pycom06g14760

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015623
Physical Location & Seq
Reverse (-)
19427640 .. 19428664
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14760.1

Sequence Viewer

Length: 984 bp
ATGCAAGACCACATTGGCATTCCTGCTTGCTTCTCCTCAGGTGAGAAGTTAAATGATGATGCATCAGCTGTGGCTAGGTCAGGCCACAGTGTCTACATGTCAGTGTACAGAGCCAAGATAGCTGATCAGAGCCGATTGATCACGATCACATGGTGCAAAAACCTGCTCCTCCATGGCCTATCGCACACCCAACACAGCTTCAAAGTTGAGCTCAAGCCATGGTACTTCTGGAGGAAGCAAGGCTCCAAGTGCTTTGTGGTTGATGGGAAAGCAGTGGAGATCTTCTGGGACCTCAAGGCCACAAAATTCAACGGCGGGACGGAGCCCAAATCAGAGTACTACGTTGCGGTTCTTTGTGAGAAGGAAGTTGTTTTGCTTCTTGGTGATCTCAAAAAAGATGCATACAGAAAAACAGGTTTTAGACCTGCCCTCACCGATCCCACTTTGGTTTCTAAAAAAGAGCACATTTTTGGTAAGAAAAAGTTTTCCACAAAAGCAAAGTTTTATGAGAAAGGCAGGCTGCACGAAATTGCAATTGAATGCAAACACAGAGGCGGCGGCGGCGGTGGCGGTGGCGGTGGGAGCATTGGGAGTGGAAGTACCCTAAATGGGGTGGAGCCGGAGTTGGAGATTAGGGTTGATGGGCATTTGGTGGTTCATGTGAAGCATCTTCAATGGAAGTTTAGAGGTAATGAGTCCATTCGTATCAACAAGTTGAGAATTGAGGTCTATTGGGATGTCCATGACTGGCTTTTTAGTGCTGGATTAAGGCATGCATTGTTTATTTTCAAGCCAAGTTTGCCTGCTTCAAGTACCTCTCTGCCACCGTTATCGAGAACCTCGTCGTCCTCGCTGCCATTTTCTTCATCGGCATCAACTCCATTGTCATCTCAGACTAGTTCTGCATCAGTAGAAAGGATTAATGCAAGTTCTGCTTGTTCATCCGAGTTTTGCTTGTTTCTTTATGCCTGGAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

328

Amino Acids

36.26

Weight (kDa)

