Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005996

Physical Location & Seq

Genomic Coordinates Reverse (-)

3605705 .. 3609956

Gene Structure 4252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06110.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGTACGCCTACGACAACCGTTACGCCGACGCTAACTCCTACCGCGAGCGCCGAAGTGACCTAATGGGTCCAGCGCCTGCGGCGGCGGCGCCACCGGTCTACGGCCGTGGCGGTGGGGTGGCCCCGTACAGGGGCCCAGCGCCTTCGTACGGAGGAGGCGCGGCTGGACCGGTAGGAGATAGGAATGGATACCCTCCTTTCCAGCCCCCGGCGGGGCGGTTCAGCATCGGCCGAGACGGCGGTGGTAGTTTTGGCGGGAGAGGCCGTGGTGGCGGCGGTAGGGGTTTCGATGGAGGCCGTGGGGGTAGGAGCTCTGGTTATAGTCGGGGAGGAGGGAGTTCAGGTTTCGGTGGTGGCAGAGGAGGTGGTAGACATGGTGGTGGTTCATCGAGAGGAGATTTGGATGGTATTGTTCTTCCTAAGCAGGATTTCGGGGATCTGGTTCCTTTTGAGAAGAATTTCTATGTTGAAAGCCCCTCGGTGAAGGCAATGTCAGAGCATGAGGTTGTGGCTTATCGAGGCAGGAGGGAGATTACTGTTGAAGGGCATGATGTCCCCAAGCCGATTCAGACGTTTCGGGATGCAAGTTTCCCTGGTTACTGTCTTGACGCGATAGCTAAGTTGGGTTTTGTTGAACCAACACCAATCCAGGCTCAAGGATGGCCTATGGCACTAAAGGGTAGAGATTTAGTTGGAATTGCTGAGACTGGTTCCGGAAAAACCCTTTCATATCTGCTGCCAGCTCTGGTGCATATTAGTGCTCAGCCTCGATTAGATTCAGGTGACGGCCCTATTGCTTTAGTATTAGCACCTACTCGGGAATTGGCAGTTCAAATTCAACAAGAAGCTGTAAAATTTTGTTCACAAAATTATATTAAGAGTACATGCATTTATGGTGGTGCTCCAAAAGGACCCCAAATACGTGATCTCAGAAGAGGGGTTGAGATTGTTATAGCTACACCTGGCCGACTAATAGATATGTTGGAAGCTCAGCACACAAATTTGCGAAGAGTGACTTACCTAGTTTTGGATGAGGCTGATCGGATGTTGGACATGGGATTTGAGCCGCAGATAAGGAAAATTGTATCCCAAACCCGACCAGATCGGCAGACATTGTATTGGAGTGCTACATGGCCAAGGGAGGTTGAATCTTTAGCAAGGCAGTTTTTACGTAACCCCTATAAGGTAATCATTGGATCAGCAAGTTTGAAAGCAAACCAATCCATAAAGCAAGTTGTTGAAGTTGTGACCGAGTTCGAGAAATATAATAGGCTGCTAAAATTGCTAAAAGACTCAATCGTCGGGAGCCGAATTCTGATATTTGTGGAGACGAAAAAGGGTTGTGACCATGTTACTAAGCAATTGAGAATGGATGGATGGCCAGCTCTGTCCATTCATGGTGATAAAAACCAGGCTGAAAGAGACTGGGTCTTGTCTGAGTTTAAAAGTGGCAGATCTCCTATAATGACTGCCACTGATGTGGCTGCACGTGGTCTTGATGTGAAGGACATAAAATGCGTGATCAATTATGATTTTCCATCAAGCCTTGAGGATTATGTCCACAGGATTGGACGGACGGGACGTGCAGGGGCAACAGGAACTGCTTTAACCTTTTTCACAGAGTCGAATGGTAAATTCGCAAGGGAATTGATCAAGATCCTGCAGGAAGCAGGTCAGGTTGTGAGTCCGGCATTGTCTGCCATGGCACGATCATCTGGTTCTAACTATGGAGGGGGGAATTTCCGTTCGAGAGGGCGGGGAGGCTTTGGTAATCGGTCTGGTTCAAATAATGTTCCTGTTGGTTACAAGAGACCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

607

Amino Acids

65.39

Weight (kDa)

9.7

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	214 - 384	6.1e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	420 - 499	2.6e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63120 AT5G63120 AT5G63120 AT5G63120 AT5G63120
fragaria_vesca	FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110
