Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

10119590 .. 10122801

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCATTCGCTGAGCTTCAAGGTTTCCACTGACTACTGCGGGAGGTGTTGTTTTCCGGGTCCGGGAAGGGTTGCGGAGTCGGAGGTCCGGCCCAGACAGGTCCGGTTCGGGTTTAGGGATTTCGGGAGAGGCGTTAGGGTTGCGGCGTGTGCTTCCGAGTCGGAGAGGAACGGGAGTAATGGCTGGAGCGGCAGCCGGAGTTCGAGTCCGACTCCGGGCCCGGGCCCGGGTCCGAGACCGAGTTCGTTTCTGTCTCGGAGCCAGACGTATGCTCTGTTGAAGCAGCAAATGGAGGTTGCTGCGAAATCTGAGGATTATGAAGAGGCGGCGAGGATACGTGACTCGCTGAAGAGGTTAGAGAAGGAAGAGCCGGTTTTGTGGCTCCGGAGGTTGATAAAGGAGGCCGTGGCGGAAGAGAGGTTTGAGGATGCGGCTAATTTTCGAGATGAGCTTAAGGAAATTGCGCCTCACTCTTTTCTGAAATGTTCAAGTGATGCAACGACCTTGGGCATTCGGGTTCAAGTAAGGAGTGTGTACATAGAGGGCCGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATAAGAATTACCAATAACTCCGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATCGTCACTGATGCCAATGGAAAATCCGAGAATGTGTGGGGAATTGGTGTTATCGGTCAGCAGCCAGTGGTTCTTCCTCAGACTAGTTTTGAATACTCATCTGCATGCCCCTTGAGCACTCCTACTGGTAGAATGGTAAGATTTGACGCTTCTCTTGTTTTTTGTTCTTTGATGGAAATCTATGTGACTATTATATTTTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

282

Amino Acids

31.67

Weight (kDa)

