Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005996

Physical Location & Seq

Genomic Coordinates Reverse (-)

56723762 .. 56727851

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGTACGCCTACGACAACCGATACTCCGACGCAAGCTCCTACCGCGAGCGCCGAAGTGACCTAATGGGTCCAGCGCCTGCGGCGGCAGCGCCACCGATCTACGGCCGTGGCGGTGGGGTAGCCCCGTACAGGGGCTCAGCGCCTCCGGTGTCTTCTTATGGAGGAGGAGGGGCTGGACCGGTAGGAGCTCCGGGAGAGAGGAATGGATACCCTCCTTTCCAGCCCCCGGCGGGTCGGTTCAGTATGGGCCGAGACGGCGGTGGTAGTTTTGGCGGGAGAGGCCGTGGCGGCGGCGCTAGGGGTTTTGATGGATCCCGTGGGGGTGGTAGAAGCTCCGGTTATAGTCGAGGTGGTGGAAGTTCGGGTTACGGGGGCGGGCGTGGAGGCGGTGGTAGACACGGTGGTGGATCATCAAGAGGTGACCTGGATGGCATTGTTCTTCCCAAGCAGGATTTTGGGAGCTTAGTTCCTTTTGAGAAGAATTTCTACATGGAGAGCCCTTCGGTGAAGGCAATGTCAGAGCATGAAGTTTTGGCGTATAGAGCCAGGAGGGAGATTACGGTTGATGGGCATGATGTCCCGAAGCCAATTCAGACGTTTCGGGATGCAAGTTTCCCTGGTTACTGTCTTGACGTGATTGCCAAGTTGGGTTTTGTTGAACCAACACCAATTCAAGCTCAAGGATGGCCAATGGCACTAAAGGGTAGAGATTTAGTTGGAATTGCTGAGACTGGTTCCGGGAAAACCCTTTCATATCTACTACCAGCTCTGGTACATATTAGTGCTCAGCCTCGATTAGCTCAAGGTGATGGTCCTATTGCATTAGTATTAGCACCTACTCGAGAATTGGCAGTTCAAATTCAAGAAGAAGCTGTAAAATTTTGTTCACAAAATTATATTAGGAGTACTTGCATTTATGGTGGTGCTCCAAAAGGATCCCAAATACGCGATCTTAGAAGAGGGGTTGAGATTGTGATAGCTACACCTGGCAGACTAATAGATATGTTGGAAGCTCAGCACACAAATTTGCGGAGAGTGACTTACCTAGTTTTGGATGAGGCTGATAGGATGTTGGACATGGGATTTGAGCCGCAGATAAGGAAAATTGTATCTCAAACCCGACCAGATCGGCAGACATTGTATTGGAGTGCCACATGGCCAAGGGAGGTCGAATCCTTAGCAAGGCAGTTTTTGCGTAACCCCTATAAGGTAATTATTGGATCAGCAAGTCTGAAAGCAAACCAATCCATAAAGCAAGTTGTTGAAGTTGTGTCTGAGTTCGACAAATATAATAGGCTGCTCAAATTGCTAAAAGACTCGATCGTTGGGAGCCGAATTCTGATATTTGTGGAGACGAAAAAGGGTTGTGACCATGTCACTAAGCAATTGAGGATGGATGGATGGCCAGCTCTGTCCATTCATGGTGATAAAAACCAGGCTGAAAGAGATTGGGTCTTGGCTGAGTTTAAAAGTGGCAGATCTCCTATAATGACTGCCACTGATGTGGCTGCACGGGGTCTTGGTAGGATTACTGTGCCATCATATCTGATGATCGGGACTTCTACTATTTTGCTATCCTTTAAGCACCATGCTATCTACTTCAGCAGGGGCATAAGTTGGATTGAGGAGCAATATTGTTATGGAGCTGGTTACCCTCGCAGCCCGGTTGACTCACATGCTTATTCATTTGATTGGATATGGGAAGTGGTTGTGGTGAAGCTGCTCCTTATCCCTGCTAGGATTGGACGAACGGGACGTGCAGGGGCAACAGGAACTGCTTTGACCTTTTTCACAGAGTCAAATGGTAAATTCGCTAGGGAACTGATCAAGATCCTGCAGGAAGCAGGTCAGGTTGTGAGTCCGGCATTGTCTGCCATGGCACGATCATCTGGTTTCAACTCTGGAGGGGGGAACTTCCGCTCTAGAGGACGAGGAGGCTTTGGTAATCGGATTTCTGGTTCAAATACTGTTCCTGTTGGTTATAAGAGACCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

665

Amino Acids

71.83

Weight (kDa)

9.79

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	222 - 392	7.8e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	429 - 507	3.3e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63120 AT5G63120 AT5G63120 AT5G63120 AT5G63120
fragaria_vesca	FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110