malus_domestica	MD06G1166600.v1.1 MD14G1172300.v1.1
prunus_persica	Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1
pyrus_communis	pycom06g14930 pycom14g14390
rosa_chinensis	RchiOBHm_Chr7g0192711
rosa_laevigata	RLG00000004335
rosa_multiflora	Rmu_sc0002040.1_g000012
rosa_roxburghii	Rroxscaffold_3G00262730
rosa_rugosa	Rorug07G0004000 Rorug07G0004100
rosa_samantha	Rh7CG133900 Rh7DG131300
rosa_wichuraiana	Rw7G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1298
Acc36I	ACCTGC	1 cut(s)	1661
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	2 cut(s)	99, 370
AccII	CGCG	3 cut(s)	45, 161, 611
AccIII	TCCGGA	1 cut(s)	713
AclWI	GGATC	3 cut(s)	444, 1204, 1651
AcoI	YGGCCR	5 cut(s)	103, 229, 964, 1133, 1379
AcsI	RAATTY	7 cut(s)	457, 834, 854, 1000, 1311, 1634, 1738
AcvI	CACGTG	1 cut(s)	1490
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	4 cut(s)	5, 128, 149, 883
AgeI	ACCGGT	2 cut(s)	94, 169
AgsI	TTSAA	9 cut(s)	470, 542, 635, 833, 839, 1148, 1210, 1241, 1785
AjiI	CACGTC	1 cut(s)	1583
AjnI	CCWGG	4 cut(s)	592, 648, 961, 1410
AleI	CACNNNNGTG	1 cut(s)	1478
AloI	GAACNNNNNNTCC	2 cut(s)	1729, 1761
AluBI	AGCT	7 cut(s)	312, 617, 743, 848, 956, 989, 1385
AluI	AGCT	7 cut(s)	312, 617, 743, 848, 956, 989, 1385
Alw21I	GWGCWC	3 cut(s)	314, 763, 904
Alw26I	GTCTC	5 cut(s)	228, 698, 1322, 1416, 1804
AlwI	GGATC	3 cut(s)	444, 1204, 1651
AlwNI	CAGNNNCTG	2 cut(s)	77, 1601
Ama87I	CYCGRG	1 cut(s)	816
Aor13HI	TCCGGA	1 cut(s)	713
ApaI	GGGCCC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	736, 1273, 1484
ApoI	RAATTY	7 cut(s)	457, 834, 854, 1000, 1311, 1634, 1738
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AsiGI	ACCGGT	2 cut(s)	94, 169
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	5 cut(s)	51, 76, 91, 142, 161
AspS9I	GGNCC	7 cut(s)	68, 121, 133, 134, 167, 788, 911
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	493, 794, 1412
AvaI	CYCGRG	1 cut(s)	816
AvaII	GGWCC	3 cut(s)	68, 167, 911
BaeGI	GKGCMC	1 cut(s)	137
BalI	TGGCCA	2 cut(s)	1135, 1381
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	137, 314
BbrPI	CACGTG	1 cut(s)	1490
Bbv12I	GWGCWC	3 cut(s)	314, 763, 904
BbvI	GCAGC	3 cut(s)	723, 1260, 1471
BccI	CCATC	6 cut(s)	284, 398, 654, 1367, 1371, 1546
BceAI	ACGGC	6 cut(s)	90, 118, 249, 253, 282, 802
BciT130I	CCWGG	4 cut(s)	594, 650, 963, 1412
BciVI	GTATCC	2 cut(s)	182, 1096
BclI	TGATCA	2 cut(s)	1521, 1650
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	5 cut(s)	228, 698, 1322, 1416, 1804