9.12

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	93 - 122	1.9e-07	UvrB/uvrC motif
DUF525	PF04379	183 - 259	1.3e-28	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	384
AciI	CCGC	7 cut(s)	39, 74, 143, 189, 326, 410, 431
AclWI	GGATC	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 226, 227, 563
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	7 cut(s)	19, 280, 489, 521, 561, 623, 734
AhlI	ACTAGT	1 cut(s)	725
AluBI	AGCT	2 cut(s)	15, 451
AluI	AGCT	2 cut(s)	15, 451
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	2 cut(s)	229, 258
AlwI	GGATC	1 cut(s)	650
Ama87I	CYCGRG	2 cut(s)	220, 226
Aor13HI	TCCGGA	1 cut(s)	384
AoxI	GGCC	5 cut(s)	89, 217, 223, 402, 544
ApaI	GGGCCC	2 cut(s)	221, 227
ApeKI	GCWGC	4 cut(s)	192, 283, 299, 703
AspLEI	GCGC	1 cut(s)	466
AsuC2I	CCSGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
AvaI	CYCGRG	2 cut(s)	220, 226
AvaII	GGWCC	4 cut(s)	59, 85, 100, 230
BaeGI	GKGCMC	2 cut(s)	221, 227
BanII	GRGCYC	2 cut(s)	221, 227
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	4 cut(s)	204, 286, 295, 715
BccI	CCATC	1 cut(s)	808
BceAI	ACGGC	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	327
BcnI	CCSGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
BcoDI	GTCTC	2 cut(s)	229, 258
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	8 cut(s)	144, 190, 193, 284, 300, 327, 432, 704
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	8 cut(s)	145, 191, 194, 285, 301, 328, 433, 705
Bme1390I	CCNGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
Bme18I	GGWCC	4 cut(s)	59, 85, 100, 230
BmeT110I	CYCGRG	2 cut(s)	220, 226
BmiI	GGNNCC	6 cut(s)	60, 219, 225, 231, 260, 383
BmrFI	CCNGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
BmsI	GCATC	3 cut(s)	418, 484, 643
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	220, 226, 405, 504
BsaWI	WCCGGW	2 cut(s)	102, 384
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 190, 220
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 226, 227, 563
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	707, 772
Bse8I	GATNNNNATC	1 cut(s)	818
BseAI	TCCGGA	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	220, 226, 405, 504
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 226, 227, 563
BseMII	CTCAG	2 cut(s)	300, 734
BseNI	ACTGG	2 cut(s)	707, 772
BseSI	GKGCMC	2 cut(s)	221, 227
BseXI	GCAGC	4 cut(s)	204, 286, 295, 715
BshFI	GGCC	5 cut(s)	91, 219, 225, 404, 546
BsiHKAI	GWGCWC	1 cut(s)	761
BsiHKCI	CYCGRG	2 cut(s)	220, 226
BslI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 226, 227, 563
BsmAI	GTCTC	2 cut(s)	229, 258
BsmI	GAATGC	2 cut(s)	4, 510
BsnI	GGCC	5 cut(s)	91, 219, 225, 404, 546
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	220, 226
Bsp120I	GGGCCC	2 cut(s)	217, 223
Bsp1286I	GDGCHC	3 cut(s)	221, 227, 761
Bsp13I	TCCGGA	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	642
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	7 cut(s)	39, 74, 143, 189, 326, 410, 431
BspANI	GGCC	5 cut(s)	91, 219, 225, 404, 546
BspCNI	CTCAG	2 cut(s)	301, 733
BspEI	TCCGGA	1 cut(s)	384
BspLI	GGNNCC	6 cut(s)	60, 219, 225, 231, 260, 383
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	707, 772
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	4 cut(s)	220, 226, 405, 504
BssMI	GATC	1 cut(s)	642
BssT1I	CCWWGG	1 cut(s)	504
Bst6I	CTCTTC	4 cut(s)	315, 344, 360, 408
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	4 cut(s)	11, 309, 629, 720
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	1 cut(s)	645
BstMAI	GTCTC	2 cut(s)	229, 258
BstMBI	GATC	1 cut(s)	642
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 189, 756
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	7 cut(s)	55, 61, 214, 219, 220, 225, 226
BstSLI	GKGCMC	2 cut(s)	221, 227
BstV1I	GCAGC	4 cut(s)	204, 286, 295, 715
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	5 cut(s)	91, 219, 225, 404, 546
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	3 cut(s)	27, 648, 714
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	370
Cfr9I	CCCGGG	2 cut(s)	220, 226
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	2 cut(s)	747, 843
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	4 cut(s)	11, 309, 629, 720
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
Eam1104I	CTCTTC	4 cut(s)	315, 344, 360, 408
EarI	CTCTTC	4 cut(s)	315, 344, 360, 408
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	221, 227