malus_domestica	MD06G1166600.v1.1 MD14G1172300.v1.1
prunus_persica	Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1
pyrus_communis	pycom06g14930 pycom14g14390
rosa_chinensis	RchiOBHm_Chr7g0192711
rosa_laevigata	RLG00000004335
rosa_multiflora	Rmu_sc0002040.1_g000012
rosa_roxburghii	Rroxscaffold_3G00262730
rosa_rugosa	Rorug07G0004000 Rorug07G0004100
rosa_samantha	Rh7CG133900 Rh7DG131300
rosa_wichuraiana	Rw7G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1983
Acc36I	ACCTGC	1 cut(s)	1835
AccBSI	CCGCTC	1 cut(s)	1920
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	2 cut(s)	45, 948
AclWI	GGATC	7 cut(s)	306, 319, 415, 930, 943, 1228, 1825
AcoI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
AcsI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1808
AcuI	CTGAAG	1 cut(s)	1585
AfaI	GTAC	4 cut(s)	5, 128, 774, 907
AfiI	CCNNNNNNNGG	9 cut(s)	101, 129, 130, 131, 226, 230, 1051, 1182, 1207
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	7 cut(s)	659, 674, 857, 863, 1265, 1897, 1962
AjiI	CACGTC	2 cut(s)	634, 1757
AjnI	CCWGG	5 cut(s)	423, 545, 616, 985, 1434
AleI	CACNNNNGTG	2 cut(s)	402, 1502
AloI	GAACNNNNNNTCC	2 cut(s)	1942, 1974
Alw21I	GWGCWC	3 cut(s)	190, 787, 928
Alw26I	GTCTC	4 cut(s)	246, 722, 1346, 1981
AlwI	GGATC	7 cut(s)	306, 319, 415, 930, 943, 1228, 1825
AlwNI	CAGNNNCTG	2 cut(s)	77, 1775
Ama87I	CYCGRG	1 cut(s)	840
AoxI	GGCC	6 cut(s)	103, 247, 280, 686, 1157, 1403
ApeKI	GCWGC	5 cut(s)	86, 1297, 1508, 1659, 1720
ApoI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1808
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
AsiGI	ACCGGT	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	5 cut(s)	51, 76, 91, 142, 296
AspS9I	GGNCC	4 cut(s)	68, 176, 247, 812
AsuC2I	CCSGG	4 cut(s)	192, 227, 739, 1664
AsuHPI	GGTGA	5 cut(s)	431, 517, 818, 1436, 1726
AvaI	CYCGRG	1 cut(s)	840
AvaII	GGWCC	3 cut(s)	68, 176, 812
BalI	TGGCCA	3 cut(s)	688, 1159, 1405
BamHI	GGATCC	2 cut(s)	311, 935
BanII	GRGCYC	3 cut(s)	137, 190, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	3 cut(s)	190, 787, 928
BbvI	GCAGC	5 cut(s)	98, 1284, 1495, 1671, 1707
BccI	CCATC	9 cut(s)	302, 422, 560, 678, 803, 1387, 1391, 1395, 1546
BceAI	ACGGC	4 cut(s)	90, 118, 267, 271
BciT130I	CCWGG	5 cut(s)	425, 547, 618, 987, 1436
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	1824
BcnI	CCSGG	4 cut(s)	192, 227, 739, 1664
BcoDI	GTCTC	4 cut(s)	246, 722, 1346, 1981
BfaI	CTAG	5 cut(s)	297, 1046, 1737, 1815, 1923
BfmI	CTRYAG	1 cut(s)	1835
BfoI	RGCGCY	5 cut(s)	52, 77, 92, 143, 297
BfuAI	ACCTGC	1 cut(s)	1835
BfuI	GTATCC	1 cut(s)	200
BglI	GCCNNNNNGGC	2 cut(s)	255, 288
BglII	AGATCT	1 cut(s)	1478
