Rh7BG127600

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015623
Physical Location & Seq
Reverse (-)
9443474 .. 9445556
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG127600.1

Sequence Viewer

Length: 1059 bp
ATGTTATTAAAATTCCCTCTACTCACAGATTTCACAATCCAACTCTCTCCAATTTGTTTCCCTCCTCCCTCCTCACAACTTCTCACTATGCAAGACCACATTGGCATCCCTGCTTGCTTTTCTTCAGCTGAGAAGCTCAGTGATGATGCCTCAGCCGTGACCAGGTCAGGCCACAGTGTCTACATGTCAGTCTACAGAGCCAAGATTGCTGATCAGAGCCGCCTGATCACAATCACATGGTGCAAAAACCTTCTCCTTCATGGCCTCTCAGTCTCTGTGGAGGGCCCAGATGGAGAGAACCACCATTCCTGCAAAGTTGAGCTCAAGCCATGGTACTTCTGGAGAAAACAAGGCTCGAAGCGGTTTGCTGTCAATGGGAAAACTGTCGACATTTTCTGGGATCTCAAGGCTGCAAAATTTAATGGTGGAACTGAGCCAAAGTCTGAGTATTATGTTGCAGTTGTCTGTGAGGAAGAGGTTGTGTTACTGCTCGGTGATCTTAAGAAAGATGCATATAAGAAGACAGGGTTTAGGCCTGCTTTGATTGATCCCATTTTGGTTTCTAAAAAAGAACACATCTTTGGCAAGAAGAAGTTTACCACAAAGGCCAAGTTTTATGAGAAGGGCAGGCTTCATGAAATCTCTATTGAGTGCAAGAATAGAGCTGCAAACATGGGCAATGTTGGGAATTCAGTAAATGGGGTTGAGCCAGAGTTGGAGATTAGAGTAGATGGGCATTTGGTGGTTCATGTCAAACACCTTCAGTGGAAGTTCAGAGGTAATGAGTCTATTCATATTAACAAGTTAAGAATAGAGGTGTATTGGGATGTCCATGACTGGTTGTTTAGTCCTGGTTTAAGGCATGCATTGTTTATTTTCAAGCCAATTTTGCCTTCCACATCTCTATCACCACTGTCTAGGTCATCTTCTTCTTCGCCGCCTTCATCTTCCCTGTCATCAACACTGTCTTCCCAGACAAGTTGTGGTTCACTAGAAGGGCTTAATGCAAGTGGCTCTTCTGAGTTTTGCTTGTTTCTTTATGCTTGGAAGGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

352

Amino Acids

39.41

Weight (kDa)