9.36

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 28 - 325 1.8e-98 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 171, 433
AccI GTMKAC 1 cut(s) 93
AciI CCGC 8 cut(s) 315, 347, 555, 558, 561, 564, 570, 576
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 5 cut(s) 107, 224, 338, 601, 814
AfiI CCNNNNNNNGG 2 cut(s) 609, 610
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 7 cut(s) 202, 310, 539, 674, 790, 810, 980
AhlI ACTAGT 1 cut(s) 896
AjnI CCWGG 1 cut(s) 968
AluBI AGCT 4 cut(s) 68, 122, 198, 211
AluI AGCT 4 cut(s) 68, 122, 198, 211
Alw21I GWGCWC 2 cut(s) 213, 465
AlwI GGATC 1 cut(s) 431
AoxI GGCC 3 cut(s) 82, 175, 297
ApeKI GCWGC 2 cut(s) 520, 853
ApoI RAATTY 1 cut(s) 305
AseI ATTAAT 1 cut(s) 921
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 53, 395, 424
AvaII GGWCC 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 37
BanII GRGCYC 2 cut(s) 213, 327
Bbv12I GWGCWC 2 cut(s) 213, 465
BbvI GCAGC 2 cut(s) 507, 840
BccI CCATC 2 cut(s) 257, 635
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 970
BclI TGATCA 2 cut(s) 124, 138
BcuI ACTAGT 1 cut(s) 896
BfaI CTAG 2 cut(s) 75, 897
BfuAI ACCTGC 2 cut(s) 171, 433
BglII AGATCT 1 cut(s) 279
BisI GCNGC 5 cut(s) 521, 556, 559, 562, 854
BlsI GCNGC 5 cut(s) 522, 557, 560, 563, 855
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 970
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 4 cut(s) 244, 290, 324, 618
BmrFI CCNGG 1 cut(s) 970
BmsI GCATC 6 cut(s) 49, 71, 388, 676, 881, 914
BpmI CTGGAG 1 cut(s) 250
BpuEI CTTGAG 2 cut(s) 197, 278
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 172, 218
BsaXI ACNNNNNCTCC 4 cut(s) 583, 608, 613, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 609, 610
Bse1I ACTGG 1 cut(s) 752
Bse21I CCTNAGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 1 cut(s) 970
BseDI CCNNGG 2 cut(s) 172, 218
BseGI GGATG 2 cut(s) 742, 941
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 609, 610
BseMII CTCAG 2 cut(s) 51, 905
BseNI ACTGG 1 cut(s) 752
BseRI GAGGAG 2 cut(s) 25, 158
BseXI GCAGC 2 cut(s) 507, 840
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 3 cut(s) 84, 177, 299
BsiHKAI GWGCWC 2 cut(s) 213, 465
BsiSI CCGG 1 cut(s) 620
BslFI GGGAC 2 cut(s) 302, 331
BslI CCNNNNNNNGG 2 cut(s) 609, 610
BsmFI GGGAC 2 cut(s) 302, 331
BsmI GAATGC 2 cut(s) 18, 545
BsnI GGCC 3 cut(s) 84, 177, 299
Bsp1286I GDGCHC 3 cut(s) 213, 327, 465
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 6 cut(s) 124, 138, 144, 279, 385, 436
Bsp19I CCATGG 2 cut(s) 172, 218
BspACI CCGC 8 cut(s) 315, 347, 555, 558, 561, 564, 570, 576
BspANI GGCC 3 cut(s) 84, 177, 299
BspCNI CTCAG 2 cut(s) 50, 904
BspLI GGNNCC 4 cut(s) 244, 290, 324, 618
BspMI ACCTGC 2 cut(s) 171, 433
BspPI GGATC 1 cut(s) 431
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 2 cut(s) 172, 218
BssMI GATC 6 cut(s) 124, 138, 144, 279, 385, 436
BssT1I CCWWGG 2 cut(s) 172, 218
Bst2UI CCWGG 1 cut(s) 970
Bst4CI ACNGT 2 cut(s) 89, 828
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 28, 518, 774, 804
BstDEI CTNAG 2 cut(s) 37, 891
BstDSI CCRYGG 2 cut(s) 172, 218
BstF5I GGATG 2 cut(s) 742, 941
BstKTI GATC 6 cut(s) 127, 141, 147, 282, 388, 439
BstMBI GATC 6 cut(s) 124, 138, 144, 279, 385, 436
BstMWI GCNNNNNNNGC 7 cut(s) 119, 249, 561, 567, 582, 799, 932
BstNI CCWGG 1 cut(s) 970
BstNSI RCATGY 2 cut(s) 100, 776
BstSCI CCNGG 1 cut(s) 968
BstV1I GCAGC 2 cut(s) 507, 840
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 84, 177, 299
BtgI CCRYGG 2 cut(s) 172, 218
BtsCI GGATG 2 cut(s) 742, 941
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 3 cut(s) 94, 108, 279
BveI ACCTGC 2 cut(s) 171, 433
Cac8I GCNNGC 4 cut(s) 28, 518, 774, 804
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 5 cut(s) 106, 223, 337, 600, 813
CviAII CATG 7 cut(s) 97, 150, 173, 219, 659, 743, 773
CviQI GTAC 5 cut(s) 106, 223, 337, 600, 813
DdeI CTNAG 2 cut(s) 37, 891
DpnI GATC 6 cut(s) 126, 140, 146, 281, 387, 438
DpnII GATC 6 cut(s) 124, 138, 144, 279, 385, 436
DraIII CACNNNGTG 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 172, 218
Eco24I GRGCYC 2 cut(s) 213, 327
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 172, 218
EcoT22I ATGCAT 3 cut(s) 64, 403, 778
EcoT38I GRGCYC 2 cut(s) 213, 327