BfaI	CTAG	1 cut(s)	1022
BfmI	CTRYAG	1 cut(s)	1661
BfoI	RGCGCY	4 cut(s)	52, 77, 92, 143
BfuAI	ACCTGC	1 cut(s)	1661
BfuI	GTATCC	2 cut(s)	182, 1096
BglI	GCCNNNNNGGC	2 cut(s)	237, 270
BglII	AGATCT	1 cut(s)	1454
BisI	GCNGC	9 cut(s)	81, 84, 87, 162, 274, 737, 1067, 1274, 1485
BlpI	GCTNAGC	2 cut(s)	762, 990
BlsI	GCNGC	9 cut(s)	82, 85, 88, 163, 275, 738, 1068, 1275, 1486
Bme1390I	CCNGG	5 cut(s)	209, 594, 650, 963, 1412
Bme18I	GGWCC	3 cut(s)	68, 167, 911
BmeT110I	CYCGRG	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	1583
BmgT120I	GGNCC	7 cut(s)	68, 121, 133, 134, 167, 788, 911
BmiI	GGNNCC	9 cut(s)	69, 90, 123, 134, 135, 444, 712, 913, 1307
BmrFI	CCNGG	5 cut(s)	209, 594, 650, 963, 1412
BmrI	ACTGGG	1 cut(s)	1435
BmsI	GCATC	2 cut(s)	234, 571
BmuI	ACTGGG	1 cut(s)	1435
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	2 cut(s)	762, 990
BpuEI	CTTGAG	2 cut(s)	639, 1568
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	3 cut(s)	923, 1172, 1490
BsaBI	GATNNNNATC	1 cut(s)	1655
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	1804
BsaJI	CCNNGG	9 cut(s)	106, 207, 265, 298, 477, 592, 1136, 1701, 1814
BsaWI	WCCGGW	3 cut(s)	94, 169, 713
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 50, 250, 280, 301, 328, 331, 358
Bse118I	RCCGGY	2 cut(s)	94, 169
Bse1I	ACTGG	2 cut(s)	712, 1430
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	1655
BseAI	TCCGGA	1 cut(s)	713
BseBI	CCWGG	4 cut(s)	594, 650, 963, 1412
BseDI	CCNNGG	9 cut(s)	106, 207, 265, 298, 477, 592, 1136, 1701, 1814
BseGI	GGATG	7 cut(s)	409, 586, 665, 1036, 1050, 1378, 1382
BseJI	GATNNNNATC	1 cut(s)	1655
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	5 cut(s)	693, 776, 943, 1004, 1428
BseNI	ACTGG	2 cut(s)	712, 1430
BseRI	GAGGAG	4 cut(s)	168, 345, 375, 408
BseSI	GKGCMC	1 cut(s)	137
BseX3I	CGGCCG	2 cut(s)	103, 229
BseXI	GCAGC	3 cut(s)	723, 1260, 1471
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	2 cut(s)	1470, 1605
Bsh1236I	CGCG	3 cut(s)	45, 161, 611
Bsh1285I	CGRYCG	2 cut(s)	106, 232
BshNI	GGYRCC	1 cut(s)	88
BshTI	ACCGGT	2 cut(s)	94, 169
BsiEI	CGRYCG	2 cut(s)	106, 232
BsiHKAI	GWGCWC	3 cut(s)	314, 763, 904
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	5 cut(s)	95, 170, 209, 714, 1688
BsiWI	CGTACG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	539, 1593
BsmAI	GTCTC	5 cut(s)	228, 698, 1322, 1416, 1804
BsmBI	CGTCTC	2 cut(s)	228, 1322
BsmFI	GGGAC	2 cut(s)	539, 1593
Bso31I	GGTCTC	1 cut(s)	1804
BsoBI	CYCGRG	1 cut(s)	816
