Rh7AG125300

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015623
Physical Location & Seq
Reverse (-)
9853618 .. 9855698
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG125300.1

Sequence Viewer

Length: 1056 bp
ATGTTATTAAAATTCCCTCTACTCACAGACTTCGCAATCCAACTCTCTCCAATTTGTTTCCCTCCCTCCTCACAACTTCTCACTATGCAAGACCACATTGGCATCCCTGCTTGCTTTTCTTCAGCTGAGAAGCTCAGTGATGATGCCTCAGCCGTGACCAGGTCAGGCCACAGTGTCTACATGTCAGTCTACAGAGCCAAGATTGCTGATCAGAGCCGCCTGATCACAATCACATGGTGCAAAAACCTTCTCCTTCATGGCCTCTCAGTCTCTGTGGAGGGCCCAGATGGAGAGAACCACCATTCCTGCAAAGTTGAGCTCAAGCCATGGTACTTCTGGAGAAAACAAGGCTCGAAGCGGTTTGCTGTCAATGGGAAATCTGTCGACATTTTCTGGGATCTCAAGGCTGCAAAATTTAATGGTGGAACTGAGCCAAAGTCTGAGTATTATGTTGCGGTTGTCTGTGAGGAAGAGGTTGTGTTACTGCTCGGTGATCTTAAGAAAGATGCATATAAGAAGACAGGGTTTAGGCCTGCTTTGATTGATCCCATTTTGGTTTCTAAAAAAGAACACATCTTTGGCAAGAAGAAGTTTACCACAAAGGCCAAGTTTTATGAGAAGGGCAGGCTTCATGAAATCTCTATTGAGTGCAAGAATAGAGCTGCAAACATGGGCAATGTTGGGAATTCAGTAAATGGCGTTGAGCCAGAGTTGGAGATTAGAGTAGATGGGCATTTGGTGGTTCATGTCAAACACCTTCAGTGGAAGTTCAGAGGTAATGAGTCTATTCATATTAACAAGTTAAGAATAGAGGTGTATTGGGATGTCCATGACTGGTTGTTTAGTCCTGGTTTAAGGCATGCATTGTTTATTTTCAAGCCAATTTTGCCTTCCACATCTCCATCACCACTGTCTAGGTCATCTTCTTCCTCGCCGCCTTCATCTTCCCTGTCATCAACACTGTCTTCCCAGACAAGTTGTGGTTCACTGGAAGGGCTTAATGCAAGTGGCTCTTCTGAGTTTTGCTTGTTTCTTTATGCTTGGAAGGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

351

Amino Acids

39.25

Weight (kDa)

