATC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 2 cut(s) 63, 120
BfaI CTAG 1 cut(s) 729
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 4 cut(s) 287, 303, 330, 435
BlsI GCNGC 4 cut(s) 288, 304, 331, 436
Bme1390I CCNGG 2 cut(s) 63, 120
BmeT110I CYCGRG 2 cut(s) 40, 217
BmgBI CACGTC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 64, 116
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 63, 120
BmsI GCATC 3 cut(s) 421, 487, 646
BpiI GAAGAC 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 127, 708
BpuMI CCSGG 2 cut(s) 63, 120
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 4 cut(s) 67, 119, 312, 507
BsaWI WCCGGW 3 cut(s) 99, 166, 770
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 181, 211
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 223, 224, 566
BseAI TCCGGA 2 cut(s) 99, 166
BseDI CCNNGG 4 cut(s) 67, 119, 312, 507
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 4 cut(s) 68, 223, 224, 566
BseMII CTCAG 2 cut(s) 624, 876
BseXI GCAGC 4 cut(s) 289, 298, 316, 446
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 10
BshFI GGCC 2 cut(s) 66, 118
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 40, 217
BsiSI CCGG 6 cut(s) 62, 100, 119, 167, 187, 771
BslFI GGGAC 2 cut(s) 58, 561
BslI CCNNNNNNNGG 4 cut(s) 68, 223, 224, 566
BsmFI GGGAC 2 cut(s) 58, 561
BsmI GAATGC 2 cut(s) 4, 513
BsnI GGCC 2 cut(s) 66, 118
BsoBI CYCGRG 2 cut(s) 40, 217
Bsp1286I GDGCHC 2 cut(s) 99, 218
Bsp13I TCCGGA 2 cut(s) 99, 166
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 2 cut(s) 192, 230
BspANI GGCC 2 cut(s) 66, 118
BspCNI CTCAG 2 cut(s) 623, 875
BspEI TCCGGA 2 cut(s) 99, 166
BspLI GGNNCC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 537
BssECI CCNNGG 4 cut(s) 67, 119, 312, 507
BssMI GATC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 507
Bst6I CTCTTC 3 cut(s) 318, 363, 411
BstAUI TGTACA 1 cut(s) 537
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 4 cut(s) 438, 610, 632, 862
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 1 cut(s) 616
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 2 cut(s) 72, 759
BstSCI CCNGG 2 cut(s) 61, 118
BstV1I GCAGC 4 cut(s) 289, 298, 316, 446
BstV2I GAAGAC 1 cut(s) 643
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 2 cut(s) 66, 118
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 27, 651
Cac8I GCNNGC 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 64, 116
Csp6I GTAC 1 cut(s) 538
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 4 cut(s) 438, 610, 632, 862
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 318, 363, 411
EarI CTCTTC 3 cut(s) 318, 363, 411
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 2 cut(s) 99, 218
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 61, 435
Eco88I CYCGRG 2 cut(s) 40, 217
EcoICRI GAGCTC 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 99, 218
ErhI CCWWGG 1 cut(s) 507
FaiI YATR 5 cut(s) 321, 542, 586, 588, 682
FalI AAGNNNNNCTT 4 cut(s) 259, 291, 544, 576
FaqI GGGAC 2 cut(s) 58, 561
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 287, 303, 330, 435
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 2 cut(s) 99, 218
Fsp4HI GCNGC 4 cut(s) 287, 303, 330, 435
