FvH4_5g06390

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015623
Physical Location & Seq
Forward (+)
3745845 .. 3747582
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06390.t2

Sequence Viewer

Length: 1095 bp
ATGTTATTAAAATTCCATACTACTCACAGATTTCACAATCCAGCTCTCCCCAATTTGTTTCCCTCCCTAGCCTCCTCACAACTCACAACTTCTTACACTATGCAAGACCACATTGGCATCCCTGCTTGCTTTTCTTCAGCTGAGAAGCTCAGTGATGATGCCTCAGCTGTGACCAGGTCAGGCCACAGTGTCTACATGTCAGTCTACAGAGCCAAGCTTGCTGGCCAGAGCCGCTTGATCACAATCACATGGTGCAAAAACCTTCTCCTTCATGGCCTCTCAGTCTCTGTGGAGGGCCCTGATGGAGAGAACCACCATTCCTGCAAAGTTGAGCTCAAGCCATGGTACTTCTGGAGAAAACAAGGCTCGAAGCGCTTTGCGGTCAATGGGAAACAAGTTGACATTTTCTGGGATCTTAAGGCTGCAAAGTTCAATGGTGGAACTGAGCCGAAGTCCGAGTATTATGTTGCAGTTGTCTGTGAGGAAGAGGTTGTGTTACTACTTGGTGATCTTAAGAAAGATGCATATAAGAAGACAGGGTTTAGGCCTGCTTTGATTGATCCCGTTTTGGTTTCTAAAAAAGAACACATCTTTGGCAAGAAAAAGTTTACCACAAAGGCCAAGTTTTATGAGAAGGGCAGGCTTCATGAAATCTCTATTGAGTGCAAGAATAGAGCCGCAAATTTGGGCAATGCTGGCAGTTCTGCAAATGGGGTTGAGCCAGAGTTGGAGATTAGAGTAGATGGACATTTGGTGGTTCATGTCAAACACCTTCAGTGGAAGTTCAGAGGTAATGAATCTATTCATATCAATAAGTTGAGAATAGAGGTGTATTGGGATGTGCATGATTGGTTGTTTAGTCCTGGTTTAAGGCATGCATTGTTCATTTTCAAGCCAATTTTGCCTTCCACATCTCTATCACCATTGTCTAGATCATCTTCTTCGTCGCCGCCTTCATCTTCCTTGTCATCAACACTATCTTCTCACATGTCATCAACACTATCTTCCCAAACAAGTTGTGGTTCACTAGAAGGGCTTAATGCAAGTGGCTCTTCTGAGTTTTGCTTGTTTCTTTATGCTTGGAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

365

Amino Acids

40.6

Weight (kDa)