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	4 cut(s)	137, 314, 763, 904
Bsp13I	TCCGGA	1 cut(s)	713
Bsp1720I	GCTNAGC	2 cut(s)	762, 990
Bsp19I	CCATGG	1 cut(s)	1701
BspCNI	CTCAG	5 cut(s)	694, 775, 942, 1003, 1429
BspEI	TCCGGA	1 cut(s)	713
BspFNI	CGCG	3 cut(s)	45, 161, 611
BspLI	GGNNCC	9 cut(s)	69, 90, 123, 134, 135, 444, 712, 913, 1307
BspMAI	CTGCAG	1 cut(s)	1665
BspMI	ACCTGC	1 cut(s)	1661
BspPI	GGATC	3 cut(s)	444, 1204, 1651
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	1804
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	2 cut(s)	94, 169
BsrI	ACTGG	2 cut(s)	712, 1430
BssAI	RCCGGY	2 cut(s)	94, 169
BssECI	CCNNGG	9 cut(s)	106, 207, 265, 298, 477, 592, 1136, 1701, 1814
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	3 cut(s)	1136, 1701, 1814
Bst2UI	CCWGG	4 cut(s)	594, 650, 963, 1412
Bst4CI	ACNGT	3 cut(s)	20, 538, 602
Bst6I	CTCTTC	2 cut(s)	928, 1003
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	1697
BstBAI	YACGTR	3 cut(s)	923, 1172, 1490
BstC8I	GCNNGC	4 cut(s)	47, 78, 741, 1383
BstDEI	CTNAG	8 cut(s)	420, 618, 702, 762, 929, 990, 1356, 1437
BstDSI	CCRYGG	4 cut(s)	106, 265, 298, 1701
BstF5I	GGATG	7 cut(s)	409, 586, 665, 1036, 1050, 1378, 1382
BstFNI	CGCG	3 cut(s)	45, 161, 611
BstH2I	RGCGCY	4 cut(s)	52, 77, 92, 143
BstHHI	GCGC	5 cut(s)	51, 76, 91, 142, 161
BstMAI	GTCTC	5 cut(s)	228, 698, 1322, 1416, 1804
BstMCI	CGRYCG	2 cut(s)	106, 232
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 86, 237, 261, 270, 1282, 1697
BstNI	CCWGG	4 cut(s)	594, 650, 963, 1412
BstNSI	RCATGY	1 cut(s)	888
BstSCI	CCNGG	5 cut(s)	207, 592, 648, 961, 1410
BstSFI	CTRYAG	1 cut(s)	1661
BstSLI	GKGCMC	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	1172
BstUI	CGCG	3 cut(s)	45, 161, 611
BstV1I	GCAGC	3 cut(s)	723, 1260, 1471
BstX2I	RGATCY	3 cut(s)	436, 1454, 1656
BstXI	CCANNNNNNTGG	2 cut(s)	1480, 1568
BstYI	RGATCY	3 cut(s)	436, 1454, 1656
BstZI	CGGCCG	2 cut(s)	103, 229
BsuI	GTATCC	2 cut(s)	182, 1096
BtgI	CCRYGG	4 cut(s)	106, 265, 298, 1701
BtrI	CACGTC	1 cut(s)	1583
BtsCI	GGATG	7 cut(s)	409, 586, 665, 1036, 1050, 1378, 1382
BtsIMutI	CAGTG	1 cut(s)	1473
BveI	ACCTGC	1 cut(s)	1661
Cac8I	GCNNGC	4 cut(s)	47, 78, 741, 1383
CaiI	CAGNNNCTG	2 cut(s)	77, 1601
CfoI	GCGC	5 cut(s)	51, 76, 91, 142, 161
Cfr10I	RCCGGY	2 cut(s)	94, 169
Cfr13I	GGNCC	7 cut(s)	68, 121, 133, 134, 167, 788, 911
CseI	GACGC	2 cut(s)	38, 617
Csp6I	GTAC	4 cut(s)	4, 127, 148, 882
CspAI	ACCGGT	2 cut(s)	94, 169
CviAII	CATG	9 cut(s)	374, 500, 548, 885, 1054, 1131, 1349, 1397, 1702
