Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005996

Physical Location & Seq

Genomic Coordinates Reverse (-)

349091 .. 356870

Gene Structure 7780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGGGGGCGAGCCGGAAGCTCCAGGGCGAGATCGATCGTGTTCTCAAGAAGGTCCAGGAAGGCGTAGATGTGTTCGACAGCATTTGGAATAAGGTTTACGACACAGACAATGCGAACCAGAAGGAGAAGTTTGAGGCCGACTTGAAGAAGGAGATTAAGAAGCTCCAGCGGTACAGGGACCAAATCAAGACTTGGATTCAGTCCAGTGAAATCAAGGATAAGAAGGTGAGTGCCTCATACGAGCAGGCTCTGGTGGATGCTCGGAAGCTTATTGAGCGTGAAATGGAAAGGTTTAAGATATGCGAAAAGGAGACCAAAACCAAAGCTTTTTCTAAAGAGGGATTGGGCCAACAACCAAAAACTGATCCGAAGGAGAAGGCTAAATCAGAGACAAGGGATTGGATAAACACTGTGGTAGGGGAGTTGGAATCTCAGATTGACAGCTTTGAAGCTGAGATTGAGGGGGTATCAGTCAAGAAAGGAAAGGGCAGACCGCCTAGACTGACCCATCTAGAGACATCTATTACCCGGCATAAGGCTCATATAATGAAGTTGGAACTGATCTTAAGGTTATTGGATAATGATGAACTCAGTCCTGAGCAGGTCAATGATGTCAAAGACTTTTTGGAAGACTATGTTGAACGTAATCAGGAGGACTTTGATGAGTTTAGTGAAGTTGATGAGCTTTACAGCACCTTACCACTAGACAAGGTGGAGTCCCTTGAAGATATTGTTCCTCCTGGTCTTGTCAAGGGTGCACCGATGCTTGGCTTGAAGACTTCTTTGGCAGCATCAGCATCTCAAATGCCTCCCATTGTTATTACCACCAACCAACCAAGTACTCCTGTACTAGAGCCGGTTGAGGATACAGTTTCCCAGGATAACAGTAATCCTGATAACGTTGCTAGAACTCCACCTCCTAAAAGCAGTGCACTTGGTTCTGCTGCATCAACACCAACTGGGAATCAGGCAACTCCTGTCTCTTTGAATGTTTCATCTCTCAGTTTGCCTGGTGTACCAACTGTTTCAGCTGTTGCTGGTTCAAATGCTGTTCGTGGTGTCACAGAGAATGCAGGGGCTGCTCTTTCTTCATCTCCTGTAAGTCTGTCTCCTTCTGTGAAGGAAGAAGAAGTTGCAAGCTTCCCTGGACGTAGACCATCACCATCGCTTTCTGATACTGGAGTTGTGAGAGGCATTGGTAGAGGTGGCCTCACTGGCCAGATCCCATCTAGCATACCTCTTAGTTCTAGCACTGTGGTTCCTAGTAATAATGCCCTGGGTGCAGTCCCCTCTGCTACTGATGTAGCAAAGAGAAATATTTTGGGAGCTGATGAGAGACTTGGAAGTAGTGGTGTGGTACAGTCTCTTGTTTCCCCTCTGAGTAACCGGATGATCTTGCCTCAGGCTTCCAAACCCAGTGATGGAACTGGGCCAGTTGATTCTAGTAATACAAGTTCTATGGTCTCTGGCATGCAATGGAGGCCTGGAAGTTCCTTCCCAAACCAGAATGAAGCGGGATTGTTTCGTGGAAGAACGGAAATAGCACCTGATCAGAGGGAGAAGTTCTTGCAGCGGCTCCAGCAAGTGCAGCAACAAGGTCACAGTACCATTCTTAGCATGCCCACTCTTGCTGGTGGAAATTCTAAGCAGTTTTCTACTCAGCAGCAGAATCCACTCTTGCAACAGTTTAATTCTCAAAGCTCATCTGTACCTTCTCAAGCTGGCATGGGACTTGGGGTACAGGCACCAGGTCTTGGGACTGTTTCATCTACTACCTTACAGCAGCAGCTAAATTCCATCCATCAACAGTCTCCACAGGCTAATCCACAGGCATTGATGTCAAGTGGACCAAAAGAAGCTGATGCTGGTCATCCAAAAGTTGAGGACCAGCAGCAACAGAATCTTCCTGATGACTCGACATCTGAATCTGCTCCTAGTTCTGGGCTCGTAAAGAATCTAATGAATGAGGATGATATGAAAGCCTCATATGCAATTGATTCTCTGACTGGAGTTTCTAGCTCTTTGACAGAGTCTTCTCAAGTACCACGAGATATCGATCTCTCTCCTGGGCAACCTTTGCAGTCGAGTCAACCTTCTGCTAGCCTTGGTGTTATTGGCCGAAGAAGTGTTTCTGATCTTGGTGCAATTGGCGATAACCTCTCCGGATCAACTGCTAATTCTGGGGCAATGCATGATCAGTTGTATAATTTGCAGATGCTTGAGGCTGCTTATTACAAACTTCCACAACCCAAAGACTCCGAACGTGCAAGAAGCTACACTCCAAGGCACCCTGCAATAACTCCTCCTAGCTATCCCCAAGTTCAAGCACCTATAGTTAATAATCCTGCTTTCTGGGAACGTTTGGGTTCTGAACAGTATTCTACTGATACCCTGTTCTTTGCATTTTACTATCAGCAGAACACTTACCAGCAATATTTGGCTGCCAAAGAGTTGAAGAAGCAATCTTGGAGATACCACAGGAAATACAACACTTGGTTTCAACGACACGAAGAGCCAAAAGTTGCTACTGATGAATATGAACAGGGTACATATGTGTACTTTGACTTCCATATTGCCAATGATGATCTACAACATGGATGGTGTCAAAGGATCAAAACCGAGTTTACCTTTGAATATAACTATCTTGAAGATGAACTTATCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

888

Amino Acids

97.19

Weight (kDa)

5.26

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Not3	PF04065	4 - 235	2.3e-83	Not1 N-terminal domain, CCR4-Not complex component
NOT2_3_5_C	PF04153	744 - 882	9.6e-34	NOT2/NOT3/NOT5 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63120 AT5G63120 AT5G63120 AT5G63120 AT5G63120
fragaria_vesca	FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110 FvH4_5g06110
malus_domestica	MD06G1166600.v1.1 MD14G1172300.v1.1
prunus_persica	Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1 Prupe.5G166600_v2.0.a1
pyrus_communis	pycom06g14930 pycom14g14390
rosa_chinensis	RchiOBHm_Chr7g0192711
rosa_laevigata	RLG00000004335
rosa_multiflora	Rmu_sc0002040.1_g000012
rosa_roxburghii	Rroxscaffold_3G00262730
rosa_rugosa	Rorug07G0004000 Rorug07G0004100
rosa_samantha	Rh7CG133900 Rh7DG131300
rosa_wichuraiana	Rw7G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccB1I	GGYRCC	2 cut(s)	1744, 2286
AccB7I	CCANNNNNTGG	1 cut(s)	1754
AccI	GTMKAC	1 cut(s)	1153
AccIII	TCCGGA	1 cut(s)	2162
AciI	CCGC	4 cut(s)	169, 494, 1514, 1573
AclI	AACGTT	2 cut(s)	900, 2359
AclWI	GGATC	4 cut(s)	359, 1216, 2173, 2618
AcoI	YGGCCR	2 cut(s)	1216, 2116
AcsI	RAATTY	2 cut(s)	1639, 1792
AfiI	CCNNNNNNNGG	5 cut(s)	535, 767, 1421, 1754, 1940
AflII	CTTAAG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AloI	GAACNNNNNNTCC	2 cut(s)	901, 933
Alw21I	GWGCWC	2 cut(s)	760, 934
