Rmu_sc0003108.1_g000024

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003108.1
OG0015623
Physical Location & Seq
Reverse (-)
90913 .. 91884
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003108.1_g000024.1.cds

Sequence Viewer

Length: 972 bp
atgcaagaccacattggcatccctgcttgcttttcttcagctgagaagctcagtgatgatgcctcagccgtgaccaggtcaggccacagtgtctacatgtcagtctacagagccaaaattgctgatcagagccgtctgatcacaatcacatggtgcaaaaaccttctccttcatggcctctcagtctctgtggagggcccagatggagagaaccaccattcctgcaaagttgagctcaagccatggtacttctggagaaaacaaggctcgaagcggtttgctgtcaatgggaaatctgtcgacattttctgggatctcaaggctgcaaaatttaatggtggaactgagccaaagtctgagtattatgttgcggttgtctgtgaggaagaggttgtgttactgctcggtgatcttaagaaagatgcatacaagaagacagggtttaggcctgctttgattgatcccattttggtttctaaaaaagaacacatctttggcaagaagaagtttaccacaaaggccaagttttatgagaagggcaggcttcatgaaatctctattgagtgcaagaatagagctgcaaacacgggcaatgttgggaattcagtaaatggcgttgagccagagttggagattagagtagatgggcatttggtggttcatgtcaaacaccttcagtggaagttcagaggtaatgagtctattcatattaacaagttaagaatagaggtgtattgggatgtccatgactggttgtttagtcctggtttaaggcatgcattgtttattttcaagccaattttgccttccacatctctatcaccactgtctaggtcatcttcttcttcgccgccttcatcttccctgtcatcaacactgtcttcccagacaagttgtggttcactagaagggcttaatgcaagtggctcttctgagttttgcttgtttctttatgcttggaaggttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

323

Amino Acids

36.12

Weight (kDa)