CviQI	GTAC	4 cut(s)	4, 127, 148, 882
DdeI	CTNAG	8 cut(s)	420, 618, 702, 762, 929, 990, 1356, 1437
DinI	GGCGCC	1 cut(s)	90
DraI	TTTAAA	1 cut(s)	1444
DrdI	GACNNNNNNGTC	1 cut(s)	1298
DseDI	GACNNNNNNGTC	1 cut(s)	1298
EaeI	YGGCCR	5 cut(s)	103, 229, 964, 1133, 1379
EagI	CGGCCG	2 cut(s)	103, 229
Eam1104I	CTCTTC	2 cut(s)	928, 1003
EarI	CTCTTC	2 cut(s)	928, 1003
Ecl136II	GAGCTC	1 cut(s)	312
EclXI	CGGCCG	2 cut(s)	103, 229
Eco105I	TACGTA	1 cut(s)	1172
Eco130I	CCWWGG	3 cut(s)	1136, 1701, 1814
Eco24I	GRGCYC	2 cut(s)	137, 314
Eco31I	GGTCTC	1 cut(s)	1804
Eco47I	GGWCC	3 cut(s)	68, 167, 911
Eco52I	CGGCCG	2 cut(s)	103, 229
Eco53kI	GAGCTC	1 cut(s)	312
Eco72I	CACGTG	1 cut(s)	1490
Eco88I	CYCGRG	1 cut(s)	816
EcoICRI	GAGCTC	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	133, 911
EcoRI	GAATTC	1 cut(s)	1311
EcoRII	CCWGG	4 cut(s)	592, 648, 961, 1410
EcoT14I	CCWWGG	3 cut(s)	1136, 1701, 1814
EcoT22I	ATGCAT	1 cut(s)	890
EcoT38I	GRGCYC	2 cut(s)	137, 314
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	1136, 1701, 1814
Esp3I	CGTCTC	2 cut(s)	228, 1322
FaeI	CATG	9 cut(s)	377, 503, 551, 888, 1057, 1134, 1352, 1400, 1705
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	2 cut(s)	539, 1593
FatI	CATG	9 cut(s)	373, 499, 547, 884, 1053, 1130, 1348, 1396, 1701
FauI	CCCGC	3 cut(s)	205, 248, 1749
FbaI	TGATCA	2 cut(s)	1521, 1650
FblI	GTMKAC	2 cut(s)	99, 370
Fnu4HI	GCNGC	9 cut(s)	81, 84, 87, 162, 274, 737, 1067, 1274, 1485
FokI	GGATG	7 cut(s)	416, 593, 672, 1043, 1057, 1385, 1389
FriOI	GRGCYC	2 cut(s)	137, 314
Fsp4HI	GCNGC	9 cut(s)	81, 84, 87, 162, 274, 737, 1067, 1274, 1485
FspBI	CTAG	1 cut(s)	1022
GlaI	GCGC	5 cut(s)	50, 75, 90, 141, 160
GluI	GCNGC	9 cut(s)	81, 84, 87, 162, 274, 737, 1067, 1274, 1485
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	4 cut(s)	52, 77, 92, 143
HapII	CCGG	5 cut(s)	95, 170, 209, 714, 1688
HgaI	GACGC	2 cut(s)	38, 617
HhaI	GCGC	5 cut(s)	51, 76, 91, 142, 161
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	9 cut(s)	377, 503, 551, 888, 1057, 1134, 1352, 1400, 1705
Hin6I	GCGC	5 cut(s)	49, 74, 89, 140, 159
HinP1I	GCGC	5 cut(s)	49, 74, 89, 140, 159
HinfI	GANTC	6 cut(s)	565, 776, 1148, 1292, 1622, 1684
HpaII	CCGG	5 cut(s)	95, 170, 209, 714, 1688
HphI	GGTGA	3 cut(s)	493, 794, 1412
Hpy166II	GTNNAC	4 cut(s)	100, 371, 863, 1561
Hpy188I	TCNGA	6 cut(s)	496, 570, 932, 1044, 1317, 1438
Hpy8I	GTNNAC	4 cut(s)	100, 371, 863, 1561
Hpy99I	CGWCG	2 cut(s)	32, 1304
HpyAV	CCTTC	4 cut(s)	153, 478, 536, 1498