8.95

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 56 - 349 3.1e-108 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 177, 189, 384
AciI CCGC 4 cut(s) 217, 358, 455, 935
AclWI GGATC 2 cut(s) 405, 539
AcsI RAATTY 3 cut(s) 11, 413, 685
AcuI CTGAAG 2 cut(s) 105, 743
AdeI CACNNNGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 159
AflII CTTAAG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 877
AjnI CCWGG 2 cut(s) 158, 847
AjuI GAANNNNNNNTTGG 4 cut(s) 561, 593, 874, 906
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 4 cut(s) 125, 133, 319, 662
AluI AGCT 4 cut(s) 125, 133, 319, 662
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 405, 539
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 5 cut(s) 166, 259, 280, 530, 603
ApaI GGGCCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 407, 662
ApoI RAATTY 3 cut(s) 11, 413, 685
AspS9I GGNCC 2 cut(s) 280, 281
AsuHPI GGTGA 2 cut(s) 503, 897
BaeGI GKGCMC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 284, 321
BbsI GAAGAC 2 cut(s) 524, 957
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 394, 649
BccI CCATC 3 cut(s) 281, 722, 910
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 160, 849
BclI TGATCA 2 cut(s) 208, 222
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 915
BfmI CTRYAG 1 cut(s) 190
BfrI CTTAAG 1 cut(s) 497
BisI GCNGC 4 cut(s) 217, 408, 663, 935
BlsI GCNGC 4 cut(s) 218, 409, 664, 936
Bme1390I CCNGG 2 cut(s) 160, 849
BmgT120I GGNCC 2 cut(s) 280, 281
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 160, 849
BmsI GCATC 3 cut(s) 111, 133, 496
BpiI GAAGAC 2 cut(s) 524, 957
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 305, 386
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 839, 993
Bse3DI GCAATG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 2 cut(s) 160, 849
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 102, 829
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 7 cut(s) 117, 148, 162, 279, 420, 432, 1008
BseNI ACTGG 2 cut(s) 839, 993
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 394, 649
BshFI GGCC 5 cut(s) 168, 261, 282, 532, 605
BsiHKAI GWGCWC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 5 cut(s) 168, 261, 282, 532, 605
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 284, 321
Bsp143I GATC 5 cut(s) 208, 222, 397, 493, 544
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 4 cut(s) 217, 358, 455, 935
BspANI GGCC 5 cut(s) 168, 261, 282, 532, 605
BspCNI CTCAG 7 cut(s) 118, 147, 161, 278, 421, 433, 1009
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 2 cut(s) 405, 539
BspQI GCTCTTC 1 cut(s) 1018
BspTI CTTAAG 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 682
BsrI ACTGG 2 cut(s) 839, 993
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 5 cut(s) 208, 222, 397, 493, 544
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 160, 849
Bst4CI ACNGT 3 cut(s) 173, 912, 963
Bst6I CTCTTC 2 cut(s) 465, 1018
BstAFI CTTAAG 1 cut(s) 497
BstC8I GCNNGC 4 cut(s) 112, 534, 626, 861
BstDEI CTNAG 7 cut(s) 126, 134, 148, 265, 429, 441, 1017
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 102, 829
BstKTI GATC 5 cut(s) 211, 225, 400, 496, 547
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 5 cut(s) 208, 222, 397, 493, 544
BstMWI GCNNNNNNNGC 2 cut(s) 203, 886
BstNI CCWGG 2 cut(s) 160, 849
BstNSI RCATGY 2 cut(s) 184, 863
BstSCI CCNGG 2 cut(s) 158, 847
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 394, 649
BstV2I GAAGAC 2 cut(s) 524, 957
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 5 cut(s) 168, 261, 282, 532, 605
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 2 cut(s) 102, 829
BtsIMutI CAGTG 6 cut(s) 142, 178, 767, 908, 959, 986
Cac8I GCNNGC 4 cut(s) 112, 534, 626, 861
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 631
Cfr13I GGNCC 2 cut(s) 280, 281
CsiI ACCWGGT 1 cut(s) 158
Csp6I GTAC 1 cut(s) 331
CviAII CATG 9 cut(s) 181, 234, 257, 327, 632, 670, 746, 830, 860
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 7 cut(s) 126, 134, 148, 265, 429, 441, 1017
DpnI GATC 5 cut(s) 210, 224, 399, 495, 546
DpnII GATC 5 cut(s) 208, 222, 397, 493, 544
DraIII CACNNNGTG 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 465, 1018
EarI CTCTTC 2 cut(s) 465, 1018
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 2 cut(s) 284, 321
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 105, 743
EcoICRI GAGCTC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 158, 847