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	4 cut(s)	59, 85, 100, 230
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	2 cut(s)	220, 226
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	221, 227
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	750, 846
FaiI	YATR	9 cut(s)	270, 318, 539, 583, 585, 748, 825, 836, 844
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FatI	CATG	2 cut(s)	746, 842
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	8 cut(s)	144, 190, 193, 284, 300, 327, 432, 704
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	221, 227
Fsp4HI	GCNGC	8 cut(s)	144, 190, 193, 284, 300, 327, 432, 704
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	8 cut(s)	144, 190, 193, 284, 300, 327, 432, 704
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	5 cut(s)	91, 219, 225, 404, 546
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	750, 846
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	5 cut(s)	77, 158, 205, 211, 341
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188III	TCNNGA	3 cut(s)	124, 385, 443
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	4 cut(s)	60, 355, 567, 627
HpyCH4IV	ACGT	2 cut(s)	266, 337
HpyCH4V	TGCA	4 cut(s)	4, 497, 581, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 189, 756
HpyF3I	CTNAG	4 cut(s)	11, 309, 629, 720
HpySE526I	ACGT	2 cut(s)	266, 337
Hsp92II	CATG	2 cut(s)	750, 846
HspAI	GCGC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	642
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	186, 258, 387
Lsp1109I	GCAGC	4 cut(s)	204, 286, 295, 715
LweI	GCATC	3 cut(s)	418, 484, 643
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	2 cut(s)	266, 337
MaeIII	GTNAC	3 cut(s)	338, 646, 826
MalI	GATC	1 cut(s)	644
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	1 cut(s)	642
MboII	GAAGA	5 cut(s)	332, 361, 377, 425, 707
MhlI	GDGCHC	3 cut(s)	221, 227, 761
MluCI	AATT	4 cut(s)	436, 459, 594, 684
MlyI	GAGTC	5 cut(s)	86, 167, 205, 214, 335
MmeI	TCCRAC	4 cut(s)	60, 141, 233, 633
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	384
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	745
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
Mva1269I	GAATGC	2 cut(s)	4, 510
MwoI	GCNNNNNNNGC	3 cut(s)	149, 189, 756
NciI	CCSGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	2 cut(s)	750, 846
NlaIV	GGNNCC	6 cut(s)	60, 219, 225, 231, 260, 383
NmuCI	GTSAC	3 cut(s)	338, 646, 826
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	750
PaeI	GCATGC	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	2 cut(s)	4, 510
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	8 cut(s)	145, 191, 194, 285, 301, 328, 433, 705
PleI	GAGTC	5 cut(s)	85, 166, 205, 213, 335
PpsI	GAGTC	5 cut(s)	85, 166, 205, 213, 335
Ppu21I	YACGTR	1 cut(s)	338
PspN4I	GGNNCC	6 cut(s)	60, 219, 225, 231, 260, 383
PspOMI	GGGCCC	2 cut(s)	217, 223
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	745
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	8 cut(s)	144, 190, 193, 284, 300, 327, 432, 704
Sau3AI	GATC	1 cut(s)	642
SchI	GAGTC	5 cut(s)	86, 167, 205, 214, 335
ScrFI	CCNGG	7 cut(s)	57, 63, 216, 221, 222, 227, 228
SduI	GDGCHC	3 cut(s)	221, 227, 761
SfaNI	GCATC	3 cut(s)	418, 484, 643
SinI	GGWCC	4 cut(s)	59, 85, 100, 230
SmaI	CCCGGG	2 cut(s)	222, 228
SmiMI	CAYNNNNRTG	1 cut(s)	745
SmlI	CTYRAG	2 cut(s)	452, 754
SmoI	CTYRAG	2 cut(s)	452, 754
SpeI	ACTAGT	1 cut(s)	725
SphI	GCATGC	1 cut(s)	750
SrfI	GCCCGGGC	1 cut(s)	222
Sse9I	AATT	4 cut(s)	436, 459, 594, 684
SsiI	CCGC	7 cut(s)	39, 74, 143, 189, 326, 410, 431
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	7 cut(s)	55, 61, 214, 219, 220, 225, 226
StyI	CCWWGG	1 cut(s)	504
TaiI	ACGT	2 cut(s)	269, 340
TaqI	TCGA	2 cut(s)	203, 442
TaqII	GACCGA	2 cut(s)	253, 686
TasI	AATT	4 cut(s)	436, 459, 594, 684
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	4 cut(s)	146, 192, 329, 434
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	34, 655, 714
TseFI	GTSAC	3 cut(s)	338, 646, 826
TseI	GCWGC	4 cut(s)	192, 283, 299, 703
Tsp45I	GTSAC	3 cut(s)	338, 646, 826
TspDTI	ATGAA	2 cut(s)	333, 831
TspMI	CCCGGG	2 cut(s)	220, 226
TspRI	CASTG	3 cut(s)	34, 655, 714
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	4 cut(s)	59, 85, 100, 230
XceI	RCATGY	1 cut(s)	750
XmaI	CCCGGG	2 cut(s)	220, 226
XspI	CTAG	1 cut(s)	726
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.