9.22

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 61 - 264 6.3e-81 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 192, 204
AciI CCGC 4 cut(s) 232, 380, 678, 950
AclWI GGATC 2 cut(s) 420, 554
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 11, 682
AcuI CTGAAG 2 cut(s) 120, 758
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 1 cut(s) 347
AfeI AGCGCT 1 cut(s) 374
AflII CTTAAG 2 cut(s) 416, 512
AflIII ACRYGT 2 cut(s) 195, 987
AgsI TTSAA 3 cut(s) 433, 892, 1091
AjnI CCWGG 2 cut(s) 173, 862
AjuI GAANNNNNNNTTGG 4 cut(s) 576, 608, 889, 921
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 6 cut(s) 44, 140, 148, 167, 217, 334
AluI AGCT 6 cut(s) 44, 140, 148, 167, 217, 334
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 420, 554
AlwNI CAGNNNCTG 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 374
AoxI GGCC 6 cut(s) 181, 223, 274, 295, 545, 618
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 11, 682
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 295, 296
AsuHPI GGTGA 2 cut(s) 518, 912
BaeGI GKGCMC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 225
BanII GRGCYC 2 cut(s) 299, 336
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 409
BccI CCATC 2 cut(s) 296, 737
BciT130I CCWGG 2 cut(s) 175, 864
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 68, 930, 1028
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 376
BfrI CTTAAG 2 cut(s) 416, 512
BisI GCNGC 4 cut(s) 232, 423, 678, 950
BlsI GCNGC 4 cut(s) 233, 424, 679, 951
Bme1390I CCNGG 2 cut(s) 175, 864
BmgT120I GGNCC 2 cut(s) 295, 296
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 2 cut(s) 175, 864
BmsI GCATC 3 cut(s) 126, 148, 511
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 373
Bpu10I CCTNAGC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 697
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 175, 864
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 117, 844
BseJI GATNNNNATC 1 cut(s) 242
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 6 cut(s) 132, 163, 177, 294, 435, 1047
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 6 cut(s) 183, 225, 276, 297, 547, 620
BsiHKAI GWGCWC 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 6 cut(s) 183, 225, 276, 297, 547, 620
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 336
Bsp143I GATC 5 cut(s) 237, 412, 508, 559, 932
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 4 cut(s) 232, 380, 678, 950
BspANI GGCC 6 cut(s) 183, 225, 276, 297, 547, 620
BspCNI CTCAG 6 cut(s) 133, 162, 176, 293, 436, 1048
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 2 cut(s) 420, 554
BspQI GCTCTTC 1 cut(s) 1057
BspTI CTTAAG 2 cut(s) 416, 512
BsrDI GCAATG 1 cut(s) 697
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 5 cut(s) 237, 412, 508, 559, 932
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 175, 864
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 2 cut(s) 480, 1057
BstAFI CTTAAG 2 cut(s) 416, 512
BstC8I GCNNGC 7 cut(s) 127, 219, 223, 549, 641, 697, 876
BstDEI CTNAG 6 cut(s) 141, 149, 163, 280, 444, 1056
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 117, 844
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 5 cut(s) 240, 415, 511, 562, 935
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 5 cut(s) 237, 412, 508, 559, 932
BstMWI GCNNNNNNNGC 5 cut(s) 218, 231, 372, 696, 901
BstNI CCWGG 2 cut(s) 175, 864
BstNSI RCATGY 3 cut(s) 199, 878, 991
BstSCI CCNGG 2 cut(s) 173, 862
BstSFI CTRYAG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 6 cut(s) 183, 225, 276, 297, 547, 620
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 2 cut(s) 117, 844
BtsIMutI CAGTG 3 cut(s) 157, 193, 782
Cac8I GCNNGC 7 cut(s) 127, 219, 223, 549, 641, 697, 876
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 295, 296
CsiI ACCWGGT 1 cut(s) 173
Csp6I GTAC 1 cut(s) 346
CviAII CATG 9 cut(s) 196, 249, 272, 342, 647, 761, 845, 875, 988
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 6 cut(s) 141, 149, 163, 280, 444, 1056
DpnI GATC 5 cut(s) 239, 414, 510, 561, 934
DpnII GATC 5 cut(s) 237, 412, 508, 559, 932
DraIII CACNNNGTG 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 480, 1057
EarI CTCTTC 2 cut(s) 480, 1057
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 299, 336
Eco47III AGCGCT 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 120, 758
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 295, 296
EcoRII CCWGG 2 cut(s) 173, 862
EcoT14I CCWWGG 1 cut(s) 341
EcoT22I ATGCAT 2 cut(s) 526, 880
EcoT38I GRGCYC 2 cut(s) 299, 336
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 9 cut(s) 199, 252, 275, 345, 650, 764, 848, 878, 991