BlpI	GCTNAGC	3 cut(s)	136, 786, 1014
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	9 cut(s)	192, 227, 425, 547, 618, 739, 987, 1436, 1664
Bme18I	GGWCC	3 cut(s)	68, 176, 812
BmeT110I	CYCGRG	1 cut(s)	840
BmgBI	CACGTC	2 cut(s)	634, 1757
BmgT120I	GGNCC	4 cut(s)	68, 176, 247, 812
BmiI	GGNNCC	5 cut(s)	69, 313, 736, 937, 1331
BmrFI	CCNGG	9 cut(s)	192, 227, 425, 547, 618, 739, 987, 1436, 1664
BmsI	GCATC	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	1923
Bpu10I	CCTNAGC	1 cut(s)	1177
Bpu1102I	GCTNAGC	3 cut(s)	136, 786, 1014
BpuEI	CTTGAG	2 cut(s)	663, 786
BpuMI	CCSGG	4 cut(s)	192, 227, 739, 1664
BsaBI	GATNNNNATC	1 cut(s)	1829
BsaI	GGTCTC	1 cut(s)	1981
BsaJI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1875, 1991
BsaWI	WCCGGW	3 cut(s)	145, 178, 335
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 20, 38, 50, 268, 298
Bsc4I	CCNNNNNNNGG	9 cut(s)	101, 129, 130, 131, 226, 230, 1051, 1182, 1207
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	1829
BseBI	CCWGG	5 cut(s)	425, 547, 618, 987, 1436
BseDI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1875, 1991
BseGI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BseJI	GATNNNNATC	1 cut(s)	1829
BseLI	CCNNNNNNNGG	9 cut(s)	101, 129, 130, 131, 226, 230, 1051, 1182, 1207
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	6 cut(s)	150, 717, 800, 1028, 1266, 1452
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	4 cut(s)	177, 180, 1640, 1947
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	98, 1284, 1495, 1671, 1707
BsgI	GTGCAG	2 cut(s)	1494, 1779
Bsh1236I	CGCG	2 cut(s)	45, 948
Bsh1285I	CGRYCG	2 cut(s)	106, 1323
BshFI	GGCC	6 cut(s)	105, 249, 282, 688, 1159, 1405
BshTI	ACCGGT	1 cut(s)	178
BsiEI	CGRYCG	2 cut(s)	106, 1323
BsiHKAI	GWGCWC	3 cut(s)	190, 787, 928
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1664, 1862
BslFI	GGGAC	3 cut(s)	563, 1570, 1767
BslI	CCNNNNNNNGG	9 cut(s)	101, 129, 130, 131, 226, 230, 1051, 1182, 1207
BsmAI	GTCTC	4 cut(s)	246, 722, 1346, 1981
BsmBI	CGTCTC	2 cut(s)	246, 1346
BsmFI	GGGAC	3 cut(s)	563, 1570, 1767
BsnI	GGCC	6 cut(s)	105, 249, 282, 688, 1159, 1405
Bso31I	GGTCTC	1 cut(s)	1981
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	5 cut(s)	137, 190, 500, 787, 928
Bsp1720I	GCTNAGC	3 cut(s)	136, 786, 1014
Bsp19I	CCATGG	1 cut(s)	1875
BspANI	GGCC	6 cut(s)	105, 249, 282, 688, 1159, 1405
BspCNI	CTCAG	6 cut(s)	149, 718, 799, 1027, 1267, 1453
BspFNI	CGCG	2 cut(s)	45, 948
BspLI	GGNNCC	5 cut(s)	69, 313, 736, 937, 1331
BspMAI	CTGCAG	1 cut(s)	1839
BspMI	ACCTGC	1 cut(s)	1835
BspPI	GGATC	7 cut(s)	306, 319, 415, 930, 943, 1228, 1825
BspTNI	GGTCTC	1 cut(s)	1981
BsrBI	CCGCTC	1 cut(s)	1920