9.0

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 93, 105, 300
AciI CCGC 3 cut(s) 274, 371, 851
AclWI GGATC 2 cut(s) 321, 455
AcsI RAATTY 2 cut(s) 329, 601
AcuI CTGAAG 2 cut(s) 21, 659
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 75
AflII CTTAAG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 793
AjnI CCWGG 2 cut(s) 74, 763
AjuI GAANNNNNNNTTGG 4 cut(s) 477, 509, 790, 822
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 41, 49, 235, 578
AluI AGCT 4 cut(s) 41, 49, 235, 578
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 321, 455
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 5 cut(s) 82, 175, 196, 446, 519
ApaI GGGCCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 323, 578
ApoI RAATTY 2 cut(s) 329, 601
AspS9I GGNCC 2 cut(s) 196, 197
AsuHPI GGTGA 2 cut(s) 419, 813
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 200, 237
BbsI GAAGAC 2 cut(s) 440, 873
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 310, 565
BccI CCATC 2 cut(s) 197, 638
BceAI ACGGC 2 cut(s) 53, 117
BciT130I CCWGG 2 cut(s) 76, 765
BclI TGATCA 2 cut(s) 124, 138
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 831, 905
BfmI CTRYAG 1 cut(s) 106
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 3 cut(s) 324, 579, 851
BlsI GCNGC 3 cut(s) 325, 580, 852
Bme1390I CCNGG 2 cut(s) 76, 765
BmgT120I GGNCC 2 cut(s) 196, 197
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 76, 765
BmsI GCATC 3 cut(s) 27, 49, 412
BpiI GAAGAC 2 cut(s) 440, 873
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 221, 302
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 76, 765
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 18, 745
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 7 cut(s) 33, 64, 78, 195, 336, 348, 924
BseNI ACTGG 1 cut(s) 755
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 2 cut(s) 310, 565
BshFI GGCC 5 cut(s) 84, 177, 198, 448, 521
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 5 cut(s) 84, 177, 198, 448, 521
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 200, 237
Bsp143I GATC 5 cut(s) 124, 138, 313, 409, 460
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 3 cut(s) 274, 371, 851
BspANI GGCC 5 cut(s) 84, 177, 198, 448, 521
BspCNI CTCAG 7 cut(s) 34, 63, 77, 194, 337, 349, 925
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 321, 455
BspQI GCTCTTC 1 cut(s) 934
BspTI CTTAAG 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 5 cut(s) 124, 138, 313, 409, 460
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 76, 765
Bst4CI ACNGT 3 cut(s) 89, 828, 879
Bst6I CTCTTC 2 cut(s) 381, 934
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 4 cut(s) 28, 450, 542, 777
BstDEI CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 933
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 18, 745
BstKTI GATC 5 cut(s) 127, 141, 316, 412, 463
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 5 cut(s) 124, 138, 313, 409, 460
BstMWI GCNNNNNNNGC 2 cut(s) 119, 802
BstNI CCWGG 2 cut(s) 76, 765
BstNSI RCATGY 2 cut(s) 100, 779
BstSCI CCNGG 2 cut(s) 74, 763
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 310, 565
BstV2I GAAGAC 2 cut(s) 440, 873
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 5 cut(s) 84, 177, 198, 448, 521
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 18, 745
BtsIMutI CAGTG 5 cut(s) 58, 94, 683, 824, 875
Cac8I GCNNGC 4 cut(s) 28, 450, 542, 777
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 196, 197
CsiI ACCWGGT 1 cut(s) 74
Csp6I GTAC 1 cut(s) 247
CviAII CATG 8 cut(s) 97, 150, 173, 243, 548, 662, 746, 776
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 933
DpnI GATC 5 cut(s) 126, 140, 315, 411, 462
DpnII GATC 5 cut(s) 124, 138, 313, 409, 460
DraIII CACNNNGTG 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 381, 934
EarI CTCTTC 2 cut(s) 381, 934
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 200, 237
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 21, 659
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 74, 763
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 2 cut(s) 427, 781
EcoT38I GRGCYC 2 cut(s) 200, 237
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 8 cut(s) 100, 153, 176, 246, 551, 665, 749, 779
FalI AAGNNNNNCTT 2 cut(s) 913, 945
FatI CATG 8 cut(s) 96, 149, 172, 242, 547, 661, 745, 775
FbaI TGATCA 2 cut(s) 124, 138
FblI GTMKAC 3 cut(s) 93, 105, 300
Fnu4HI GCNGC 3 cut(s) 324, 579, 851
FokI GGATG 2 cut(s) 5, 752
FriOI GRGCYC 2 cut(s) 200, 237
Fsp4HI GCNGC 3 cut(s) 324, 579, 851
FspBI CTAG 2 cut(s) 831, 905
GluI GCNGC 3 cut(s) 324, 579, 851
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 5 cut(s) 84, 177, 198, 448, 521
Hin1II CATG 8 cut(s) 100, 153, 176, 246, 551, 665, 749, 779
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 698
HphI GGTGA 2 cut(s) 419, 813
Hpy166II GTNNAC 5 cut(s) 94, 106, 301, 510, 902
Hpy188I TCNGA 5 cut(s) 129, 138, 358, 689, 934
Hpy188III TCNNGA 2 cut(s) 253, 548
Hpy8I GTNNAC 5 cut(s) 94, 106, 301, 510, 902
HpyAV CCTTC 8 cut(s) 173, 179, 529, 683, 816, 864, 902, 955
HpyCH4III ACNGT 3 cut(s) 89, 828, 879
HpyCH4V TGCA 9 cut(s) 4, 156, 225, 326, 425, 567, 581, 779, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 802
HpyF3I CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 933
Hsp92II CATG 8 cut(s) 100, 153, 176, 246, 551, 665, 749, 779
Ksp22I TGATCA 2 cut(s) 124, 138
Kzo9I GATC 5 cut(s) 124, 138, 313, 409, 460
LguI GCTCTTC 1 cut(s) 934
Lsp1109I GCAGC 2 cut(s) 310, 565
LweI GCATC 3 cut(s) 27, 49, 412
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 2 cut(s) 831, 905
MaeIII GTNAC 2 cut(s) 70, 396
MalI GATC 5 cut(s) 126, 140, 315, 411, 462
MboI GATC 5 cut(s) 124, 138, 313, 409, 460
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 200, 237
MluCI AATT 4 cut(s) 117, 329, 601, 798
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 7 cut(s) 73, 187, 188, 376, 382, 683, 721
Mph1103I ATGCAT 2 cut(s) 427, 781
MseI TTAA 6 cut(s) 333, 414, 711, 719, 770, 915
MspA1I CMGCKG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 76, 765
MvaI CCWGG 2 cut(s) 76, 765
MwoI GCNNNNNNNGC 2 cut(s) 119, 802
NcoI CCATGG 1 cut(s) 242
NdeII GATC 5 cut(s) 124, 138, 313, 409, 460
NlaIII CATG 8 cut(s) 100, 153, 176, 246, 551, 665, 749, 779
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 2 cut(s) 427, 781
NspI RCATGY 2 cut(s) 100, 779
PaeI GCATGC 1 cut(s) 779
PagI TCATGA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 448
PciI ACATGT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 934
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 325, 580, 852
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PscI ACATGT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 74, 763
PspGI CCWGG 2 cut(s) 74, 763
PspN4I GGNNCC 1 cut(s) 198
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 196, 197
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 934
SaqAI TTAA 6 cut(s) 333, 414, 711, 719, 770, 915
SatI GCNGC 3 cut(s) 324, 579, 851
Sau3AI GATC 5 cut(s) 124, 138, 313, 409, 460
Sau96I GGNCC 2 cut(s) 196, 197
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 2 cut(s) 76, 765
SduI GDGCHC 2 cut(s) 200, 237
SexAI ACCWGGT 1 cut(s) 74
SfaNI GCATC 3 cut(s) 27, 49, 412
SfcI CTRYAG 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 236, 317, 413
SmoI CTYRAG 3 cut(s) 236, 317, 413
SphI GCATGC 1 cut(s) 779
Sse9I AATT 4 cut(s) 117, 329, 601, 798
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 3 cut(s) 274, 371, 851
SspMI CTAG 2 cut(s) 831, 905
SstI GAGCTC 1 cut(s) 237
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 2 cut(s) 74, 763
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 3 cut(s) 89, 828, 879
TaqI TCGA 2 cut(s) 269, 300
TasI AATT 4 cut(s) 117, 329, 601, 798
TauI GCSGC 1 cut(s) 853
Tru1I TTAA 6 cut(s) 333, 414, 711, 719, 770, 915
Tru9I TTAA 6 cut(s) 333, 414, 711, 719, 770, 915
TscAI CASTG 5 cut(s) 58, 94, 683, 831, 882
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 323, 578
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 6 cut(s) 161, 536, 564, 650, 695, 846
TspRI CASTG 5 cut(s) 58, 94, 683, 831, 882
Tth111I GACNNNGTC 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 413
XapI RAATTY 2 cut(s) 329, 601
XceI RCATGY 2 cut(s) 100, 779
XcmI CCANNNNNNNNNTGG 2 cut(s) 249, 893
XmiI GTMKAC 3 cut(s) 93, 105, 300
XspI CTAG 2 cut(s) 831, 905
Zsp2I ATGCAT 2 cut(s) 427, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.