Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005996

Physical Location & Seq

Genomic Coordinates Forward (+)

11115665 .. 11119976

Gene Structure 4312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGTACGCCTACGACAACCGATACGCCGACGCAGGCTCCTACCGCGAGCGCCGAAGTGACCTAATGGGTCCAGCGCCTGCGGCGGCAGCGCCACCGATCTACGGCCGTGGAGGTGGGGTAGCCCCGTACAGGGGCTCAGCGCCTCCGGTGTCTCCTTATGGAGGAGGAGGGGCTGGACCGGTAGGAGCTCCGGGAGATAGGAATGGATACCCTCCTTTCCAGCCCCCGGCGGGTCGGTTCAGTATGGGCCGAGACGGCGGTGGTAGTTTTGGCGGGAGAGCCCGTGGCGGCGGCGGTAGGGGTTTTGATGGATCCCGTGGGGGTGGTAGAAGCTCCGGTTATAGTCGGGGTGGTGGAGGTTCAGGTTACGGGGGCGGGCGTGGAGGCGGTGGTAGACATGGTGGTGGGTCATCAAGAGGTGACTTGGATGGCATTGTTCTTCCCAAGCAGGATTTTGGGAGCTTAGTTCCTTTTGAGAAGAATTTCTACATTGAGAGCCCTTCGGTGAAGGCAATGTCAGAGCATGAAGTTTTGGCGTATCGAGCCAGGAGGGAGATTACGGTTGATGGGCATGATGTCCCGAAGCCAATTCAGACGTTTCGGGATGCAAGTTTCCCTGGTTACTGTCTTGACGTGATTGCCAAGTTGGGTTTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCAATGGCACTAAAGGGTAGAGATTTAGTTGGAATTGCGGAGACTGGTTCCGGGAAAACCCTTTCATATCTGCTGCCAGCTCTGGTACATATTAGTGCACAGCCTCGATTAGCTCAAGGTGATGGTCCTATTGCGTTAGTATTAGCACCTACTCGAGAATTGGCAGTTCAAATTCAAGAAGAAGCTGTAAAATTTTGTTCACAAAATTATATTAGGAGTACTTGCATTTATGGTGGTGCTCCAAAAGGATCCCAAATACGCGATCTTAGAAGAGGGGTTGAGATTGTGATAGCTACACCTGGCAGACTAATAGATATGTTAGAAGCTCAGCACACAAATTTGCGAAGAGTGACTTACCTAGTTTTGGATGAGGCTGATAGGATGTTGGACATGGGATTTGAGCCGCAGATAAGGAAAATTGTATCTCAAACCCGACCAGATCGGCAGACATTGTATTGGAGTGCCACATGGCCAAGGGAGGTCGAATCCTTAGCAAGGCAGTTTTTACGTAACCCCTATAAGGTAATTATTGGATCAGCAAGTTTGAAAGCAAACCAATCCATAAAGCAAGTTGTTGAAGTTGTGTCTGAGTTTGACAAATATAATAGGCTGCTCAAATTGCTAAAAGACTCGATTGTTGGGAGCCGAATTCTGATATTTGTGGAGACAAAAAAGGGTTGTGACCATGTCACTAAGCAATTGAGGATGGATGGATGGCCAGCTCTGTCCATTCATGGTGATAAAAACCAGGCTGAAAGAGATTGGGTCTTGGCTGAGTTTAAAAGTGGCAGATCTCCTATAATGACTGCCACTGATGTGGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTTGAGGATTATGTCCACAGGATTGGACGAACGGGACGTGCAGGGGCAACAGGAACTGCTTTGACCTTTTTCACAGAGTCAAATGGTAAATTCGCTAGGGAACTGATCAAGATCCTGCAGGAAGCAGGTCAGGTTGTGAGTCCGGCATTGTCTGCCATGGCACGATCATCTGGTTTTAACTCCGGAGGGGGGAACTTCCGCTCTAGAGGACGAGGAGGCTTTGGTAATCGGATTTCTGGTTCAAATACTGTTCCTGTTGGTTATAAGAGACCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

615

Amino Acids

66.08

Weight (kDa)

9.74

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	222 - 392	6.7e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	429 - 538	2.3e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63120 AT5G63120 AT5G63120 AT5G63120 AT5G63120
fragaria_vesca	FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110
malus_domestica	MD06G1166600.v1.1 MD14G1172300.v1.1
prunus_persica	Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1
pyrus_communis	pycom06g14930 pycom14g14390
rosa_chinensis	RchiOBHm_Chr7g0192711
rosa_laevigata	RLG00000004335
rosa_multiflora	Rmu_sc0002040.1_g000012