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1875, 1991
BssT1I	CCWWGG	3 cut(s)	1160, 1875, 1991
Bst2UI	CCWGG	5 cut(s)	425, 547, 618, 987, 1436
Bst4CI	ACNGT	5 cut(s)	401, 562, 626, 1534, 1969
Bst6I	CTCTTC	1 cut(s)	952
BstAPI	GCANNNNNTGC	2 cut(s)	1192, 1871
BstC8I	GCNNGC	5 cut(s)	34, 47, 78, 377, 1407
BstDSI	CCRYGG	4 cut(s)	106, 283, 316, 1875
BstEII	GGTNACC	2 cut(s)	419, 1649
BstENI	CCTNNNNNAGG	1 cut(s)	1180
BstF5I	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BstFNI	CGCG	2 cut(s)	45, 948
BstH2I	RGCGCY	5 cut(s)	52, 77, 92, 143, 297
BstHHI	GCGC	5 cut(s)	51, 76, 91, 142, 296
BstMAI	GTCTC	4 cut(s)	246, 722, 1346, 1981
BstMCI	CGRYCG	2 cut(s)	106, 1323
BstNI	CCWGG	5 cut(s)	425, 547, 618, 987, 1436
BstNSI	RCATGY	1 cut(s)	1679
BstPI	GGTNACC	2 cut(s)	419, 1649
BstSCI	CCNGG	9 cut(s)	190, 225, 423, 545, 616, 737, 985, 1434, 1662
BstSFI	CTRYAG	1 cut(s)	1835
BstUI	CGCG	2 cut(s)	45, 948
BstV1I	GCAGC	5 cut(s)	98, 1284, 1495, 1671, 1707
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	4 cut(s)	311, 935, 1478, 1830
BstXI	CCANNNNNNTGG	1 cut(s)	1504
BstYI	RGATCY	4 cut(s)	311, 935, 1478, 1830
BstZI	CGGCCG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	6 cut(s)	105, 249, 282, 688, 1159, 1405
BtgI	CCRYGG	4 cut(s)	106, 283, 316, 1875
BtrI	CACGTC	2 cut(s)	634, 1757
BtsCI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BtsIMutI	CAGTG	1 cut(s)	1497
BveI	ACCTGC	1 cut(s)	1835
Cac8I	GCNNGC	5 cut(s)	34, 47, 78, 377, 1407
CaiI	CAGNNNCTG	2 cut(s)	77, 1775
CfoI	GCGC	5 cut(s)	51, 76, 91, 142, 296
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	68, 176, 247, 812
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	4, 127, 773, 906
CspAI	ACCGGT	1 cut(s)	178
CviQI	GTAC	4 cut(s)	4, 127, 773, 906
DraI	TTTAAA	1 cut(s)	1468
EaeI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	952
EarI	CTCTTC	1 cut(s)	952
Ecl136II	GAGCTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	3 cut(s)	1160, 1875, 1991
Eco24I	GRGCYC	3 cut(s)	137, 190, 500
Eco31I	GGTCTC	1 cut(s)	1981
Eco47I	GGWCC	3 cut(s)	68, 176, 812
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	1585
Eco88I	CYCGRG	1 cut(s)	840
Eco91I	GGTNACC	2 cut(s)	419, 1649
EcoICRI	GAGCTC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	1180
EcoO65I	GGTNACC	2 cut(s)	419, 1649
EcoRI	GAATTC	1 cut(s)	1335
EcoRII	CCWGG	5 cut(s)	423, 545, 616, 985, 1434
EcoT14I	CCWWGG	3 cut(s)	1160, 1875, 1991
EcoT38I	GRGCYC	3 cut(s)	137, 190, 500
ErhI	CCWWGG	3 cut(s)	1160, 1875, 1991
Esp3I	CGTCTC	2 cut(s)	246, 1346
FaqI	GGGAC	3 cut(s)	563, 1570, 1767
FauI	CCCGC	3 cut(s)	223, 266, 368
FbaI	TGATCA	1 cut(s)	1824
FblI	GTMKAC	1 cut(s)	394