EcoT14I CCWWGG 1 cut(s) 326
EcoT22I ATGCAT 2 cut(s) 511, 865
EcoT38I GRGCYC 2 cut(s) 284, 321
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 9 cut(s) 184, 237, 260, 330, 635, 673, 749, 833, 863
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FatI CATG 9 cut(s) 180, 233, 256, 326, 631, 669, 745, 829, 859
FbaI TGATCA 2 cut(s) 208, 222
FblI GTMKAC 3 cut(s) 177, 189, 384
Fnu4HI GCNGC 4 cut(s) 217, 408, 663, 935
FokI GGATG 2 cut(s) 89, 836
FriOI GRGCYC 2 cut(s) 284, 321
Fsp4HI GCNGC 4 cut(s) 217, 408, 663, 935
FspBI CTAG 1 cut(s) 915
GluI GCNGC 4 cut(s) 217, 408, 663, 935
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 5 cut(s) 168, 261, 282, 532, 605
Hin1II CATG 9 cut(s) 184, 237, 260, 330, 635, 673, 749, 833, 863
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 1 cut(s) 782
HphI GGTGA 2 cut(s) 503, 897
Hpy166II GTNNAC 5 cut(s) 178, 190, 385, 594, 986
Hpy188I TCNGA 4 cut(s) 213, 442, 773, 1018
Hpy188III TCNNGA 2 cut(s) 337, 632
Hpy8I GTNNAC 5 cut(s) 178, 190, 385, 594, 986
HpyAV CCTTC 8 cut(s) 257, 263, 613, 767, 900, 948, 986, 1039
HpyCH4III ACNGT 3 cut(s) 173, 912, 963
HpyCH4V TGCA 9 cut(s) 88, 240, 309, 410, 509, 651, 665, 863, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 886
HpyF3I CTNAG 7 cut(s) 126, 134, 148, 265, 429, 441, 1017
Hsp92II CATG 9 cut(s) 184, 237, 260, 330, 635, 673, 749, 833, 863
Ksp22I TGATCA 2 cut(s) 208, 222
Kzo9I GATC 5 cut(s) 208, 222, 397, 493, 544
LguI GCTCTTC 1 cut(s) 1018
Lsp1109I GCAGC 2 cut(s) 394, 649
LweI GCATC 3 cut(s) 111, 133, 496
MabI ACCWGGT 1 cut(s) 158
MaeI CTAG 1 cut(s) 915
MaeIII GTNAC 2 cut(s) 154, 480
MalI GATC 5 cut(s) 210, 224, 399, 495, 546
MboI GATC 5 cut(s) 208, 222, 397, 493, 544
MboII GAAGA 9 cut(s) 111, 482, 529, 598, 915, 918, 936, 957, 1005
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 2 cut(s) 284, 321
MluCI AATT 5 cut(s) 11, 51, 413, 685, 882
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 2 cut(s) 64, 693
Mph1103I ATGCAT 2 cut(s) 511, 865
MseI TTAA 7 cut(s) 8, 417, 498, 795, 803, 854, 999
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 160, 849
MvaI CCWGG 2 cut(s) 160, 849
MwoI GCNNNNNNNGC 2 cut(s) 203, 886
NcoI CCATGG 1 cut(s) 326
NdeII GATC 5 cut(s) 208, 222, 397, 493, 544
NlaIII CATG 9 cut(s) 184, 237, 260, 330, 635, 673, 749, 833, 863
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 2 cut(s) 511, 865
NspI RCATGY 2 cut(s) 184, 863
PaeI GCATGC 1 cut(s) 863
PagI TCATGA 1 cut(s) 631
PceI AGGCCT 1 cut(s) 532
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 1018
PflFI GACNNNGTC 1 cut(s) 160
PkrI GCNGC 4 cut(s) 218, 409, 664, 936
PleI GAGTC 1 cut(s) 790
PpsI GAGTC 1 cut(s) 790
PscI ACATGT 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 158, 847
PspGI CCWGG 2 cut(s) 158, 847
PspN4I GGNNCC 1 cut(s) 282
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 280, 281
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 383
SapI GCTCTTC 1 cut(s) 1018
SaqAI TTAA 7 cut(s) 8, 417, 498, 795, 803, 854, 999
SatI GCNGC 4 cut(s) 217, 408, 663, 935
Sau3AI GATC 5 cut(s) 208, 222, 397, 493, 544
Sau96I GGNCC 2 cut(s) 280, 281
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 2 cut(s) 160, 849
SduI GDGCHC 2 cut(s) 284, 321
SexAI ACCWGGT 1 cut(s) 158
SfaNI GCATC 3 cut(s) 111, 133, 496
SfcI CTRYAG 1 cut(s) 190
SmlI CTYRAG 3 cut(s) 320, 401, 497
SmoI CTYRAG 3 cut(s) 320, 401, 497
SphI GCATGC 1 cut(s) 863
Sse9I AATT 5 cut(s) 11, 51, 413, 685, 882
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 4 cut(s) 217, 358, 455, 935
SspMI CTAG 1 cut(s) 915
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 158, 847
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 173, 912, 963
TaqI TCGA 2 cut(s) 353, 384
TasI AATT 5 cut(s) 11, 51, 413, 685, 882
TauI GCSGC 2 cut(s) 219, 937
Tru1I TTAA 7 cut(s) 8, 417, 498, 795, 803, 854, 999
Tru9I TTAA 7 cut(s) 8, 417, 498, 795, 803, 854, 999
TscAI CASTG 6 cut(s) 142, 178, 767, 915, 966, 993
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 407, 662
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 6 cut(s) 245, 620, 648, 734, 779, 930
TspRI CASTG 6 cut(s) 142, 178, 767, 915, 966, 993
Tth111I GACNNNGTC 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 497
XapI RAATTY 3 cut(s) 11, 413, 685
XceI RCATGY 2 cut(s) 184, 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 333, 977
XmiI GTMKAC 3 cut(s) 177, 189, 384
XspI CTAG 1 cut(s) 915
Zsp2I ATGCAT 2 cut(s) 511, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.