Alw26I	GTCTC	9 cut(s)	305, 383, 509, 985, 1113, 1330, 1368, 1468, 1815
Alw44I	GTGCAC	2 cut(s)	756, 930
AlwI	GGATC	4 cut(s)	359, 1216, 2173, 2618
AlwNI	CAGNNNCTG	2 cut(s)	250, 1079
Aor13HI	TCCGGA	1 cut(s)	2162
AoxI	GGCC	7 cut(s)	135, 346, 1207, 1216, 1430, 1481, 2116
ApaLI	GTGCAC	2 cut(s)	756, 930
ApoI	RAATTY	2 cut(s)	1639, 1792
Asp700I	GAANNNNTTC	1 cut(s)	2128
AspS9I	GGNCC	6 cut(s)	52, 178, 346, 1430, 1847, 1885
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	238, 1152
AsuNHI	GCTAGC	1 cut(s)	2099
AvaII	GGWCC	4 cut(s)	52, 178, 1847, 1885
AxyI	CCTNAGG	1 cut(s)	1401
BaeGI	GKGCMC	2 cut(s)	760, 934
BaeI	ACNNNNGTAYC	4 cut(s)	1167, 1200, 2538, 2571
BalI	TGGCCA	1 cut(s)	1218
BanI	GGYRCC	2 cut(s)	1744, 2286
BanII	GRGCYC	1 cut(s)	1947
BarI	GAAGNNNNNNTAC	2 cut(s)	2549, 2581
BauI	CACGAG	1 cut(s)	2046
BbsI	GAAGAC	3 cut(s)	636, 782, 2025
Bbv12I	GWGCWC	2 cut(s)	760, 934
BccI	CCATC	8 cut(s)	516, 1165, 1171, 1234, 1415, 1805, 1809, 2592
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	2 cut(s)	1549, 2194
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	9 cut(s)	305, 383, 509, 985, 1113, 1330, 1368, 1468, 1815
BfmI	CTRYAG	1 cut(s)	2331
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	859
BglI	GCCNNNNNGGC	1 cut(s)	1215
BmcAI	AGTACT	1 cut(s)	841
Bme18I	GGWCC	4 cut(s)	52, 178, 1847, 1885
BmgT120I	GGNCC	6 cut(s)	52, 178, 346, 1430, 1847, 1885
BmiI	GGNNCC	5 cut(s)	179, 1260, 1577, 1746, 2288
BmrI	ACTGGG	3 cut(s)	969, 1410, 1437
BmsI	GCATC	7 cut(s)	247, 753, 800, 806, 956, 1852, 2205
BmtI	GCTAGC	1 cut(s)	2103
BmuI	ACTGGG	3 cut(s)	969, 1410, 1437
BpiI	GAAGAC	3 cut(s)	636, 782, 2025
BplI	GAGNNNNNCTC	2 cut(s)	1194, 1226
BpmI	CTGGAG	5 cut(s)	5, 149, 1200, 1562, 2028
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	4 cut(s)	29, 1701, 2022, 2240
BpuMI	CCSGG	1 cut(s)	529
Bsa29I	ATCGAT	2 cut(s)	33, 2055
BsaBI	GATNNNNATC	1 cut(s)	2055
BsaI	GGTCTC	2 cut(s)	305, 1468
BsaJI	CCNNGG	8 cut(s)	22, 876, 1144, 1275, 1276, 2066, 2104, 2282
BsaWI	WCCGGW	2 cut(s)	1386, 2162
BsaXI	ACNNNNNCTCC	2 cut(s)	901, 931
Bsc4I	CCNNNNNNNGG	5 cut(s)	535, 767, 1421, 1754, 1940
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	8 cut(s)	204, 964, 1183, 1219, 1416, 1432, 1433, 2011
Bse21I	CCTNAGG	1 cut(s)	1401