rosa_roxburghii	Rroxscaffold_3G00262730
rosa_rugosa	Rorug07G0004000 Rorug07G0004100
rosa_samantha	Rh7CG133900 Rh7DG131300
rosa_wichuraiana	Rw7G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1833
Acc36I	ACCTGC	1 cut(s)	1685
AccBSI	CCGCTC	1 cut(s)	1770
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	2 cut(s)	45, 948
AccIII	TCCGGA	1 cut(s)	1751
AclWI	GGATC	6 cut(s)	306, 319, 930, 943, 1228, 1675
AcoI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
AcsI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1658
AfaI	GTAC	4 cut(s)	5, 128, 774, 907
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	659, 857, 863, 1234, 1265, 1812
AjiI	CACGTC	2 cut(s)	634, 1607
AjnI	CCWGG	4 cut(s)	545, 616, 985, 1434
AleI	CACNNNNGTG	1 cut(s)	1502
AloI	GAACNNNNNNTCC	2 cut(s)	1792, 1824
AluBI	AGCT	9 cut(s)	188, 333, 462, 767, 800, 872, 980, 1013, 1409
AluI	AGCT	9 cut(s)	188, 333, 462, 767, 800, 872, 980, 1013, 1409
Alw21I	GWGCWC	3 cut(s)	190, 787, 928
Alw26I	GTCTC	5 cut(s)	156, 246, 722, 1346, 1831
Alw44I	GTGCAC	1 cut(s)	783
AlwI	GGATC	6 cut(s)	306, 319, 930, 943, 1228, 1675
AlwNI	CAGNNNCTG	2 cut(s)	77, 1625
Ama87I	CYCGRG	1 cut(s)	840
Aor13HI	TCCGGA	1 cut(s)	1751
AoxI	GGCC	5 cut(s)	103, 247, 686, 1157, 1403
ApaLI	GTGCAC	1 cut(s)	783
ApeKI	GCWGC	4 cut(s)	86, 760, 1297, 1508
ApoI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1658
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
AsiGI	ACCGGT	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	4 cut(s)	51, 76, 91, 142
AspS9I	GGNCC	4 cut(s)	68, 176, 247, 812
AsuC2I	CCSGG	3 cut(s)	192, 227, 739
AsuHPI	GGTGA	4 cut(s)	431, 517, 818, 1436
AvaI	CYCGRG	1 cut(s)	840
AvaII	GGWCC	3 cut(s)	68, 176, 812
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	3 cut(s)	688, 1159, 1405
BamHI	GGATCC	2 cut(s)	311, 935
BanII	GRGCYC	4 cut(s)	137, 190, 283, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
Bbv12I	GWGCWC	3 cut(s)	190, 787, 928
BbvI	GCAGC	4 cut(s)	98, 747, 1284, 1495
BccI	CCATC	9 cut(s)	302, 422, 560, 678, 803, 1387, 1391, 1395, 1570
BceAI	ACGGC	3 cut(s)	90, 118, 271
BciT130I	CCWGG	4 cut(s)	547, 618, 987, 1436
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	2 cut(s)	1545, 1674
BcnI	CCSGG	3 cut(s)	192, 227, 739
BcoDI	GTCTC	5 cut(s)	156, 246, 722, 1346, 1831
BfaI	CTAG	3 cut(s)	1046, 1665, 1773
BfmI	CTRYAG	1 cut(s)	1685
BfoI	RGCGCY	4 cut(s)	52, 77, 92, 143
BfuAI	ACCTGC	1 cut(s)	1685
BfuI	GTATCC	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	1478
BisI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
BlpI	GCTNAGC	2 cut(s)	136, 1014
BlsI	GCNGC	9 cut(s)	82, 85, 88, 290, 293, 762, 1092, 1299, 1510
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	7 cut(s)	192, 227, 547, 618, 739, 987, 1436