8.95

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 57 - 350 3e-108 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 180, 192, 387
AciI CCGC 3 cut(s) 220, 361, 938
AclWI GGATC 2 cut(s) 408, 542
AcsI RAATTY 3 cut(s) 11, 416, 688
AcuI CTGAAG 2 cut(s) 108, 746
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 162
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 1 cut(s) 880
AjnI CCWGG 2 cut(s) 161, 850
AjuI GAANNNNNNNTTGG 4 cut(s) 564, 596, 877, 909
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 128, 136, 322, 665
AluI AGCT 4 cut(s) 128, 136, 322, 665
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 408, 542
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 5 cut(s) 169, 262, 283, 533, 606
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 410, 665
ApoI RAATTY 3 cut(s) 11, 416, 688
AspS9I GGNCC 2 cut(s) 283, 284
AsuHPI GGTGA 2 cut(s) 506, 900
BaeGI GKGCMC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 287, 324
BbsI GAAGAC 2 cut(s) 527, 960
Bbv12I GWGCWC 1 cut(s) 324
BbvCI CCTCAGC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 397, 652
BccI CCATC 2 cut(s) 284, 725
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 163, 852
BclI TGATCA 2 cut(s) 211, 225
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 918, 992
BfmI CTRYAG 1 cut(s) 193
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 4 cut(s) 220, 411, 666, 938
BlsI GCNGC 4 cut(s) 221, 412, 667, 939
Bme1390I CCNGG 2 cut(s) 163, 852
BmgT120I GGNCC 2 cut(s) 283, 284
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 163, 852
BmsI GCATC 3 cut(s) 114, 136, 499
BpiI GAAGAC 2 cut(s) 527, 960
BpmI CTGGAG 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 151
BpuEI CTTGAG 2 cut(s) 308, 389
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 2 cut(s) 163, 852
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 105, 832
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 7 cut(s) 120, 151, 165, 282, 423, 435, 1011
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 2 cut(s) 54, 61
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 2 cut(s) 397, 652
BshFI GGCC 5 cut(s) 171, 264, 285, 535, 608
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 5 cut(s) 171, 264, 285, 535, 608
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 287, 324
Bsp143I GATC 5 cut(s) 211, 225, 400, 496, 547
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 3 cut(s) 220, 361, 938
BspANI GGCC 5 cut(s) 171, 264, 285, 535, 608
BspCNI CTCAG 7 cut(s) 121, 150, 164, 281, 424, 436, 1012
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 408, 542
BspQI GCTCTTC 1 cut(s) 1021
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 1 cut(s) 842
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 5 cut(s) 211, 225, 400, 496, 547
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 163, 852
Bst4CI ACNGT 4 cut(s) 176, 385, 915, 966
Bst6I CTCTTC 2 cut(s) 468, 1021
BstAFI CTTAAG 1 cut(s) 500
BstC8I GCNNGC 4 cut(s) 115, 537, 629, 864
BstDEI CTNAG 7 cut(s) 129, 137, 151, 268, 432, 444, 1020
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 105, 832
BstKTI GATC 5 cut(s) 214, 228, 403, 499, 550
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 5 cut(s) 211, 225, 400, 496, 547
BstMWI GCNNNNNNNGC 2 cut(s) 206, 889
BstNI CCWGG 2 cut(s) 163, 852
BstNSI RCATGY 2 cut(s) 187, 866
BstSCI CCNGG 2 cut(s) 161, 850
BstSFI CTRYAG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 397, 652
BstV2I GAAGAC 2 cut(s) 527, 960
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 5 cut(s) 171, 264, 285, 535, 608
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 2 cut(s) 105, 832
BtsIMutI CAGTG 5 cut(s) 145, 181, 770, 911, 962
Cac8I GCNNGC 4 cut(s) 115, 537, 629, 864
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 283, 284
CsiI ACCWGGT 1 cut(s) 161
Csp6I GTAC 1 cut(s) 334
CviAII CATG 9 cut(s) 184, 237, 260, 330, 635, 673, 749, 833, 863
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 7 cut(s) 129, 137, 151, 268, 432, 444, 1020
DpnI GATC 5 cut(s) 213, 227, 402, 498, 549
DpnII GATC 5 cut(s) 211, 225, 400, 496, 547
DraIII CACNNNGTG 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 468, 1021
EarI CTCTTC 2 cut(s) 468, 1021
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 329
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 2 cut(s) 287, 324
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 108, 746