FokI	GGATG	8 cut(s)	440, 617, 696, 1067, 1081, 1405, 1409, 1413
FriOI	GRGCYC	3 cut(s)	137, 190, 500
FspBI	CTAG	5 cut(s)	297, 1046, 1737, 1815, 1923
GlaI	GCGC	5 cut(s)	50, 75, 90, 141, 295
GsuI	CTGGAG	1 cut(s)	1923
HaeII	RGCGCY	5 cut(s)	52, 77, 92, 143, 297
HaeIII	GGCC	6 cut(s)	105, 249, 282, 688, 1159, 1405
HapII	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1664, 1862
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	5 cut(s)	51, 76, 91, 142, 296
Hin6I	GCGC	5 cut(s)	49, 74, 89, 140, 294
HinP1I	GCGC	5 cut(s)	49, 74, 89, 140, 294
HincII	GTYRAC	1 cut(s)	1669
HindII	GTYRAC	1 cut(s)	1669
HinfI	GANTC	5 cut(s)	1172, 1316, 1670, 1796, 1858
HpaII	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1664, 1862
HphI	GGTGA	5 cut(s)	431, 517, 818, 1436, 1726
Hpy166II	GTNNAC	3 cut(s)	395, 887, 1669
Hpy188I	TCNGA	8 cut(s)	28, 520, 594, 1233, 1276, 1341, 1548, 1950
Hpy8I	GTNNAC	3 cut(s)	395, 887, 1669
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	502, 510
HpyCH4III	ACNGT	5 cut(s)	401, 562, 626, 1534, 1969
HpyCH4IV	ACGT	3 cut(s)	596, 633, 1756
HpyCH4V	TGCA	6 cut(s)	608, 821, 912, 1511, 1760, 1837
HpySE526I	ACGT	3 cut(s)	596, 633, 1756
HspAI	GCGC	5 cut(s)	49, 74, 89, 140, 294
Ksp22I	TGATCA	1 cut(s)	1824
Lsp1109I	GCAGC	5 cut(s)	98, 1284, 1495, 1671, 1707
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	5 cut(s)	297, 1046, 1737, 1815, 1923
MaeII	ACGT	3 cut(s)	596, 633, 1756
MaeIII	GTNAC	9 cut(s)	56, 365, 419, 620, 1036, 1196, 1367, 1375, 1649
MbiI	CCGCTC	1 cut(s)	1920
MboII	GAAGA	5 cut(s)	144, 431, 490, 878, 969
MfeI	CAATTG	1 cut(s)	1385
MflI	RGATCY	4 cut(s)	311, 935, 1478, 1830
MhlI	GDGCHC	5 cut(s)	137, 190, 500, 787, 928
MlsI	TGGCCA	3 cut(s)	688, 1159, 1405
MluNI	TGGCCA	3 cut(s)	688, 1159, 1405
MlyI	GAGTC	4 cut(s)	1310, 1664, 1805, 1867
MmeI	TCCRAC	5 cut(s)	51, 697, 987, 1053, 1598
Mox20I	TGGCCA	3 cut(s)	688, 1159, 1405
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	3 cut(s)	688, 1159, 1405
MseI	TTAA	2 cut(s)	1467, 1581
MslI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
Msp20I	TGGCCA	3 cut(s)	688, 1159, 1405
MspI	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1664, 1862
MspR9I	CCNGG	9 cut(s)	192, 227, 425, 547, 618, 739, 987, 1436, 1664
MunI	CAATTG	1 cut(s)	1385
MvaI	CCWGG	5 cut(s)	425, 547, 618, 987, 1436
MvnI	CGCG	2 cut(s)	45, 948
NciI	CCSGG	4 cut(s)	192, 227, 739, 1664
NcoI	CCATGG	1 cut(s)	1875
NlaIV	GGNNCC	5 cut(s)	69, 313, 736, 937, 1331
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
NspI	RCATGY	1 cut(s)	1679
OliI	CACNNNNGTG	2 cut(s)	402, 1502
PaeR7I	CTCGAG	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	1753