Bme18I	GGWCC	3 cut(s)	68, 176, 812
BmeT110I	CYCGRG	1 cut(s)	840
BmgBI	CACGTC	2 cut(s)	634, 1607
BmgT120I	GGNCC	4 cut(s)	68, 176, 247, 812
BmiI	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
BmrFI	CCNGG	7 cut(s)	192, 227, 547, 618, 739, 987, 1436
BmsI	GCATC	1 cut(s)	595
Bpu10I	CCTNAGC	1 cut(s)	1177
Bpu1102I	GCTNAGC	2 cut(s)	136, 1014
BpuEI	CTTGAG	3 cut(s)	663, 786, 1592
BpuMI	CCSGG	3 cut(s)	192, 227, 739
BsaAI	YACGTR	1 cut(s)	1196
BsaBI	GATNNNNATC	1 cut(s)	1679
BsaI	GGTCTC	1 cut(s)	1831
BsaJI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1725, 1841
BsaWI	WCCGGW	4 cut(s)	145, 178, 335, 1751
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 102, 132, 268, 298
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	1679
BseAI	TCCGGA	1 cut(s)	1751
BseBI	CCWGG	4 cut(s)	547, 618, 987, 1436
BseDI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1725, 1841
BseGI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BseJI	GATNNNNATC	1 cut(s)	1679
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	4 cut(s)	150, 1028, 1266, 1452
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	3 cut(s)	177, 180, 1797
BseSI	GKGCMC	1 cut(s)	787
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	98, 747, 1284, 1495
BsgI	GTGCAG	2 cut(s)	1494, 1629
Bsh1236I	CGCG	2 cut(s)	45, 948
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	105, 249, 688, 1159, 1405
BshTI	ACCGGT	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	190, 787, 928
BsiHKCI	CYCGRG	1 cut(s)	840
BsiSI	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1712, 1752
BslFI	GGGAC	2 cut(s)	563, 1617
BsmAI	GTCTC	5 cut(s)	156, 246, 722, 1346, 1831
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	563, 1617
BsnI	GGCC	5 cut(s)	105, 249, 688, 1159, 1405
Bso31I	GGTCTC	1 cut(s)	1831
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	6 cut(s)	137, 190, 283, 500, 787, 928
Bsp13I	TCCGGA	1 cut(s)	1751
Bsp1720I	GCTNAGC	2 cut(s)	136, 1014
Bsp19I	CCATGG	1 cut(s)	1725
BspANI	GGCC	5 cut(s)	105, 249, 688, 1159, 1405
BspCNI	CTCAG	4 cut(s)	149, 1027, 1267, 1453
BspEI	TCCGGA	1 cut(s)	1751
BspFNI	CGCG	2 cut(s)	45, 948
BspLI	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
BspMAI	CTGCAG	1 cut(s)	1689
BspMI	ACCTGC	1 cut(s)	1685
BspPI	GGATC	6 cut(s)	306, 319, 930, 943, 1228, 1675
BspTNI	GGTCTC	1 cut(s)	1831
BsrBI	CCGCTC	1 cut(s)	1770
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	8 cut(s)	106, 225, 283, 316, 616, 1160, 1725, 1841
BssT1I	CCWWGG	3 cut(s)	1160, 1725, 1841
Bst2UI	CCWGG	4 cut(s)	547, 618, 987, 1436
Bst4CI	ACNGT	3 cut(s)	562, 626, 1819
Bst6I	CTCTTC	2 cut(s)	952, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1721
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	6 cut(s)	34, 47, 78, 377, 765, 1407
