Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014736

Physical Location & Seq

Genomic Coordinates Reverse (-)

31276669 .. 31279571

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1172700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCATTCATTAAGCCTCAAGGTCTGCAGTGATTGCTGTCCGGGGACGACGAGAACGTGTTTGCCGGGTCGGCAGAGCTTCAGCGTCGTGAATTCGGAGGTCCGGAACTTGAGAGTCGGTTCGGGGCGTGGGGATTTCAGGAAATCGGGTCGGGTTGTGGCGTGCGCCGCGGAGAGGAGCGGGGGGAATGGGTGGAGGGGAACTCCGAGTTCGAGTCCGAGTTCCGGTGCGGGTCAGAAACCGAGTTCGTTTTTGTCTCGGACTCAGAGCTGGGCTTTGTTGAAGCAGAAAATGGAGGTCGCGGCGAAATCCGAGGATTATGAAGAGGCGGCGAGGATAAGGGACTCGTTGAAGTTGCTGGAAGAAGAAGAGCCGGTTTTGTGGCTCCGAAGAAGGATTAAGGAGGCAATTGCTGAAGAGAGATTTGAGGACGCAGGGAAATATCGAGATGAGTTAAAGGAAATTGCCCCTTACTCTTTCTTGAAATGTTCAAGTGATGCAACAACTTTGGGTATTCGTGTTCAAGTTAGGAGCGTGTACATAGAGGGCAGAAGTCAGCCTTTGAAGGGGCAACACTTCTTTGCATATAGAATACGAATTACCAATAACTCAGATCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATCACGGATGCCAATGGAAAATCCGAAAATGTGTGGGGGATTGGTGTTATTGGTGAACAGCCAGTTATTCTTCCTCAAACGAGTTTTGAATACTCATCAGCATGTCCATTAAGCACTCCTAATGGCAGAATGGAGGGTGAATTTGAGATGAAACACATCAATAGGGTAAGTTCACAAGCGTTTAACGTGGCTATTGCCCCCTTTTCCCTCTCGATATTAGGAGACGACGTTGACACCTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 UVR

Protein Analysis

298

Amino Acids

33.05

Weight (kDa)

