Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

10829703 .. 10832547

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG135700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCATTCGCTGAGCTTCAAGGTTTCCACTGACTACTGCGGTAGGTGTTGTTTTCCGGGTCCGGGAAGGGTTGCGGAGTCGGAGTTCCGGCCCAGACAGGTCCGGTTCGGGTTTAGGGATTTCGGGAGAGGCGTGAGGGTTGCGGCGTGTGCTTCCGAGTCGGAGAGGAACGGGAGTAATGGCTGGAGCGGCAGCCGGAGTTCGAGTCCGACTCCGGGCCCGGGTCCCAGACCGAGTTCGTTTCTGTCTCGGAGCCAGACGTATGCTTTGTTGAAGCAGCAAATGGAGGTTGCTTCGAAATCTGAGGATTACGAAGAGGCGGCGAGGATACGTGACTCGCTGAAGAGGTTAGAGAAGGAAGAGCCGGTTTTGTGGCTCCGGAGGTTAATAAAGGAGGCCGTGGCGGAAGAGAGGTTTGAGGATGCGGCTAATTTTCGAGATGAGCTTAAGGAAATTGCGCCTCACTCTTTTCTGAAATGTTCAAGTGACGCAACAACCTTGGGCATCCGGGTTCAAGTAAGGAGTGTGTACATAGAGGGCCGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATAAGAATTACCAATAACTCTGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTGTCACTGATGCCAATGGAAAATCCGAGAATGTGTGGGGAATTGGTGTTATCGGTCAGCAGCCAGTGATTCTTCCTCAGACTAGTTTTGAATACTCATCTGCATGCCCCTTAAGCACTCCTACTGGTAGAATGGAAGGTGACTTTGAGATGAAACACATCAATAGGTTAAGTTCACAATCGTTTAACGTGGCTATTGCCCCATTTTCCCTCTCCATATTAGGAGACGATGATACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

292

Amino Acids

32.76

Weight (kDa)