BstDEI	CTNAG	8 cut(s)	136, 463, 953, 1014, 1177, 1275, 1380, 1461
BstDSI	CCRYGG	4 cut(s)	106, 283, 316, 1725
BstENI	CCTNNNNNAGG	2 cut(s)	159, 1180
BstF5I	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BstFNI	CGCG	2 cut(s)	45, 948
BstH2I	RGCGCY	4 cut(s)	52, 77, 92, 143
BstHHI	GCGC	4 cut(s)	51, 76, 91, 142
BstMAI	GTCTC	5 cut(s)	156, 246, 722, 1346, 1831
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 80, 86, 255, 542, 1306, 1721
BstNI	CCWGG	4 cut(s)	547, 618, 987, 1436
BstSCI	CCNGG	7 cut(s)	190, 225, 545, 616, 737, 985, 1434
BstSFI	CTRYAG	1 cut(s)	1685
BstSLI	GKGCMC	1 cut(s)	787
BstSNI	TACGTA	1 cut(s)	1196
BstUI	CGCG	2 cut(s)	45, 948
BstV1I	GCAGC	4 cut(s)	98, 747, 1284, 1495
BstX2I	RGATCY	4 cut(s)	311, 935, 1478, 1680
BstXI	CCANNNNNNTGG	2 cut(s)	1504, 1592
BstYI	RGATCY	4 cut(s)	311, 935, 1478, 1680
BstZI	CGGCCG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	5 cut(s)	105, 249, 688, 1159, 1405
BtgI	CCRYGG	4 cut(s)	106, 283, 316, 1725
BtrI	CACGTC	2 cut(s)	634, 1607
BtsCI	GGATG	8 cut(s)	433, 610, 689, 1060, 1074, 1398, 1402, 1406
BtsIMutI	CAGTG	1 cut(s)	1497
BveI	ACCTGC	1 cut(s)	1685
Cac8I	GCNNGC	6 cut(s)	34, 47, 78, 377, 765, 1407
CaiI	CAGNNNCTG	2 cut(s)	77, 1625
CfoI	GCGC	4 cut(s)	51, 76, 91, 142
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	68, 176, 247, 812
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	4, 127, 773, 906
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	8 cut(s)	398, 524, 572, 1078, 1155, 1373, 1421, 1726
CviQI	GTAC	4 cut(s)	4, 127, 773, 906
DdeI	CTNAG	8 cut(s)	136, 463, 953, 1014, 1177, 1275, 1380, 1461
DraI	TTTAAA	1 cut(s)	1468
EaeI	YGGCCR	4 cut(s)	103, 686, 1157, 1403
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	952, 1027
EarI	CTCTTC	2 cut(s)	952, 1027
Ecl136II	GAGCTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	103
Eco105I	TACGTA	1 cut(s)	1196
Eco130I	CCWWGG	3 cut(s)	1160, 1725, 1841
Eco24I	GRGCYC	4 cut(s)	137, 190, 283, 500
Eco31I	GGTCTC	1 cut(s)	1831
Eco47I	GGWCC	3 cut(s)	68, 176, 812
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	2 cut(s)	159, 1180
EcoRI	GAATTC	1 cut(s)	1335
EcoRII	CCWGG	4 cut(s)	545, 616, 985, 1434
EcoT14I	CCWWGG	3 cut(s)	1160, 1725, 1841
EcoT38I	GRGCYC	4 cut(s)	137, 190, 283, 500
ErhI	CCWWGG	3 cut(s)	1160, 1725, 1841
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	8 cut(s)	401, 527, 575, 1081, 1158, 1376, 1424, 1729
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FaqI	GGGAC	2 cut(s)	563, 1617
FatI	CATG	8 cut(s)	397, 523, 571, 1077, 1154, 1372, 1420, 1725
FauI	CCCGC	3 cut(s)	223, 266, 368
FbaI	TGATCA	2 cut(s)	1545, 1674
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
FokI	GGATG	8 cut(s)	440, 617, 696, 1067, 1081, 1405, 1409, 1413
FriOI	GRGCYC	4 cut(s)	137, 190, 283, 500