FalI AAGNNNNNCTT 2 cut(s) 1036, 1068
FatI CATG 9 cut(s) 195, 248, 271, 341, 646, 760, 844, 874, 987
FbaI TGATCA 1 cut(s) 237
FblI GTMKAC 2 cut(s) 192, 204
Fnu4HI GCNGC 4 cut(s) 232, 423, 678, 950
FokI GGATG 2 cut(s) 104, 851
FriOI GRGCYC 2 cut(s) 299, 336
Fsp4HI GCNGC 4 cut(s) 232, 423, 678, 950
FspBI CTAG 3 cut(s) 68, 930, 1028
GlaI GCGC 1 cut(s) 374
GluI GCNGC 4 cut(s) 232, 423, 678, 950
GsuI CTGGAG 1 cut(s) 373
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 6 cut(s) 183, 225, 276, 297, 547, 620
HhaI GCGC 1 cut(s) 375
Hin1II CATG 9 cut(s) 199, 252, 275, 345, 650, 764, 848, 878, 991
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 1 cut(s) 797
HphI GGTGA 2 cut(s) 518, 912
Hpy166II GTNNAC 5 cut(s) 193, 205, 400, 609, 1025
Hpy188I TCNGA 3 cut(s) 457, 788, 1057
Hpy188III TCNNGA 3 cut(s) 352, 647, 930
Hpy8I GTNNAC 5 cut(s) 193, 205, 400, 609, 1025
Hpy99I CGWCG 1 cut(s) 949
HpyAV CCTTC 8 cut(s) 272, 278, 628, 782, 915, 963, 1025, 1078
HpyCH4III ACNGT 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 231, 372, 696, 901
HpyF3I CTNAG 6 cut(s) 141, 149, 163, 280, 444, 1056
Hsp92II CATG 9 cut(s) 199, 252, 275, 345, 650, 764, 848, 878, 991
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 5 cut(s) 237, 412, 508, 559, 932
LguI GCTCTTC 1 cut(s) 1057
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 3 cut(s) 126, 148, 511
MabI ACCWGGT 1 cut(s) 173
MaeI CTAG 3 cut(s) 68, 930, 1028
MaeIII GTNAC 2 cut(s) 169, 495
MalI GATC 5 cut(s) 239, 414, 510, 561, 934
MboI GATC 5 cut(s) 237, 412, 508, 559, 932
MboII GAAGA 9 cut(s) 126, 497, 544, 930, 933, 951, 972, 996, 1044
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 299, 336
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 4 cut(s) 11, 52, 682, 897
MluNI TGGCCA 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 708
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 2 cut(s) 526, 880
MroXI GAANNNNTTC 1 cut(s) 801
MscI TGGCCA 1 cut(s) 225
MseI TTAA 5 cut(s) 8, 417, 513, 869, 1038
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 140, 167
MspCI CTTAAG 2 cut(s) 416, 512
MspR9I CCNGG 2 cut(s) 175, 864
MvaI CCWGG 2 cut(s) 175, 864
MwoI GCNNNNNNNGC 5 cut(s) 218, 231, 372, 696, 901
NcoI CCATGG 1 cut(s) 341
NdeII GATC 5 cut(s) 237, 412, 508, 559, 932
NlaIII CATG 9 cut(s) 199, 252, 275, 345, 650, 764, 848, 878, 991
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 2 cut(s) 526, 880
NspI RCATGY 3 cut(s) 199, 878, 991
PaeI GCATGC 1 cut(s) 878
PagI TCATGA 1 cut(s) 646
PceI AGGCCT 1 cut(s) 547
PciI ACATGT 2 cut(s) 195, 987
PciSI GCTCTTC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 1 cut(s) 797
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 4 cut(s) 233, 424, 679, 951
PscI ACATGT 2 cut(s) 195, 987
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 173, 862
PspGI CCWGG 2 cut(s) 173, 862
PspN4I GGNNCC 1 cut(s) 297
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 295, 296
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 412
PsyI GACNNNGTC 1 cut(s) 175
PvuII CAGCTG 2 cut(s) 140, 167
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacI GAGCTC 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 5 cut(s) 8, 417, 513, 869, 1038
SatI GCNGC 4 cut(s) 232, 423, 678, 950
Sau3AI GATC 5 cut(s) 237, 412, 508, 559, 932
Sau96I GGNCC 2 cut(s) 295, 296
ScrFI CCNGG 2 cut(s) 175, 864
SduI GDGCHC 2 cut(s) 299, 336
SexAI ACCWGGT 1 cut(s) 173
SfaNI GCATC 3 cut(s) 126, 148, 511
SfcI CTRYAG 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 335, 416, 512
SmoI CTYRAG 3 cut(s) 335, 416, 512
SphI GCATGC 1 cut(s) 878
Sse9I AATT 4 cut(s) 11, 52, 682, 897
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 4 cut(s) 232, 380, 678, 950
SspMI CTAG 3 cut(s) 68, 930, 1028
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 173, 862
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 11, 52, 682, 897
TauI GCSGC 3 cut(s) 234, 680, 952
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 5 cut(s) 8, 417, 513, 869, 1038
Tru9I TTAA 5 cut(s) 8, 417, 513, 869, 1038
TscAI CASTG 3 cut(s) 157, 193, 782
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 8 cut(s) 260, 635, 663, 749, 794, 810, 874, 945
TspRI CASTG 3 cut(s) 157, 193, 782
Tth111I GACNNNGTC 1 cut(s) 175
Vha464I CTTAAG 2 cut(s) 416, 512
XapI RAATTY 2 cut(s) 11, 682
XbaI TCTAGA 1 cut(s) 929
XceI RCATGY 3 cut(s) 199, 878, 991
XcmI CCANNNNNNNNNTGG 2 cut(s) 348, 1016
XmiI GTMKAC 2 cut(s) 192, 204
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 3 cut(s) 68, 930, 1028
Zsp2I ATGCAT 2 cut(s) 526, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.