8.96

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	94 - 122	6.9e-07	UvrB/uvrC motif
DUF525	PF04379	184 - 267	4.4e-33	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014736)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05440
malus_domestica	MD06G1172700.v1.1 MD14G1178600.v1.1
prunus_persica	Prupe.5G172000_v2.0.a1 Prupe.5G172000_v2.0.a1
pyrus_communis	pycom06g15380 pycom14g14890
rosa_chinensis	RchiOBHm_Chr7g0193391
rosa_laevigata	RLG00000004273
rosa_multiflora	Rmu_sc0040216.1_g000001 Rmu_ssc0000092.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262150
rosa_samantha	Rh7AG135700 Rh7BG136000 Rh7CG139400 Rh7DG137300
rosa_wichuraiana	Rw7G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	180
AccII	CGCG	2 cut(s)	170, 302
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	6 cut(s)	168, 170, 180, 230, 302, 329
AcsI	RAATTY	2 cut(s)	91, 788
AcuI	CTGAAG	2 cut(s)	64, 435
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	8 cut(s)	283, 352, 484, 492, 524, 565, 626, 737
AluBI	AGCT	2 cut(s)	78, 270
AluI	AGCT	2 cut(s)	78, 270
Alw26I	GTCTC	2 cut(s)	261, 864
Aor13HI	TCCGGA	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	91, 788
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	42, 66
AsuHPI	GGTGA	2 cut(s)	713, 797
AvaII	GGWCC	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	42, 66
BcoDI	GTCTC	2 cut(s)	261, 864
BfmI	CTRYAG	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	168, 303, 330
BlsI	GCNGC	3 cut(s)	169, 304, 331
Bme1390I	CCNGG	2 cut(s)	42, 66
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	42, 66
BmsI	GCATC	2 cut(s)	487, 646
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	2 cut(s)	42, 66
BsaJI	CCNNGG	3 cut(s)	41, 168, 312
BsaWI	WCCGGW	2 cut(s)	102, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 224, 566
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	710
BseAI	TCCGGA	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	41, 168, 312
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
BseMII	CTCAG	2 cut(s)	278, 624
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	170, 302
BsiSI	CCGG	5 cut(s)	41, 65, 103, 225, 374
BslFI	GGGAC	2 cut(s)	58, 356
BslI	CCNNNNNNNGG	3 cut(s)	174, 224, 566
BsmAI	GTCTC	2 cut(s)	261, 864
BsmBI	CGTCTC	1 cut(s)	864
BsmFI	GGGAC	2 cut(s)	58, 356
BsmI	GAATGC	1 cut(s)	4
Bsp13I	TCCGGA	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	6 cut(s)	168, 170, 180, 230, 302, 329
BspCNI	CTCAG	2 cut(s)	277, 623
BspEI	TCCGGA	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	170, 302
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	41, 168, 312
BssMI	GATC	1 cut(s)	613
Bst6I	CTCTTC	3 cut(s)	318, 363, 411
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	264, 610, 632
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	2 cut(s)	170, 302
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	2 cut(s)	261, 864
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 70, 167
BstNSI	RCATGY	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	40, 64
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	2 cut(s)	170, 302
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	100
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	2 cut(s)	73, 440
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	1 cut(s)	750
CviJI	RGCY	9 cut(s)	15, 78, 270, 275, 373, 385, 559, 709, 839
CviKI_1	RGCY	9 cut(s)	15, 78, 270, 275, 373, 385, 559, 709, 839
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	264, 610, 632
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	318, 363, 411
EarI	CTCTTC	3 cut(s)	318, 363, 411
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	64, 435
EcoRI	GAATTC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	864
FaeI	CATG	1 cut(s)	753
FaiI	YATR	5 cut(s)	321, 542, 586, 588, 751
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	2 cut(s)	58, 356
FatI	CATG	1 cut(s)	749
FauI	CCCGC	2 cut(s)	173, 223
Fnu4HI	GCNGC	3 cut(s)	168, 303, 330
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	3 cut(s)	168, 303, 330
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	168, 303, 330
GsaI	CCCAGC	1 cut(s)	274
HapII	CCGG	5 cut(s)	41, 65, 103, 225, 374
HgaI	GACGC	2 cut(s)	73, 440
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	753
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	4 cut(s)	114, 214, 262, 344
HpaII	CCGG	5 cut(s)	41, 65, 103, 225, 374
HphI	GGTGA	2 cut(s)	713, 797
Hpy166II	GTNNAC	4 cut(s)	538, 704, 821, 880
Hpy188III	TCNNGA	6 cut(s)	88, 103, 139, 446, 481, 859
Hpy8I	GTNNAC	4 cut(s)	538, 704, 821, 880
Hpy99I	CGWCG	3 cut(s)	52, 89, 878
HpyAV	CCTTC	3 cut(s)	387, 559, 630
HpyCH4IV	ACGT	3 cut(s)	56, 834, 876
HpyCH4V	TGCA	4 cut(s)	4, 27, 500, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 70, 167
HpyF3I	CTNAG	3 cut(s)	264, 610, 632
HpySE526I	ACGT	3 cut(s)	56, 834, 876
Hsp92II	CATG	1 cut(s)	753
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	613
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	177, 390, 531
LweI	GCATC	2 cut(s)	487, 646
MaeII	ACGT	3 cut(s)	56, 834, 876
MalI	GATC	1 cut(s)	615
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	1 cut(s)	613
MboII	GAAGA	7 cut(s)	335, 374, 377, 380, 402, 428, 710
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	5 cut(s)	91, 408, 462, 597, 788
MlyI	GAGTC	4 cut(s)	123, 223, 256, 338
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	5 cut(s)	11, 399, 455, 758, 831
MslI	CAYNNNNRTG	1 cut(s)	748
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	5 cut(s)	41, 65, 103, 225, 374
MspR9I	CCNGG	2 cut(s)	42, 66
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	2 cut(s)	170, 302
MwoI	GCNNNNNNNGC	3 cut(s)	33, 70, 167
NciI	CCSGG	2 cut(s)	42, 66
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	1 cut(s)	753
NlaIV	GGNNCC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	753
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	169, 304, 331
PleI	GAGTC	4 cut(s)	122, 222, 256, 338
PpsI	GAGTC	4 cut(s)	122, 222, 256, 338
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	748
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	5 cut(s)	11, 399, 455, 758, 831
SatI	GCNGC	3 cut(s)	168, 303, 330
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	4 cut(s)	123, 223, 256, 338
ScrFI	CCNGG	2 cut(s)	42, 66
SetI	ASST	9 cut(s)	24, 59, 80, 102, 272, 300, 837, 879, 887
SfaNI	GCATC	2 cut(s)	487, 646
SfcI	CTRYAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	748
SmlI	CTYRAG	2 cut(s)	17, 109
SmoI	CTYRAG	2 cut(s)	17, 109
Sse9I	AATT	5 cut(s)	91, 408, 462, 597, 788
SsiI	CCGC	6 cut(s)	168, 170, 180, 230, 302, 329
StyD4I	CCNGG	2 cut(s)	40, 64
TaiI	ACGT	3 cut(s)	59, 837, 879
TaqI	TCGA	3 cut(s)	212, 445, 860
TasI	AATT	5 cut(s)	91, 408, 462, 597, 788
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	3 cut(s)	170, 305, 332
Tru1I	TTAA	5 cut(s)	11, 399, 455, 758, 831
Tru9I	TTAA	5 cut(s)	11, 399, 455, 758, 831
TscAI	CASTG	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	336, 812
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	91, 788
XceI	RCATGY	1 cut(s)	753
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.