HpyCH4III	ACNGT	3 cut(s)	20, 538, 602
HpyCH4IV	ACGT	5 cut(s)	572, 922, 1171, 1489, 1582
HpyCH4V	TGCA	6 cut(s)	584, 751, 888, 1487, 1586, 1663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 86, 237, 261, 270, 1282, 1697
HpyF3I	CTNAG	8 cut(s)	420, 618, 702, 762, 929, 990, 1356, 1437
HpySE526I	ACGT	5 cut(s)	572, 922, 1171, 1489, 1582
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	9 cut(s)	377, 503, 551, 888, 1057, 1134, 1352, 1400, 1705
HspAI	GCGC	5 cut(s)	49, 74, 89, 140, 159
KasI	GGCGCC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	713
Ksp22I	TGATCA	2 cut(s)	1521, 1650
LmnI	GCTCC	3 cut(s)	309, 907, 1305
Lsp1109I	GCAGC	3 cut(s)	723, 1260, 1471
LweI	GCATC	2 cut(s)	234, 571
MaeI	CTAG	1 cut(s)	1022
MaeII	ACGT	5 cut(s)	572, 922, 1171, 1489, 1582
MboII	GAAGA	4 cut(s)	407, 466, 945, 1020
MfeI	CAATTG	1 cut(s)	1361
MflI	RGATCY	3 cut(s)	436, 1454, 1656
MhlI	GDGCHC	4 cut(s)	137, 314, 763, 904
MlsI	TGGCCA	2 cut(s)	1135, 1381
MluNI	TGGCCA	2 cut(s)	1135, 1381
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	3 cut(s)	1286, 1631, 1693
MmeI	TCCRAC	3 cut(s)	673, 963, 1029
Mox20I	TGGCCA	2 cut(s)	1135, 1381
Mph1103I	ATGCAT	1 cut(s)	890
MroI	TCCGGA	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	458
MscI	TGGCCA	2 cut(s)	1135, 1381
MseI	TTAA	3 cut(s)	876, 1443, 1607
MslI	CAYNNNNRTG	3 cut(s)	378, 756, 1478
Msp20I	TGGCCA	2 cut(s)	1135, 1381
MspI	CCGG	5 cut(s)	95, 170, 209, 714, 1688
MspR9I	CCNGG	5 cut(s)	209, 594, 650, 963, 1412
MunI	CAATTG	1 cut(s)	1361
MvaI	CCWGG	4 cut(s)	594, 650, 963, 1412
MvnI	CGCG	3 cut(s)	45, 161, 611
MwoI	GCNNNNNNNGC	7 cut(s)	80, 86, 237, 261, 270, 1282, 1697
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	1701
NlaIII	CATG	9 cut(s)	377, 503, 551, 888, 1057, 1134, 1352, 1400, 1705
NlaIV	GGNNCC	9 cut(s)	69, 90, 123, 134, 135, 444, 712, 913, 1307
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	5 cut(s)	56, 782, 1012, 1246, 1343
NsiI	ATGCAT	1 cut(s)	890
NspI	RCATGY	1 cut(s)	888
OliI	CACNNNNGTG	1 cut(s)	1478
PcsI	WCGNNNNNNNCGW	1 cut(s)	1579
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	565, 776, 1148
Pfl23II	CGTACG	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	1427
PinAI	ACCGGT	2 cut(s)	94, 169
PkrI	GCNGC	9 cut(s)	82, 85, 88, 163, 275, 738, 1068, 1275, 1486
PleI	GAGTC	3 cut(s)	1286, 1630, 1692
PluTI	GGCGCC	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	1490
PmlI	CACGTG	1 cut(s)	1490
PpsI	GAGTC	3 cut(s)	1286, 1630, 1692
Ppu21I	YACGTR	3 cut(s)	923, 1172, 1490
