Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

19915642 .. 19916667

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCATTCATTAAGCCTCAAAGTCTGCAGTGATTGCTGTCCGGGGACGACGAGAACGTGTTTTCCGGGTCGACGGAGCTTCAGCGTCGTGAATTTGGAGGCCCGGAACTTGAGAGTCGGTTCGGGGCGTGGGGATTTCAGGAAATCGGGTCGGGTCGTGGCGTGCGCCGCGGAGAGGAGCGAGGGGAATGGGTGGAGTGGAACTCCGAGTTCGAGTCCGAGTTCCGGTGCGGGCCAGAAACCGAGTTCGTTTTTGTCTCGGACTCAGAGCTGGGCTTTGTTGAAGCAGCAAATGGAGGTCGCGGCGAAATCCGAGGATTATGAAGAGGCGGCGAGGATAAGGGACTCGTTGAAGTTGCTGGAAGAAGAAGAGCCGGTTTTGTGGCTCCGAAGAAGGATTAAGGAGGCAATTGCTGAAGAGAGATTTGAGGAGGCCGCGAAATATCGAGATGAGCTAAAGGAAATTGCCCCTTACTCTTTCTTGAAATGTTCAAGTGATGCAACAACTTTGGGTATTCGTGTTCAAGTTAGGAGCGTGTACATAGAGGGTAGAAGTCAGCCTTCGAAGGGGCAACACTTCTTTGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

197

Amino Acids

21.86

Weight (kDa)

9.08

Isoelectric Point (pI)

66.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	3 cut(s)	170, 302, 437
AciI	CCGC	6 cut(s)	168, 170, 230, 302, 329, 435
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	64, 435
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	283, 352, 484, 492, 524
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	3 cut(s)	78, 270, 454
AluI	AGCT	3 cut(s)	78, 270, 454
Alw26I	GTCTC	1 cut(s)	261
AoxI	GGCC	3 cut(s)	99, 232, 432
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	100, 232
AsuC2I	CCSGG	3 cut(s)	42, 66, 103
AsuII	TTCGAA	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	298
BcnI	CCSGG	3 cut(s)	42, 66, 103
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	5 cut(s)	168, 287, 303, 330, 435
BlsI	GCNGC	5 cut(s)	169, 288, 304, 331, 436
Bme1390I	CCNGG	3 cut(s)	42, 66, 103
BmgT120I	GGNCC	2 cut(s)	100, 232
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	3 cut(s)	42, 66, 103
BmsI	GCATC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu14I	TTCGAA	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	3 cut(s)	42, 66, 103
BsaJI	CCNNGG	3 cut(s)	41, 168, 312
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 224, 566
Bse118I	RCCGGY	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	41, 168, 312
BseLI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
BseMII	CTCAG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	190, 443
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	3 cut(s)	170, 302, 437
BshFI	GGCC	3 cut(s)	101, 234, 434
BsiSI	CCGG	5 cut(s)	41, 65, 103, 225, 374
BslFI	GGGAC	2 cut(s)	58, 356
BslI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	2 cut(s)	58, 356
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	101, 234, 434
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1407I	TGTACA	1 cut(s)	537
BspACI	CCGC	6 cut(s)	168, 170, 230, 302, 329, 435
BspANI	GGCC	3 cut(s)	101, 234, 434
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	3 cut(s)	170, 302, 437
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	363
BspT104I	TTCGAA	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	41, 168, 312
Bst6I	CTCTTC	3 cut(s)	318, 363, 411
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	163, 232
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	3 cut(s)	170, 302, 437
BstHHI	GCGC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 167
BstSCI	CCNGG	3 cut(s)	40, 64, 101
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	3 cut(s)	170, 302, 437
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	101, 234, 434
BtgI	CCRYGG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	163, 232
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	100, 232
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	538
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	264
Eam1104I	CTCTTC	3 cut(s)	318, 363, 411
EarI	CTCTTC	3 cut(s)	318, 363, 411
Eco57I	CTGAAG	2 cut(s)	64, 435
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	321, 542, 586
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	2 cut(s)	58, 356
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	5 cut(s)	168, 287, 303, 330, 435
Fsp4HI	GCNGC	5 cut(s)	168, 287, 303, 330, 435
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	168, 287, 303, 330, 435
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	101, 234, 434
HapII	CCGG	5 cut(s)	41, 65, 103, 225, 374
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	114, 214, 262, 344
HpaII	CCGG	5 cut(s)	41, 65, 103, 225, 374
Hpy166II	GTNNAC	2 cut(s)	71, 538
Hpy188I	TCNGA	6 cut(s)	207, 219, 261, 267, 313, 389
Hpy188III	TCNNGA	4 cut(s)	88, 139, 446, 481
Hpy8I	GTNNAC	2 cut(s)	71, 538
Hpy99I	CGWCG	3 cut(s)	52, 75, 89
HpyAV	CCTTC	3 cut(s)	387, 559, 570
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	4, 27, 500, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 167
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	56
HspAI	GCGC	1 cut(s)	165
KspI	CCGCGG	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	4 cut(s)	75, 177, 390, 531
LpnPI	CCDG	9 cut(s)	54, 78, 116, 124, 238, 248, 256, 344, 387
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	56
MboII	GAAGA	6 cut(s)	335, 374, 377, 380, 402, 428
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	3 cut(s)	91, 408, 462
MlyI	GAGTC	4 cut(s)	123, 223, 256, 338
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	11, 399
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	5 cut(s)	41, 65, 103, 225, 374
MspR9I	CCNGG	3 cut(s)	42, 66, 103
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	3 cut(s)	170, 302, 437
MwoI	GCNNNNNNNGC	2 cut(s)	33, 167
NciI	CCSGG	3 cut(s)	42, 66, 103
NlaIV	GGNNCC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	169, 288, 304, 331, 436
PleI	GAGTC	4 cut(s)	122, 222, 256, 338
PpsI	GAGTC	4 cut(s)	122, 222, 256, 338
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	100, 232
PstI	CTGCAG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SacII	CCGCGG	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	11, 399
SatI	GCNGC	5 cut(s)	168, 287, 303, 330, 435
Sau96I	GGNCC	2 cut(s)	100, 232
SchI	GAGTC	4 cut(s)	123, 223, 256, 338
ScrFI	CCNGG	3 cut(s)	42, 66, 103
SetI	ASST	5 cut(s)	59, 80, 272, 300, 456
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	563
SgrBI	CCGCGG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	3 cut(s)	91, 408, 462
SsiI	CCGC	6 cut(s)	168, 170, 230, 302, 329, 435
StyD4I	CCNGG	3 cut(s)	40, 64, 101
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	70, 212, 445, 563
TasI	AATT	3 cut(s)	91, 408, 462
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	4 cut(s)	170, 305, 332, 437
Tru1I	TTAA	2 cut(s)	11, 399
Tru9I	TTAA	2 cut(s)	11, 399
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.