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	1172
PflFI	GACNNNGTC	1 cut(s)	1373
PfoI	TCCNGGA	2 cut(s)	190, 737
PinAI	ACCGGT	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	1323
PleI	GAGTC	4 cut(s)	1310, 1664, 1804, 1866
PpsI	GAGTC	4 cut(s)	1310, 1664, 1804, 1866
PsiI	TTATAA	1 cut(s)	1983
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	5 cut(s)	423, 545, 616, 985, 1434
PspEI	GGTNACC	2 cut(s)	419, 1649
PspGI	CCWGG	5 cut(s)	423, 545, 616, 985, 1434
PspN4I	GGNNCC	5 cut(s)	69, 313, 736, 937, 1331
PspPI	GGNCC	4 cut(s)	68, 176, 247, 812
PstI	CTGCAG	1 cut(s)	1839
PstNI	CAGNNNCTG	2 cut(s)	77, 1775
PsuI	RGATCY	4 cut(s)	311, 935, 1478, 1830
PsyI	GACNNNGTC	1 cut(s)	1373
PvuI	CGATCG	1 cut(s)	1323
RsaI	GTAC	4 cut(s)	5, 128, 774, 907
RsaNI	GTAC	4 cut(s)	4, 127, 773, 906
RseI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	1467, 1581
Sau96I	GGNCC	4 cut(s)	68, 176, 247, 812
SbfI	CCTGCAGG	1 cut(s)	1839
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	4 cut(s)	1310, 1664, 1805, 1867
ScrFI	CCNGG	9 cut(s)	192, 227, 425, 547, 618, 739, 987, 1436, 1664
SdaI	CCTGCAGG	1 cut(s)	1839
SduI	GDGCHC	5 cut(s)	137, 190, 500, 787, 928
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	1835
Sfr274I	CTCGAG	1 cut(s)	840
SinI	GGWCC	3 cut(s)	68, 176, 812
SlaI	CTCGAG	1 cut(s)	840
SmiMI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SmlI	CTYRAG	3 cut(s)	678, 801, 840
SmoI	CTYRAG	3 cut(s)	678, 801, 840
Sse8387I	CCTGCAGG	1 cut(s)	1839
SspI	AATATT	1 cut(s)	1634
SspMI	CTAG	5 cut(s)	297, 1046, 1737, 1815, 1923
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	9 cut(s)	190, 225, 423, 545, 616, 737, 985, 1434, 1662
StyI	CCWWGG	3 cut(s)	1160, 1875, 1991
TaaI	ACNGT	5 cut(s)	401, 562, 626, 1534, 1969
TaiI	ACGT	3 cut(s)	599, 636, 1759
TaqI	TCGA	6 cut(s)	346, 793, 841, 1170, 1281, 1319
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	5 cut(s)	83, 86, 291, 294, 1093
TfiI	GAWTC	1 cut(s)	1172
Tru1I	TTAA	2 cut(s)	1467, 1581
Tru9I	TTAA	2 cut(s)	1467, 1581
TscAI	CASTG	1 cut(s)	1504
TseFI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TseI	GCWGC	5 cut(s)	86, 1297, 1508, 1659, 1720
Tsp45I	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TspDTI	ATGAA	4 cut(s)	540, 741, 1409, 1674
TspRI	CASTG	1 cut(s)	1504
Tth111I	GACNNNGTC	1 cut(s)	1373
VpaK11BI	GGWCC	3 cut(s)	68, 176, 812
XagI	CCTNNNNNAGG	1 cut(s)	1180
XapI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1808
XbaI	TCTAGA	1 cut(s)	1922
XceI	RCATGY	1 cut(s)	1679
XhoI	CTCGAG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	5 cut(s)	297, 1046, 1737, 1815, 1923
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.