Fsp4HI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
FspBI	CTAG	3 cut(s)	1046, 1665, 1773
GlaI	GCGC	4 cut(s)	50, 75, 90, 141
GluI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
HaeII	RGCGCY	4 cut(s)	52, 77, 92, 143
HaeIII	GGCC	5 cut(s)	105, 249, 688, 1159, 1405
HapII	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1712, 1752
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	4 cut(s)	51, 76, 91, 142
Hin1II	CATG	8 cut(s)	401, 527, 575, 1081, 1158, 1376, 1424, 1729
Hin6I	GCGC	4 cut(s)	49, 74, 89, 140
HinP1I	GCGC	4 cut(s)	49, 74, 89, 140
HinfI	GANTC	4 cut(s)	1172, 1316, 1646, 1708
HpaII	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1712, 1752
HphI	GGTGA	4 cut(s)	431, 517, 818, 1436
Hpy166II	GTNNAC	4 cut(s)	395, 785, 887, 1585
Hpy188I	TCNGA	5 cut(s)	520, 594, 1276, 1341, 1800
Hpy8I	GTNNAC	4 cut(s)	395, 785, 887, 1585
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	502, 510, 1522
HpyCH4III	ACNGT	3 cut(s)	562, 626, 1819
HpyCH4IV	ACGT	4 cut(s)	596, 633, 1195, 1606
HpyCH4V	TGCA	6 cut(s)	608, 785, 912, 1511, 1610, 1687
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 80, 86, 255, 542, 1306, 1721
HpyF3I	CTNAG	8 cut(s)	136, 463, 953, 1014, 1177, 1275, 1380, 1461
HpySE526I	ACGT	4 cut(s)	596, 633, 1195, 1606
Hsp92II	CATG	8 cut(s)	401, 527, 575, 1081, 1158, 1376, 1424, 1729
HspAI	GCGC	4 cut(s)	49, 74, 89, 140
Kpn2I	TCCGGA	1 cut(s)	1751
Ksp22I	TGATCA	2 cut(s)	1545, 1674
LmnI	GCTCC	7 cut(s)	41, 185, 193, 338, 459, 931, 1329
Lsp1109I	GCAGC	4 cut(s)	98, 747, 1284, 1495
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	1046, 1665, 1773
MaeII	ACGT	4 cut(s)	596, 633, 1195, 1606
MaeIII	GTNAC	8 cut(s)	56, 365, 419, 620, 1036, 1196, 1367, 1375
MbiI	CCGCTC	1 cut(s)	1770
MboII	GAAGA	5 cut(s)	431, 490, 878, 969, 1044
MfeI	CAATTG	1 cut(s)	1385
MflI	RGATCY	4 cut(s)	311, 935, 1478, 1680
MhlI	GDGCHC	6 cut(s)	137, 190, 283, 500, 787, 928
MlsI	TGGCCA	3 cut(s)	688, 1159, 1405
MluNI	TGGCCA	3 cut(s)	688, 1159, 1405
MlyI	GAGTC	3 cut(s)	1310, 1655, 1717
MmeI	TCCRAC	2 cut(s)	697, 1053
Mox20I	TGGCCA	3 cut(s)	688, 1159, 1405
MroI	TCCGGA	1 cut(s)	1751
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	3 cut(s)	688, 1159, 1405
MseI	TTAA	2 cut(s)	1467, 1746
MslI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
Msp20I	TGGCCA	3 cut(s)	688, 1159, 1405
MspI	CCGG	8 cut(s)	146, 179, 191, 227, 336, 738, 1712, 1752
MspR9I	CCNGG	7 cut(s)	192, 227, 547, 618, 739, 987, 1436
MunI	CAATTG	1 cut(s)	1385
MvaI	CCWGG	4 cut(s)	547, 618, 987, 1436
MvnI	CGCG	2 cut(s)	45, 948
MwoI	GCNNNNNNNGC	7 cut(s)	42, 80, 86, 255, 542, 1306, 1721
NciI	CCSGG	3 cut(s)	192, 227, 739
NcoI	CCATGG	1 cut(s)	1725
NlaIII	CATG	8 cut(s)	401, 527, 575, 1081, 1158, 1376, 1424, 1729
NlaIV	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