Bse3DI	GCAATG	2 cut(s)	1481, 2193
Bse8I	GATNNNNATC	1 cut(s)	2055
BseAI	TCCGGA	1 cut(s)	2162
BseCI	ATCGAT	2 cut(s)	33, 2055
BseDI	CCNNGG	8 cut(s)	22, 876, 1144, 1275, 1276, 2066, 2104, 2282
BseGI	GGATG	6 cut(s)	262, 1395, 1797, 1870, 1975, 2603
BseJI	GATNNNNATC	1 cut(s)	2055
BseLI	CCNNNNNNNGG	5 cut(s)	535, 767, 1421, 1754, 1940
BseMI	GCAATG	2 cut(s)	1481, 2193
BseMII	CTCAG	8 cut(s)	444, 446, 588, 604, 1015, 1370, 1415, 1673
BseNI	ACTGG	8 cut(s)	204, 964, 1183, 1219, 1416, 1432, 1433, 2011
BseRI	GAGGAG	1 cut(s)	2292
BseSI	GKGCMC	2 cut(s)	760, 934
BsgI	GTGCAG	2 cut(s)	1302, 1607
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	7 cut(s)	137, 348, 1209, 1218, 1432, 1483, 2118
BshNI	GGYRCC	2 cut(s)	1744, 2286
BshVI	ATCGAT	2 cut(s)	33, 2055
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	760, 934
BsiSI	CCGG	5 cut(s)	13, 529, 857, 1387, 2163
BslFI	GGGAC	5 cut(s)	191, 703, 1271, 1743, 1771
BslI	CCNNNNNNNGG	5 cut(s)	535, 767, 1421, 1754, 1940
BsmAI	GTCTC	9 cut(s)	305, 383, 509, 985, 1113, 1330, 1368, 1468, 1815
BsmFI	GGGAC	5 cut(s)	191, 703, 1271, 1743, 1771
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	7 cut(s)	137, 348, 1209, 1218, 1432, 1483, 2118
Bso31I	GGTCTC	2 cut(s)	305, 1468
Bsp1286I	GDGCHC	3 cut(s)	760, 934, 1947
Bsp13I	TCCGGA	1 cut(s)	2162
BspACI	CCGC	4 cut(s)	169, 494, 1514, 1573
BspANI	GGCC	7 cut(s)	137, 348, 1209, 1218, 1432, 1483, 2118
BspCNI	CTCAG	8 cut(s)	445, 445, 589, 603, 1014, 1371, 1414, 1672
BspDI	ATCGAT	2 cut(s)	33, 2055
BspEI	TCCGGA	1 cut(s)	2162
BspLI	GGNNCC	5 cut(s)	179, 1260, 1577, 1746, 2288
BspMI	ACCTGC	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	2103
BspPI	GGATC	4 cut(s)	359, 1216, 2173, 2618
BspQI	GCTCTTC	1 cut(s)	2505
BspT107I	GGYRCC	2 cut(s)	1744, 2286
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	2 cut(s)	305, 1468
BsrDI	GCAATG	2 cut(s)	1481, 2193
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	8 cut(s)	204, 964, 1183, 1219, 1416, 1432, 1433, 2011
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	8 cut(s)	22, 876, 1144, 1275, 1276, 2066, 2104, 2282
BssSI	CACGAG	1 cut(s)	2046
BssT1I	CCWWGG	2 cut(s)	2104, 2282
Bst2BI	CACGAG	1 cut(s)	2046
Bst6I	CTCTTC	1 cut(s)	2505