FspBI CTAG 1 cut(s) 729
GluI GCNGC 4 cut(s) 287, 303, 330, 435
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 66, 118
HapII CCGG 6 cut(s) 62, 100, 119, 167, 187, 771
HinfI GANTC 3 cut(s) 111, 262, 344
HpaII CCGG 6 cut(s) 62, 100, 119, 167, 187, 771
HphI GGTGA 2 cut(s) 713, 797
Hpy166II GTNNAC 3 cut(s) 538, 704, 824
Hpy188I TCNGA 7 cut(s) 94, 201, 237, 261, 389, 613, 673
Hpy188III TCNNGA 5 cut(s) 100, 136, 167, 446, 481
Hpy8I GTNNAC 3 cut(s) 538, 704, 824
HpyAV CCTTC 3 cut(s) 384, 570, 776
HpyCH4IV ACGT 3 cut(s) 53, 340, 837
HpyCH4V TGCA 7 cut(s) 4, 27, 305, 332, 434, 500, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 759
HpyF3I CTNAG 4 cut(s) 438, 610, 632, 862
HpySE526I ACGT 3 cut(s) 53, 340, 837
Kpn2I TCCGGA 2 cut(s) 99, 166
Kzo9I GATC 1 cut(s) 613
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 5 cut(s) 72, 94, 102, 189, 390
LpnPI CCDG 9 cut(s) 75, 113, 132, 180, 200, 256, 633, 763, 784
Lsp1109I GCAGC 4 cut(s) 289, 298, 316, 446
LweI GCATC 3 cut(s) 421, 487, 646
MaeI CTAG 1 cut(s) 729
MaeII ACGT 3 cut(s) 53, 340, 837
MaeIII GTNAC 2 cut(s) 341, 785
MalI GATC 1 cut(s) 615
MbiI CCGCTC 1 cut(s) 192
MboI GATC 1 cut(s) 613
MboII GAAGA 9 cut(s) 335, 374, 377, 380, 406, 428, 648, 710, 786
MhlI GDGCHC 2 cut(s) 99, 218
MluCI AATT 3 cut(s) 88, 462, 597
MlyI GAGTC 3 cut(s) 120, 271, 338
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 99, 166
MseI TTAA 2 cut(s) 758, 834
MspI CCGG 6 cut(s) 62, 100, 119, 167, 187, 771
MspR9I CCNGG 2 cut(s) 63, 120
Mva1269I GAATGC 2 cut(s) 4, 513
MwoI GCNNNNNNNGC 2 cut(s) 72, 759
NciI CCSGG 2 cut(s) 63, 120
NdeII GATC 1 cut(s) 613
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 341, 785
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 2 cut(s) 4, 513
PflFI GACNNNGTC 1 cut(s) 552
PkrI GCNGC 4 cut(s) 288, 304, 331, 436
PleI GAGTC 3 cut(s) 119, 270, 338
PpsI GAGTC 3 cut(s) 119, 270, 338
Ppu21I YACGTR 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 2 cut(s) 64, 116
PsrI GAACNNNNNNTAC 2 cut(s) 805, 837
PsyI GACNNNGTC 1 cut(s) 552
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 758, 834
SatI GCNGC 4 cut(s) 287, 303, 330, 435
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 2 cut(s) 64, 116
SchI GAGTC 3 cut(s) 120, 271, 338
ScrFI CCNGG 2 cut(s) 63, 120
SduI GDGCHC 2 cut(s) 99, 218
SfaNI GCATC 3 cut(s) 421, 487, 646
SmlI CTYRAG 2 cut(s) 106, 723
SmoI CTYRAG 2 cut(s) 106, 723
Sse9I AATT 3 cut(s) 88, 462, 597
SsiI CCGC 2 cut(s) 192, 230
SspMI CTAG 1 cut(s) 729
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 61, 118
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 3 cut(s) 56, 343, 840
TaqI TCGA 4 cut(s) 206, 212, 242, 445
TasI AATT 3 cut(s) 88, 462, 597
TatI WGTACW 1 cut(s) 537
Tru1I TTAA 2 cut(s) 758, 834
Tru9I TTAA 2 cut(s) 758, 834
TscAI CASTG 2 cut(s) 34, 658
TseFI GTSAC 2 cut(s) 341, 785
TseI GCWGC 4 cut(s) 286, 302, 329, 434
Tsp45I GTSAC 2 cut(s) 341, 785
TspDTI ATGAA 3 cut(s) 296, 336, 812
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 2 cut(s) 34, 658
Tth111I GACNNNGTC 1 cut(s) 552
XapI RAATTY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XspI CTAG 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.