OliI	CACNNNNGTG	1 cut(s)	1502
PaeR7I	CTCGAG	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	1603
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	1172
PflFI	GACNNNGTC	1 cut(s)	1373
PfoI	TCCNGGA	2 cut(s)	190, 737
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	9 cut(s)	82, 85, 88, 290, 293, 762, 1092, 1299, 1510
PleI	GAGTC	3 cut(s)	1310, 1654, 1716
PpsI	GAGTC	3 cut(s)	1310, 1654, 1716
Ppu21I	YACGTR	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	1833
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	4 cut(s)	545, 616, 985, 1434
PspGI	CCWGG	4 cut(s)	545, 616, 985, 1434
PspN4I	GGNNCC	6 cut(s)	37, 69, 313, 736, 937, 1331
PspPI	GGNCC	4 cut(s)	68, 176, 247, 812
PstI	CTGCAG	1 cut(s)	1689
PstNI	CAGNNNCTG	2 cut(s)	77, 1625
PsuI	RGATCY	4 cut(s)	311, 935, 1478, 1680
PsyI	GACNNNGTC	1 cut(s)	1373
RsaI	GTAC	4 cut(s)	5, 128, 774, 907
RsaNI	GTAC	4 cut(s)	4, 127, 773, 906
RseI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	1467, 1746
SatI	GCNGC	9 cut(s)	81, 84, 87, 289, 292, 761, 1091, 1298, 1509
Sau96I	GGNCC	4 cut(s)	68, 176, 247, 812
SbfI	CCTGCAGG	1 cut(s)	1689
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	3 cut(s)	1310, 1655, 1717
ScrFI	CCNGG	7 cut(s)	192, 227, 547, 618, 739, 987, 1436
SdaI	CCTGCAGG	1 cut(s)	1689
SduI	GDGCHC	6 cut(s)	137, 190, 283, 500, 787, 928
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	1685
Sfr274I	CTCGAG	1 cut(s)	840
SinI	GGWCC	3 cut(s)	68, 176, 812
SlaI	CTCGAG	1 cut(s)	840
SmiMI	CAYNNNNRTG	3 cut(s)	402, 780, 1502
SmlI	CTYRAG	4 cut(s)	678, 801, 840, 1571
SmoI	CTYRAG	4 cut(s)	678, 801, 840, 1571
SnaBI	TACGTA	1 cut(s)	1196
Sse8387I	CCTGCAGG	1 cut(s)	1689
SspMI	CTAG	3 cut(s)	1046, 1665, 1773
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	7 cut(s)	190, 225, 545, 616, 737, 985, 1434
StyI	CCWWGG	3 cut(s)	1160, 1725, 1841
TaaI	ACNGT	3 cut(s)	562, 626, 1819
TaiI	ACGT	4 cut(s)	599, 636, 1198, 1609
TaqI	TCGA	5 cut(s)	541, 793, 841, 1170, 1319
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	5 cut(s)	83, 86, 291, 294, 1093
TfiI	GAWTC	1 cut(s)	1172
Tru1I	TTAA	2 cut(s)	1467, 1746
Tru9I	TTAA	2 cut(s)	1467, 1746
TscAI	CASTG	1 cut(s)	1504
TseFI	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TseI	GCWGC	4 cut(s)	86, 760, 1297, 1508
Tsp45I	GTSAC	5 cut(s)	56, 419, 1036, 1367, 1375
TspDTI	ATGAA	3 cut(s)	540, 741, 1409
TspRI	CASTG	1 cut(s)	1504
Tth111I	GACNNNGTC	1 cut(s)	1373
VneI	GTGCAC	1 cut(s)	783
VpaK11BI	GGWCC	3 cut(s)	68, 176, 812
XagI	CCTNNNNNAGG	2 cut(s)	159, 1180
XapI	RAATTY	6 cut(s)	481, 858, 878, 1024, 1335, 1658
XbaI	TCTAGA	1 cut(s)	1772
XhoI	CTCGAG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	3 cut(s)	1046, 1665, 1773
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.