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	2 cut(s)	1079, 2077
BstC8I	GCNNGC	7 cut(s)	10, 246, 1138, 1472, 1619, 1723, 2101
BstF5I	GGATG	6 cut(s)	262, 1395, 1797, 1870, 1975, 2603
BstMAI	GTCTC	9 cut(s)	305, 383, 509, 985, 1113, 1330, 1368, 1468, 1815
BstMCI	CGRYCG	1 cut(s)	37
BstNSI	RCATGY	2 cut(s)	1474, 1621
BstSFI	CTRYAG	1 cut(s)	2331
BstSLI	GKGCMC	2 cut(s)	760, 934
BstV2I	GAAGAC	3 cut(s)	636, 782, 2025
BstX2I	RGATCY	1 cut(s)	1221
BstYI	RGATCY	1 cut(s)	1221
Bsu15I	ATCGAT	2 cut(s)	33, 2055
Bsu36I	CCTNAGG	1 cut(s)	1401
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	7 cut(s)	137, 348, 1209, 1218, 1432, 1483, 2118
BsuTUI	ATCGAT	2 cut(s)	33, 2055
BtgZI	GCGATG	1 cut(s)	1149
BtsCI	GGATG	6 cut(s)	262, 1395, 1797, 1870, 1975, 2603
BtsI	GCAGTG	1 cut(s)	934
BtsIMutI	CAGTG	6 cut(s)	211, 408, 934, 1212, 1251, 1423
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	7 cut(s)	10, 246, 1138, 1472, 1619, 1723, 2101
CaiI	CAGNNNCTG	2 cut(s)	250, 1079
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	6 cut(s)	52, 178, 346, 1430, 1847, 1885
ClaI	ATCGAT	2 cut(s)	33, 2055
CsiI	ACCWGGT	1 cut(s)	1747
CspCI	CAANNNNNGTGG	2 cut(s)	1815, 1850
CviAII	CATG	5 cut(s)	1471, 1618, 1726, 2192, 2594
EaeI	YGGCCR	2 cut(s)	1216, 2116
Eam1104I	CTCTTC	1 cut(s)	2505
EarI	CTCTTC	1 cut(s)	2505
Eco130I	CCWWGG	2 cut(s)	2104, 2282
Eco147I	AGGCCT	1 cut(s)	1483
Eco24I	GRGCYC	1 cut(s)	1947
Eco31I	GGTCTC	2 cut(s)	305, 1468
Eco32I	GATATC	1 cut(s)	2053
Eco47I	GGWCC	4 cut(s)	52, 178, 1847, 1885
Eco81I	CCTNAGG	1 cut(s)	1401
EcoRV	GATATC	1 cut(s)	2053
EcoT14I	CCWWGG	2 cut(s)	2104, 2282
EcoT22I	ATGCAT	1 cut(s)	2193
EcoT38I	GRGCYC	1 cut(s)	1947
ErhI	CCWWGG	2 cut(s)	2104, 2282
FaeI	CATG	5 cut(s)	1474, 1621, 1729, 2195, 2597
FalI	AAGNNNNNCTT	1 cut(s)	2640
FaqI	GGGAC	5 cut(s)	191, 703, 1271, 1743, 1771
FatI	CATG	5 cut(s)	1470, 1617, 1725, 2191, 2593
FauI	CCCGC	1 cut(s)	1507
FauNDI	CATATG	2 cut(s)	1987, 2551
FbaI	TGATCA	2 cut(s)	1549, 2194
FblI	GTMKAC	1 cut(s)	1153
FokI	GGATG	6 cut(s)	269, 1402, 1784, 1857, 1982, 2610
FriOI	GRGCYC	1 cut(s)	1947
GsuI	CTGGAG	5 cut(s)	5, 149, 1200, 1562, 2028
HaeIII	GGCC	7 cut(s)	137, 348, 1209, 1218, 1432, 1483, 2118