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 161, 850
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 2 cut(s) 514, 868
EcoT38I GRGCYC 2 cut(s) 287, 324
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 9 cut(s) 187, 240, 263, 333, 638, 676, 752, 836, 866
FalI AAGNNNNNCTT 2 cut(s) 1000, 1032
FatI CATG 9 cut(s) 183, 236, 259, 329, 634, 672, 748, 832, 862
FbaI TGATCA 2 cut(s) 211, 225
FblI GTMKAC 3 cut(s) 180, 192, 387
Fnu4HI GCNGC 4 cut(s) 220, 411, 666, 938
FokI GGATG 2 cut(s) 92, 839
FriOI GRGCYC 2 cut(s) 287, 324
Fsp4HI GCNGC 4 cut(s) 220, 411, 666, 938
FspBI CTAG 2 cut(s) 918, 992
GluI GCNGC 4 cut(s) 220, 411, 666, 938
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 5 cut(s) 171, 264, 285, 535, 608
Hin1II CATG 9 cut(s) 187, 240, 263, 333, 638, 676, 752, 836, 866
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 1 cut(s) 785
HphI GGTGA 2 cut(s) 506, 900
Hpy166II GTNNAC 5 cut(s) 181, 193, 388, 597, 989
Hpy188I TCNGA 4 cut(s) 216, 445, 776, 1021
Hpy188III TCNNGA 2 cut(s) 340, 635
Hpy8I GTNNAC 5 cut(s) 181, 193, 388, 597, 989
HpyAV CCTTC 8 cut(s) 260, 266, 616, 770, 903, 951, 989, 1042
HpyCH4III ACNGT 4 cut(s) 176, 385, 915, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 889
HpyF3I CTNAG 7 cut(s) 129, 137, 151, 268, 432, 444, 1020
Hsp92II CATG 9 cut(s) 187, 240, 263, 333, 638, 676, 752, 836, 866
Ksp22I TGATCA 2 cut(s) 211, 225
Kzo9I GATC 5 cut(s) 211, 225, 400, 496, 547
LguI GCTCTTC 1 cut(s) 1021
Lsp1109I GCAGC 2 cut(s) 397, 652
LweI GCATC 3 cut(s) 114, 136, 499
MabI ACCWGGT 1 cut(s) 161
MaeI CTAG 2 cut(s) 918, 992
MaeIII GTNAC 2 cut(s) 157, 483
MalI GATC 5 cut(s) 213, 227, 402, 498, 549
MboI GATC 5 cut(s) 211, 225, 400, 496, 547
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 287, 324
MluCI AATT 5 cut(s) 11, 51, 416, 688, 885
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 2 cut(s) 64, 696
Mph1103I ATGCAT 2 cut(s) 514, 868
MseI TTAA 7 cut(s) 8, 420, 501, 798, 806, 857, 1002
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 163, 852
MvaI CCWGG 2 cut(s) 163, 852
MwoI GCNNNNNNNGC 2 cut(s) 206, 889
NcoI CCATGG 1 cut(s) 329
NdeII GATC 5 cut(s) 211, 225, 400, 496, 547
NlaIII CATG 9 cut(s) 187, 240, 263, 333, 638, 676, 752, 836, 866
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 2 cut(s) 514, 868
NspI RCATGY 2 cut(s) 187, 866
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 634
PceI AGGCCT 1 cut(s) 535
PciI ACATGT 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 1021
PflFI GACNNNGTC 1 cut(s) 163
PkrI GCNGC 4 cut(s) 221, 412, 667, 939
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 161, 850
PspGI CCWGG 2 cut(s) 161, 850
PspN4I GGNNCC 1 cut(s) 285
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 2 cut(s) 283, 284
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 7 cut(s) 8, 420, 501, 798, 806, 857, 1002
SatI GCNGC 4 cut(s) 220, 411, 666, 938
Sau3AI GATC 5 cut(s) 211, 225, 400, 496, 547
Sau96I GGNCC 2 cut(s) 283, 284
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 2 cut(s) 163, 852
SduI GDGCHC 2 cut(s) 287, 324
SexAI ACCWGGT 1 cut(s) 161
SfaNI GCATC 3 cut(s) 114, 136, 499
SfcI CTRYAG 1 cut(s) 193
SmlI CTYRAG 3 cut(s) 323, 404, 500
SmoI CTYRAG 3 cut(s) 323, 404, 500
SphI GCATGC 1 cut(s) 866
Sse9I AATT 5 cut(s) 11, 51, 416, 688, 885
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 3 cut(s) 220, 361, 938
SspMI CTAG 2 cut(s) 918, 992
SstI GAGCTC 1 cut(s) 324
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 2 cut(s) 161, 850
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 4 cut(s) 176, 385, 915, 966
TaqI TCGA 2 cut(s) 356, 387
TasI AATT 5 cut(s) 11, 51, 416, 688, 885
TauI GCSGC 2 cut(s) 222, 940
Tru1I TTAA 7 cut(s) 8, 420, 501, 798, 806, 857, 1002
Tru9I TTAA 7 cut(s) 8, 420, 501, 798, 806, 857, 1002
TscAI CASTG 5 cut(s) 145, 181, 770, 918, 969
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 410, 665
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 6 cut(s) 248, 623, 651, 737, 782, 933
TspRI CASTG 5 cut(s) 145, 181, 770, 918, 969
Tth111I GACNNNGTC 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 500
XapI RAATTY 3 cut(s) 11, 416, 688
XceI RCATGY 2 cut(s) 187, 866
XcmI CCANNNNNNNNNTGG 2 cut(s) 336, 980
XmiI GTMKAC 3 cut(s) 180, 192, 387
XspI CTAG 2 cut(s) 918, 992
Zsp2I ATGCAT 2 cut(s) 514, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.