8.74

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	91 - 120	1e-07	UvrB/uvrC motif
DUF525	PF04379	181 - 264	5.5e-33	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
AflII	CTTAAG	2 cut(s)	446, 748
AgsI	TTSAA	7 cut(s)	19, 274, 483, 515, 555, 617, 728
AhlI	ACTAGT	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	15, 445
AluI	AGCT	2 cut(s)	15, 445
Alw26I	GTCTC	2 cut(s)	252, 855
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	4 cut(s)	89, 217, 396, 538
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	192, 277, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	7 cut(s)	59, 90, 100, 217, 218, 224, 538
AsuC2I	CCSGG	6 cut(s)	57, 63, 216, 221, 222, 509
AsuHPI	GGTGA	1 cut(s)	788
AsuII	TTCGAA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	59, 100, 224
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	204, 289, 709
BceAI	ACGGC	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	6 cut(s)	57, 63, 216, 221, 222, 509
BcoDI	GTCTC	2 cut(s)	252, 855
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	1 cut(s)	720
BfrI	CTTAAG	2 cut(s)	446, 748
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	7 cut(s)	144, 190, 193, 278, 321, 426, 698
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	7 cut(s)	145, 191, 194, 279, 322, 427, 699
Bme1390I	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 509
Bme18I	GGWCC	3 cut(s)	59, 100, 224
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	7 cut(s)	59, 90, 100, 217, 218, 224, 538
BmiI	GGNNCC	6 cut(s)	60, 219, 225, 226, 254, 377
BmrFI	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 509
BmsI	GCATC	3 cut(s)	412, 513, 637
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	6 cut(s)	57, 63, 216, 221, 222, 509
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	220, 399, 498
BsaWI	WCCGGW	2 cut(s)	102, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 190, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	701, 766
BseAI	TCCGGA	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	220, 399, 498
BseGI	GGATG	2 cut(s)	427, 504
BseLI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
BseMII	CTCAG	2 cut(s)	294, 728
BseNI	ACTGG	2 cut(s)	701, 766
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	204, 289, 709
BshFI	GGCC	4 cut(s)	91, 219, 398, 540
BsiHKCI	CYCGRG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	62, 215, 221, 557
BsmAI	GTCTC	2 cut(s)	252, 855
BsmBI	CGTCTC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	4 cut(s)	91, 219, 398, 540
BsoBI	CYCGRG	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	528
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
BspANI	GGCC	4 cut(s)	91, 219, 398, 540
BspCNI	CTCAG	2 cut(s)	295, 727
BspEI	TCCGGA	1 cut(s)	378
BspLI	GGNNCC	6 cut(s)	60, 219, 225, 226, 254, 377
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	296
BspTI	CTTAAG	2 cut(s)	446, 748
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	701, 766
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	220, 399, 498
BssT1I	CCWWGG	1 cut(s)	498
Bst6I	CTCTTC	4 cut(s)	309, 338, 354, 402
BstAFI	CTTAAG	2 cut(s)	446, 748
BstAUI	TGTACA	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	4 cut(s)	11, 303, 623, 714
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	427, 504
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	252, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	6 cut(s)	55, 61, 214, 219, 220, 507
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	204, 289, 709
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	91, 219, 398, 540
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	427, 504
BtsIMutI	CAGTG	3 cut(s)	27, 642, 708
Cac8I	GCNNGC	1 cut(s)	742
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	7 cut(s)	59, 90, 100, 217, 218, 224, 538
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	1 cut(s)	741
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	11, 303, 623, 714
Eam1104I	CTCTTC	4 cut(s)	309, 338, 354, 402
EarI	CTCTTC	4 cut(s)	309, 338, 354, 402
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	59, 100, 224
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	1 cut(s)	744
FaiI	YATR	6 cut(s)	264, 533, 577, 579, 742, 854
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	740
Fnu4HI	GCNGC	7 cut(s)	144, 190, 193, 278, 321, 426, 698
FokI	GGATG	2 cut(s)	434, 491
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	7 cut(s)	144, 190, 193, 278, 321, 426, 698
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	7 cut(s)	144, 190, 193, 278, 321, 426, 698
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	91, 219, 398, 540
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	744
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	6 cut(s)	77, 158, 205, 211, 335, 706
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	2 cut(s)	529, 812
Hpy188III	TCNNGA	3 cut(s)	124, 379, 437
Hpy8I	GTNNAC	2 cut(s)	529, 812
HpyAV	CCTTC	5 cut(s)	60, 349, 561, 621, 767
HpyCH4IV	ACGT	3 cut(s)	260, 331, 825
HpyCH4V	TGCA	3 cut(s)	4, 575, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
HpyF3I	CTNAG	4 cut(s)	11, 303, 623, 714
HpySE526I	ACGT	3 cut(s)	260, 331, 825
Hsp92II	CATG	1 cut(s)	744
HspAI	GCGC	1 cut(s)	458
KflI	GGGWCCC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	378
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	3 cut(s)	186, 252, 381
Lsp1109I	GCAGC	3 cut(s)	204, 289, 709
LweI	GCATC	3 cut(s)	412, 513, 637
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	3 cut(s)	260, 331, 825
MaeIII	GTNAC	4 cut(s)	332, 485, 640, 776
MbiI	CCGCTC	1 cut(s)	189
MboII	GAAGA	5 cut(s)	326, 355, 371, 419, 701
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	4 cut(s)	430, 453, 588, 678
MlyI	GAGTC	5 cut(s)	86, 167, 205, 214, 329
MmeI	TCCRAC	3 cut(s)	60, 141, 233
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	378
MseI	TTAA	5 cut(s)	386, 447, 749, 806, 822
MslI	CAYNNNNRTG	1 cut(s)	739
MspCI	CTTAAG	2 cut(s)	446, 748
MspR9I	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 509
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
NciI	CCSGG	6 cut(s)	57, 63, 216, 221, 222, 509
NlaIII	CATG	1 cut(s)	744
NlaIV	GGNNCC	6 cut(s)	60, 219, 225, 226, 254, 377
NmuCI	GTSAC	4 cut(s)	332, 485, 640, 776
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	744
NspV	TTCGAA	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	7 cut(s)	145, 191, 194, 279, 322, 427, 699
PleI	GAGTC	5 cut(s)	85, 166, 205, 213, 329
PpsI	GAGTC	5 cut(s)	85, 166, 205, 213, 329
Ppu21I	YACGTR	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	6 cut(s)	60, 219, 225, 226, 254, 377
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	7 cut(s)	59, 90, 100, 217, 218, 224, 538
PspPPI	RGGWCCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	739
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	5 cut(s)	386, 447, 749, 806, 822
SatI	GCNGC	7 cut(s)	144, 190, 193, 278, 321, 426, 698
Sau96I	GGNCC	7 cut(s)	59, 90, 100, 217, 218, 224, 538
SchI	GAGTC	5 cut(s)	86, 167, 205, 214, 329
ScrFI	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 509
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	3 cut(s)	412, 513, 637
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	3 cut(s)	59, 100, 224
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	739
SmlI	CTYRAG	2 cut(s)	446, 748
SmoI	CTYRAG	2 cut(s)	446, 748
SpeI	ACTAGT	1 cut(s)	719
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	4 cut(s)	430, 453, 588, 678
SsiI	CCGC	7 cut(s)	39, 74, 143, 189, 320, 404, 425
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	6 cut(s)	55, 61, 214, 219, 220, 507
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	3 cut(s)	263, 334, 828
TaqI	TCGA	3 cut(s)	203, 296, 436
TaqII	GACCGA	2 cut(s)	247, 680
TasI	AATT	4 cut(s)	430, 453, 588, 678
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	4 cut(s)	146, 192, 323, 428
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	5 cut(s)	386, 447, 749, 806, 822
Tru9I	TTAA	5 cut(s)	386, 447, 749, 806, 822
TscAI	CASTG	3 cut(s)	34, 649, 708
TseFI	GTSAC	4 cut(s)	332, 485, 640, 776
TseI	GCWGC	3 cut(s)	192, 277, 697
Tsp45I	GTSAC	4 cut(s)	332, 485, 640, 776
TspDTI	ATGAA	1 cut(s)	803
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	3 cut(s)	34, 649, 708
Vha464I	CTTAAG	2 cut(s)	446, 748
VpaK11BI	GGWCC	3 cut(s)	59, 100, 224
XceI	RCATGY	1 cut(s)	744
XmaI	CCCGGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.