ErhI CCWWGG 2 cut(s) 172, 218
FaeI CATG 7 cut(s) 100, 153, 176, 222, 662, 746, 776
FalI AAGNNNNNCTT 2 cut(s) 919, 951
FaqI GGGAC 2 cut(s) 302, 331
FatI CATG 7 cut(s) 96, 149, 172, 218, 658, 742, 772
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 2 cut(s) 124, 138
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 5 cut(s) 521, 556, 559, 562, 854
FokI GGATG 2 cut(s) 749, 928
FriOI GRGCYC 2 cut(s) 213, 327
Fsp4HI GCNGC 5 cut(s) 521, 556, 559, 562, 854
FspBI CTAG 2 cut(s) 75, 897
GluI GCNGC 5 cut(s) 521, 556, 559, 562, 854
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 3 cut(s) 84, 177, 299
HapII CCGG 1 cut(s) 620
Hin1II CATG 7 cut(s) 100, 153, 176, 222, 662, 746, 776
HinfI GANTC 1 cut(s) 695
HpaII CCGG 1 cut(s) 620
HphI GGTGA 3 cut(s) 53, 395, 424
Hpy166II GTNNAC 2 cut(s) 94, 106
Hpy188I TCNGA 4 cut(s) 129, 334, 894, 946
Hpy188III TCNNGA 3 cut(s) 142, 229, 834
Hpy8I GTNNAC 2 cut(s) 94, 106
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 2 cut(s) 355, 967
HpyCH4III ACNGT 2 cut(s) 89, 828
HpyCH4IV ACGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 249, 561, 567, 582, 799, 932
HpyF3I CTNAG 2 cut(s) 37, 891
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 7 cut(s) 100, 153, 176, 222, 662, 746, 776
Ksp22I TGATCA 2 cut(s) 124, 138
Kzo9I GATC 6 cut(s) 124, 138, 144, 279, 385, 436
LmnI GCTCC 5 cut(s) 171, 248, 322, 582, 616
Lsp1109I GCAGC 2 cut(s) 507, 840
LweI GCATC 6 cut(s) 49, 71, 388, 676, 881, 914
MaeI CTAG 2 cut(s) 75, 897
MaeII ACGT 1 cut(s) 342
MalI GATC 6 cut(s) 126, 140, 146, 281, 387, 438
MboI GATC 6 cut(s) 124, 138, 144, 279, 385, 436
MboII GAAGA 3 cut(s) 274, 662, 855
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 3 cut(s) 213, 327, 465
MluCI AATT 4 cut(s) 305, 528, 534, 720
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 606
Mph1103I ATGCAT 3 cut(s) 64, 403, 778
MseI TTAA 3 cut(s) 50, 767, 921
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 970
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 2 cut(s) 18, 545
MvaI CCWGG 1 cut(s) 970
MwoI GCNNNNNNNGC 7 cut(s) 119, 249, 561, 567, 582, 799, 932
NcoI CCATGG 2 cut(s) 172, 218
NdeII GATC 6 cut(s) 124, 138, 144, 279, 385, 436
NlaIII CATG 7 cut(s) 100, 153, 176, 222, 662, 746, 776
NlaIV GGNNCC 4 cut(s) 244, 290, 324, 618
NsiI ATGCAT 3 cut(s) 64, 403, 778
NspI RCATGY 2 cut(s) 100, 776
PaeI GCATGC 1 cut(s) 776
PciI ACATGT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 839
PctI GAATGC 2 cut(s) 18, 545
PkrI GCNGC 5 cut(s) 522, 557, 560, 563, 855
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 968
PspGI CCWGG 1 cut(s) 968
PspN4I GGNNCC 4 cut(s) 244, 290, 324, 618
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 5 cut(s) 107, 224, 338, 601, 814
RsaNI GTAC 5 cut(s) 106, 223, 337, 600, 813
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 3 cut(s) 50, 767, 921
SatI GCNGC 5 cut(s) 521, 556, 559, 562, 854
Sau3AI GATC 6 cut(s) 124, 138, 144, 279, 385, 436
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 970
SduI GDGCHC 3 cut(s) 213, 327, 465
SfaNI GCATC 6 cut(s) 49, 71, 388, 676, 881, 914
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 212, 293
SmoI CTYRAG 2 cut(s) 212, 293
SpeI ACTAGT 1 cut(s) 896
SphI GCATGC 1 cut(s) 776
Sse9I AATT 4 cut(s) 305, 528, 534, 720
SsiI CCGC 8 cut(s) 315, 347, 555, 558, 561, 564, 570, 576
SspMI CTAG 2 cut(s) 75, 897
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 968
StyI CCWWGG 2 cut(s) 172, 218
TaaI ACNGT 2 cut(s) 89, 828
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 833
TasI AATT 4 cut(s) 305, 528, 534, 720
TatI WGTACW 2 cut(s) 105, 336
TauI GCSGC 3 cut(s) 558, 561, 564
Tru1I TTAA 3 cut(s) 50, 767, 921
Tru9I TTAA 3 cut(s) 50, 767, 921
TscAI CASTG 3 cut(s) 94, 108, 279
TseI GCWGC 2 cut(s) 520, 853
TspDTI ATGAA 3 cut(s) 647, 855, 930
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 94, 108, 279
VpaK11BI GGWCC 1 cut(s) 289
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 1 cut(s) 305
XceI RCATGY 2 cut(s) 100, 776
XcmI CCANNNNNNNNNTGG 2 cut(s) 225, 253
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 2 cut(s) 75, 897
ZrmI AGTACT 1 cut(s) 338
Zsp2I ATGCAT 3 cut(s) 64, 403, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.