HapII	CCGG	5 cut(s)	13, 529, 857, 1387, 2163
Hin1II	CATG	5 cut(s)	1474, 1621, 1729, 2195, 2597
HincII	GTYRAC	1 cut(s)	2090
HindII	GTYRAC	1 cut(s)	2090
HindIII	AAGCTT	3 cut(s)	266, 324, 1138
HpaII	CCGG	5 cut(s)	13, 529, 857, 1387, 2163
HphI	GGTGA	2 cut(s)	238, 1152
Hpy166II	GTNNAC	9 cut(s)	97, 758, 932, 1016, 1154, 1847, 2090, 2557, 2625
Hpy8I	GTNNAC	9 cut(s)	97, 758, 932, 1016, 1154, 1847, 2090, 2557, 2625
HpyCH4IV	ACGT	5 cut(s)	643, 900, 1150, 2263, 2359
HpySE526I	ACGT	5 cut(s)	643, 900, 1150, 2263, 2359
Hsp92II	CATG	5 cut(s)	1474, 1621, 1729, 2195, 2597
Kpn2I	TCCGGA	1 cut(s)	2162
Ksp22I	TGATCA	2 cut(s)	1549, 2194
LguI	GCTCTTC	1 cut(s)	2505
LmnI	GCTCC	5 cut(s)	24, 168, 1325, 1581, 1936
LweI	GCATC	7 cut(s)	247, 753, 800, 806, 956, 1852, 2205
MabI	ACCWGGT	1 cut(s)	1747
MaeII	ACGT	5 cut(s)	643, 900, 1150, 2263, 2359
MaeIII	GTNAC	3 cut(s)	1060, 1382, 1598
MfeI	CAATTG	2 cut(s)	1992, 2145
MflI	RGATCY	1 cut(s)	1221
MhlI	GDGCHC	3 cut(s)	760, 934, 1947
MlsI	TGGCCA	1 cut(s)	1218
MluCI	AATT	7 cut(s)	1639, 1690, 1792, 1992, 2145, 2176, 2206
MluNI	TGGCCA	1 cut(s)	1218
MlyI	GAGTC	5 cut(s)	725, 1907, 2039, 2095, 2249
MmeI	TCCRAC	2 cut(s)	405, 534
Mox20I	TGGCCA	1 cut(s)	1218
Mph1103I	ATGCAT	1 cut(s)	2193
MroI	TCCGGA	1 cut(s)	2162
MroXI	GAANNNNTTC	1 cut(s)	2128
MscI	TGGCCA	1 cut(s)	1218
MseI	TTAA	5 cut(s)	156, 294, 566, 1689, 2337
Msp20I	TGGCCA	1 cut(s)	1218
MspA1I	CMGCKG	3 cut(s)	169, 1031, 1573
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	5 cut(s)	13, 529, 857, 1387, 2163
MunI	CAATTG	2 cut(s)	1992, 2145
Mva1269I	GAATGC	1 cut(s)	1075
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	2 cut(s)	1987, 2551
NheI	GCTAGC	1 cut(s)	2099
NlaIII	CATG	5 cut(s)	1474, 1621, 1729, 2195, 2597
NlaIV	GGNNCC	5 cut(s)	179, 1260, 1577, 1746, 2288
NmuCI	GTSAC	2 cut(s)	1060, 1598
NsiI	ATGCAT	1 cut(s)	2193
NspI	RCATGY	2 cut(s)	1474, 1621
PaeI	GCATGC	2 cut(s)	1474, 1621
PasI	CCCWGGG	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	2505
PctI	GAATGC	1 cut(s)	1075
PdmI	GAANNNNTTC	1 cut(s)	2128
PfeI	GAWTC	9 cut(s)	196, 428, 964, 1439, 1669, 1900, 1925, 1954, 1997
PflFI	GACNNNGTC	1 cut(s)	2029
PflMI	CCANNNNNTGG	1 cut(s)	1754
PfoI	TCCNGGA	1 cut(s)	54
Ple19I	CGATCG	1 cut(s)	37