PpuMI	RGGWCCY	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	911
Psp6I	CCWGG	4 cut(s)	592, 648, 961, 1410
PspCI	CACGTG	1 cut(s)	1490
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	4 cut(s)	592, 648, 961, 1410
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	9 cut(s)	69, 90, 123, 134, 135, 444, 712, 913, 1307
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	7 cut(s)	68, 121, 133, 134, 167, 788, 911
PspPPI	RGGWCCY	1 cut(s)	911
PstI	CTGCAG	1 cut(s)	1665
PstNI	CAGNNNCTG	2 cut(s)	77, 1601
PsuI	RGATCY	3 cut(s)	436, 1454, 1656
PsyI	GACNNNGTC	1 cut(s)	1427
RsaI	GTAC	4 cut(s)	5, 128, 149, 883
RsaNI	GTAC	4 cut(s)	4, 127, 148, 882
RseI	CAYNNNNRTG	3 cut(s)	378, 756, 1478
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	876, 1443, 1607
SatI	GCNGC	9 cut(s)	81, 84, 87, 162, 274, 737, 1067, 1274, 1485
Sau96I	GGNCC	7 cut(s)	68, 121, 133, 134, 167, 788, 911
SbfI	CCTGCAGG	1 cut(s)	1665
SchI	GAGTC	3 cut(s)	1286, 1631, 1693
ScrFI	CCNGG	5 cut(s)	209, 594, 650, 963, 1412
SdaI	CCTGCAGG	1 cut(s)	1665
SduI	GDGCHC	4 cut(s)	137, 314, 763, 904
SfaNI	GCATC	2 cut(s)	234, 571
SfcI	CTRYAG	1 cut(s)	1661
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	3 cut(s)	68, 167, 911
SmiMI	CAYNNNNRTG	3 cut(s)	378, 756, 1478
SmlI	CTYRAG	2 cut(s)	654, 1547
SmoI	CTYRAG	2 cut(s)	654, 1547
SnaBI	TACGTA	1 cut(s)	1172
Sse8387I	CCTGCAGG	1 cut(s)	1665
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	1022
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	5 cut(s)	207, 592, 648, 961, 1410
StyI	CCWWGG	3 cut(s)	1136, 1701, 1814
TaaI	ACNGT	3 cut(s)	20, 538, 602
TaiI	ACGT	5 cut(s)	575, 925, 1174, 1492, 1585
TaqI	TCGA	7 cut(s)	288, 389, 517, 769, 1257, 1625, 1748
TaqII	GACCGA	2 cut(s)	1265, 1764
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	6 cut(s)	83, 86, 89, 164, 276, 1069
TfiI	GAWTC	3 cut(s)	565, 776, 1148
Tru1I	TTAA	3 cut(s)	876, 1443, 1607
Tru9I	TTAA	3 cut(s)	876, 1443, 1607
TscAI	CASTG	1 cut(s)	1480
TseFI	GTSAC	5 cut(s)	56, 782, 1012, 1246, 1343
TseI	GCWGC	3 cut(s)	736, 1273, 1484
Tsp45I	GTSAC	5 cut(s)	56, 782, 1012, 1246, 1343
TspDTI	ATGAA	3 cut(s)	375, 717, 1385
TspGWI	ACGGA	3 cut(s)	165, 1588, 1733
TspRI	CASTG	1 cut(s)	1480
Tth111I	GACNNNGTC	1 cut(s)	1427
VpaK11BI	GGWCC	3 cut(s)	68, 167, 911
XapI	RAATTY	7 cut(s)	457, 834, 854, 1000, 1311, 1634, 1738
XceI	RCATGY	1 cut(s)	888
XmiI	GTMKAC	2 cut(s)	99, 370
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	1022
Zsp2I	ATGCAT	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.