Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Forward (+)

56231878 .. 56234600

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCATTCGCTGAGCTTCAAGGTTTCCACTGACTACTGCGGGAGGTGTTGTTTTCCGGGTCCGGGAAGGGTTGCGGAGTCGGAGGTCCGGCCCAGACAGGTCCGGTTCGGGTTTAGGGATTTCGGGAGAGGCGTTAGGGTTGCGGCGTGTGCTTCCGAGTCGGAGAGGAACGGGAGTAATGGCTGGAGCGGCAGCCGGAGTTCGAGTCCGACTCCGGGCCCGGGTCCGAGACCGAGTTCGTTTCTGTCTCGGAGCCAGACGTATGCTCTGTTGAAGCAGCAAATGGAGGTTGCTGCGAAATCTGAGGATTACGAAGAGGCGGCGAGGATACGTGACTCGCTGAAGAGGTTAGAGAAGGAGGAGCCGGTTTTATGGCTCCGGAGGTTGATAAAGGAGGCCGTGGCGGAAGAGAGGTTTGAGGATGCGGCTAATTTTCGAGATGAGCTTAAGGAAATTGCGCCTCACTCTTTTCTGAAATGTTCAAGTGACGCAACGACCTTGGGCATTCGGGTTCAAGTTAGGAGTGTCTACATAGAGGGCCGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATAAGAATTACCAATAACTCCGACCACCCTGTTCAACTTCTTAGAAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

211

Amino Acids

23.89

Weight (kDa)

9.59

Isoelectric Point (pI)

62.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	91 - 120	1.3e-07	UvrB/uvrC motif
DUF525	PF04379	181 - 211	7e-07	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	528
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	19, 274, 483, 515, 555, 617
AluBI	AGCT	2 cut(s)	15, 445
AluI	AGCT	2 cut(s)	15, 445
Alw26I	GTCTC	2 cut(s)	223, 252
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	4 cut(s)	89, 217, 396, 538
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	192, 277, 293
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	8 cut(s)	59, 85, 90, 100, 217, 218, 224, 538
AsuC2I	CCSGG	5 cut(s)	57, 63, 216, 221, 222
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	4 cut(s)	59, 85, 100, 224
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	204, 280, 289
BceAI	ACGGC	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
BcoDI	GTCTC	2 cut(s)	223, 252
BfrI	CTTAAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	7 cut(s)	144, 190, 193, 278, 294, 321, 426
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	7 cut(s)	145, 191, 194, 279, 295, 322, 427
Bme1390I	CCNGG	5 cut(s)	57, 63, 216, 221, 222
Bme18I	GGWCC	4 cut(s)	59, 85, 100, 224
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	8 cut(s)	59, 85, 90, 100, 217, 218, 224, 538
BmiI	GGNNCC	6 cut(s)	60, 219, 225, 254, 363, 377
BmrFI	CCNGG	5 cut(s)	57, 63, 216, 221, 222
BmsI	GCATC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuMI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
BsaAI	YACGTR	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	220, 399, 498
BsaWI	WCCGGW	2 cut(s)	102, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 190, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
Bse118I	RCCGGY	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	220, 399, 498
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	204, 280, 289
BshFI	GGCC	4 cut(s)	91, 219, 398, 540
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
BslI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
BsmAI	GTCTC	2 cut(s)	223, 252
BsmI	GAATGC	2 cut(s)	4, 504
BsnI	GGCC	4 cut(s)	91, 219, 398, 540
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	220
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	378
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
BspANI	GGCC	4 cut(s)	91, 219, 398, 540
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	378
BspLI	GGNNCC	6 cut(s)	60, 219, 225, 254, 363, 377
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	220, 399, 498
BssT1I	CCWWGG	1 cut(s)	498
Bst6I	CTCTTC	3 cut(s)	309, 338, 402
BstAFI	CTTAAG	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	11, 303, 623
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	223, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 189
BstSCI	CCNGG	5 cut(s)	55, 61, 214, 219, 220
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	204, 280, 289
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	91, 219, 398, 540
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	8 cut(s)	59, 85, 90, 100, 217, 218, 224, 538
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	11, 303, 623
Eam1104I	CTCTTC	3 cut(s)	309, 338, 402
EarI	CTCTTC	3 cut(s)	309, 338, 402
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	4 cut(s)	59, 85, 100, 224
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	498
FaiI	YATR	5 cut(s)	264, 373, 533, 577, 579
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	7 cut(s)	144, 190, 193, 278, 294, 321, 426
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	7 cut(s)	144, 190, 193, 278, 294, 321, 426
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	7 cut(s)	144, 190, 193, 278, 294, 321, 426
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	91, 219, 398, 540
HapII	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	5 cut(s)	77, 158, 205, 211, 335
HpaII	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	9 cut(s)	82, 157, 163, 210, 228, 252, 304, 474, 604
Hpy188III	TCNNGA	3 cut(s)	124, 379, 437
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	4 cut(s)	60, 349, 561, 621
HpyCH4IV	ACGT	2 cut(s)	260, 331
HpyCH4V	TGCA	2 cut(s)	4, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 189
HpyF3I	CTNAG	3 cut(s)	11, 303, 623
HpySE526I	ACGT	2 cut(s)	260, 331
HspAI	GCGC	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	378
LmnI	GCTCC	4 cut(s)	186, 252, 361, 381
Lsp1109I	GCAGC	3 cut(s)	204, 280, 289
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	260, 331
MaeIII	GTNAC	2 cut(s)	332, 485
MbiI	CCGCTC	1 cut(s)	189
MboII	GAAGA	3 cut(s)	326, 355, 419
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	430, 453, 588
MlyI	GAGTC	5 cut(s)	86, 167, 205, 214, 329
MmeI	TCCRAC	4 cut(s)	60, 141, 233, 627
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	378
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
MspR9I	CCNGG	5 cut(s)	57, 63, 216, 221, 222
Mva1269I	GAATGC	2 cut(s)	4, 504
MwoI	GCNNNNNNNGC	2 cut(s)	149, 189
NciI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
NlaIV	GGNNCC	6 cut(s)	60, 219, 225, 254, 363, 377
NmuCI	GTSAC	2 cut(s)	332, 485
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	2 cut(s)	4, 504
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	7 cut(s)	145, 191, 194, 279, 295, 322, 427
PleI	GAGTC	5 cut(s)	85, 166, 205, 213, 329
PpsI	GAGTC	5 cut(s)	85, 166, 205, 213, 329
Ppu21I	YACGTR	1 cut(s)	332
PspN4I	GGNNCC	6 cut(s)	60, 219, 225, 254, 363, 377
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	8 cut(s)	59, 85, 90, 100, 217, 218, 224, 538
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	7 cut(s)	144, 190, 193, 278, 294, 321, 426
Sau96I	GGNCC	8 cut(s)	59, 85, 90, 100, 217, 218, 224, 538
SchI	GAGTC	5 cut(s)	86, 167, 205, 214, 329
ScrFI	CCNGG	5 cut(s)	57, 63, 216, 221, 222
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	4 cut(s)	59, 85, 100, 224
SmaI	CCCGGG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	430, 453, 588
SsiI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
StyD4I	CCNGG	5 cut(s)	55, 61, 214, 219, 220
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	2 cut(s)	263, 334
TaqI	TCGA	2 cut(s)	203, 436
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	430, 453, 588
TauI	GCSGC	4 cut(s)	146, 192, 323, 428
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	332, 485
TseI	GCWGC	3 cut(s)	192, 277, 293
Tsp45I	GTSAC	2 cut(s)	332, 485
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	4 cut(s)	59, 85, 100, 224
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.