PleI	GAGTC	5 cut(s)	724, 1907, 2038, 2094, 2249
PpsI	GAGTC	5 cut(s)	724, 1907, 2038, 2094, 2249
Psp1406I	AACGTT	2 cut(s)	900, 2359
PspN4I	GGNNCC	5 cut(s)	179, 1260, 1577, 1746, 2288
PspPI	GGNCC	6 cut(s)	52, 178, 346, 1430, 1847, 1885
PsrI	GAACNNNNNNTAC	2 cut(s)	1438, 1470
PstNI	CAGNNNCTG	2 cut(s)	250, 1079
PsuI	RGATCY	1 cut(s)	1221
PsyI	GACNNNGTC	1 cut(s)	2029
PvuI	CGATCG	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	2505
SaqAI	TTAA	5 cut(s)	156, 294, 566, 1689, 2337
Sau96I	GGNCC	6 cut(s)	52, 178, 346, 1430, 1847, 1885
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	5 cut(s)	725, 1907, 2039, 2095, 2249
SduI	GDGCHC	3 cut(s)	760, 934, 1947
SexAI	ACCWGGT	1 cut(s)	1747
SfaNI	GCATC	7 cut(s)	247, 753, 800, 806, 956, 1852, 2205
SfcI	CTRYAG	1 cut(s)	2331
SfiI	GGCCNNNNNGGCC	1 cut(s)	1215
SinI	GGWCC	4 cut(s)	52, 178, 1847, 1885
SmlI	CTYRAG	5 cut(s)	44, 565, 1716, 2037, 2219
SmoI	CTYRAG	5 cut(s)	44, 565, 1716, 2037, 2219
SphI	GCATGC	2 cut(s)	1474, 1621
Sse9I	AATT	7 cut(s)	1639, 1690, 1792, 1992, 2145, 2176, 2206
SseBI	AGGCCT	1 cut(s)	1483
SsiI	CCGC	4 cut(s)	169, 494, 1514, 1573
SspI	AATATT	2 cut(s)	1318, 2435
StuI	AGGCCT	1 cut(s)	1483
StyI	CCWWGG	2 cut(s)	2104, 2282
TaiI	ACGT	5 cut(s)	646, 903, 1153, 2266, 2362
TaqI	TCGA	5 cut(s)	33, 75, 1916, 2055, 2084
TasI	AATT	7 cut(s)	1639, 1690, 1792, 1992, 2145, 2176, 2206
TatI	WGTACW	3 cut(s)	839, 847, 2556
TauI	GCSGC	1 cut(s)	1576
TfiI	GAWTC	9 cut(s)	196, 428, 964, 1439, 1669, 1900, 1925, 1954, 1997
Tru1I	TTAA	5 cut(s)	156, 294, 566, 1689, 2337
Tru9I	TTAA	5 cut(s)	156, 294, 566, 1689, 2337
TscAI	CASTG	6 cut(s)	211, 415, 934, 1219, 1258, 1423
TseFI	GTSAC	2 cut(s)	1060, 1598
Tsp45I	GTSAC	2 cut(s)	1060, 1598
TspGWI	ACGGA	1 cut(s)	1550
TspRI	CASTG	6 cut(s)	211, 415, 934, 1219, 1258, 1423
Tth111I	GACNNNGTC	1 cut(s)	2029
Van91I	CCANNNNNTGG	1 cut(s)	1754
Vha464I	CTTAAG	1 cut(s)	565
VneI	GTGCAC	2 cut(s)	756, 930
VpaK11BI	GGWCC	4 cut(s)	52, 178, 1847, 1885
XapI	RAATTY	2 cut(s)	1639, 1792
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	1474, 1621
XmiI	GTMKAC	1 cut(s)	1153
XmnI	GAANNNNTTC	1 cut(s)	2128
ZrmI	AGTACT	1 cut(s)	841
Zsp2I	ATGCAT	1 cut(s)	2193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.