Rroxscaffold_3G00263020

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015623
Physical Location & Seq
Forward (+)
56960773 .. 56962081
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263020.1

Sequence Viewer

Length: 1116 bp
ATGCAAGACCACATTGGCATCCCTGCTTGCTTTTCTTCAGCTGAGAAGCTCAGTGATGATGCCTCAGCTGTGACCAGGTCAGGCCACAGTGTCTACATGTCAGTCTACAGAGCCAAGATTGCTGATCAGAGCCGCCTGATCACAATCACATGGTGCAAAAACCTTCTCCTTCATGGCCTCTCAGTCTCTGTGGAGGGCCCAGATGGAGAGAACCACCATTCCTGCAAAGTTGAGCTCAAGCCATGGTACTTCTGGAGAAAACAAGGCTCGAAGCGGTTTGCGGTCAATGGGAAAACGGTCGACATTTTCTGGGATCTCAAGGCTGCAAAATTTAATGGTGGAACTGAGCCAAAGTCTGAGTATTATGTTGCAGTTGTCTGTGAGGAAGAGGTTGTGTTACTTCTCGGTGATCTTAAGAAAGATGCATATAAGAAGACAGGGTTTAGGCCTGCTTTGATTGATCCCATTTTGGTTTCTAAAAAAGAACACATCTTTGGCAAGAAGAAGTTTACCACAAAGGCCAAGTTTTATGAGAAGGGCAGGCTTCATGAAATCTCTATTGAGTGCAAGAATAGAGCTGCAAACATGGGCAATGTTGGGAATTCAGTTGAGCCAGAGTTGGAGATTAGAGTAGATGGGCATTTGGTGGTTCATGTCAAACACCTTCAGTGGAAGTTCAGAGGTAATGAGTCTATTCATATTAACAAGTTAAGAATAGAGGTGTATTGGGATGTCCATGACTGGTTGTTTAGTCCTGGCTTAAGGCATGCATTGTTTATTTTCAAGCCAATTTTGCCTTCCACATCTCTATCACCACTGTCTAGGTCATCTTCTTCTTCGCCGCCTTCATCTTCCCTGTCATCGACACTGTCTTCCCAGACAAGTTGTGGTTCACTAGAAGGGCTTAATGCAAGTGGCTCTTCTGAGTTTTGCTTGTTTCTTTATGCTTGGAAGGTTGAGCCAATGAAAAGGGTCATCAAGAAATGGGAGATGCGACATCATGGAATGGTGAAGATGCATGTTGGATTGAGAAGGAAGTGGGACCCAAGAAAGGTTGGGGAGTTAGTTACAGCTGGGAATGAGAAAATGGGCATATTGGACAAAGACAGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

371

Amino Acids

41.97

Weight (kDa)

9.43

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 28 - 318 2e-108 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06390
malus_domestica MD06G1165100.v1.1 MD14G1170600.v1.1
prunus_persica Prupe.5G164700_v2.0.a1
pyrus_communis pycom06g14760 pycom14g14240
rosa_chinensis RchiOBHm_Chr7g0192421
rosa_laevigata RLG00000004369
rosa_multiflora Rmu_sc0003108.1_g000024
rosa_roxburghii Rroxscaffold_3G00263020
rosa_rugosa Rorug07G0001500
rosa_samantha Rh7AG125300 Rh7BG127600 Rh7CG129300 Rh7DG129400
rosa_wichuraiana Rw7G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 93, 105, 300
AciI CCGC 4 cut(s) 133, 274, 281, 842
AclWI GGATC 2 cut(s) 321, 455
AcsI RAATTY 2 cut(s) 329, 601
AcuI CTGAAG 2 cut(s) 21, 650
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 1051
AflII CTTAAG 2 cut(s) 413, 760
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 784
AjnI CCWGG 2 cut(s) 74, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 477, 509, 781, 813
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 6 cut(s) 41, 49, 68, 235, 578, 1073
AluI AGCT 6 cut(s) 41, 49, 68, 235, 578, 1073
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 321, 455
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 5 cut(s) 82, 175, 196, 446, 519
ApaI GGGCCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 323, 578
ApoI RAATTY 2 cut(s) 329, 601
AspS9I GGNCC 3 cut(s) 196, 197, 1042
AsuHPI GGTGA 3 cut(s) 419, 804, 1021
AvaII GGWCC 1 cut(s) 1042
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 200, 237
BbsI GAAGAC 2 cut(s) 440, 864
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 310, 565
BccI CCATC 2 cut(s) 197, 629
BciT130I CCWGG 2 cut(s) 76, 756
BclI TGATCA 2 cut(s) 124, 138
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 822, 896
BfmI CTRYAG 1 cut(s) 106
BfrI CTTAAG 2 cut(s) 413, 760
BisI GCNGC 4 cut(s) 133, 324, 579, 842
BlsI GCNGC 4 cut(s) 134, 325, 580, 843
Bme1390I CCNGG 2 cut(s) 76, 756
Bme18I GGWCC 1 cut(s) 1042
BmgT120I GGNCC 3 cut(s) 196, 197, 1042
BmiI GGNNCC 3 cut(s) 198, 1043, 1044
BmrFI CCNGG 2 cut(s) 76, 756
BmsI GCATC 5 cut(s) 27, 49, 412, 981, 1005
BpiI GAAGAC 2 cut(s) 440, 864
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 221, 302
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 1051
Bse1I ACTGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 76, 756
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 18, 736
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 1051
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 7 cut(s) 33, 64, 78, 195, 336, 348, 915
BseNI ACTGG 1 cut(s) 746
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 2 cut(s) 310, 565
BseYI CCCAGC 1 cut(s) 1073
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 5 cut(s) 84, 177, 198, 448, 521
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 1055
BslI CCNNNNNNNGG 1 cut(s) 1051
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 1055
BsnI GGCC 5 cut(s) 84, 177, 198, 448, 521
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 200, 237
Bsp143I GATC 5 cut(s) 124, 138, 313, 409, 460
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 4 cut(s) 133, 274, 281, 842
BspANI GGCC 5 cut(s) 84, 177, 198, 448, 521
BspCNI CTCAG 7 cut(s) 34, 63, 77, 194, 337, 349, 916
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 198, 1043, 1044
BspPI GGATC 2 cut(s) 321, 455
BspQI GCTCTTC 1 cut(s) 925
BspTI CTTAAG 2 cut(s) 413, 760
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 5 cut(s) 124, 138, 313, 409, 460
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 76, 756
Bst4CI ACNGT 4 cut(s) 89, 298, 819, 870
Bst6I CTCTTC 2 cut(s) 381, 925
BstAFI CTTAAG 2 cut(s) 413, 760
BstC8I GCNNGC 4 cut(s) 28, 450, 542, 768
BstDEI CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 924
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 18, 736
BstKTI GATC 5 cut(s) 127, 141, 316, 412, 463
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 5 cut(s) 124, 138, 313, 409, 460
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 119, 793
BstNI CCWGG 2 cut(s) 76, 756
BstNSI RCATGY 3 cut(s) 100, 770, 1022
BstSCI CCNGG 2 cut(s) 74, 754
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 310, 565
BstV2I GAAGAC 2 cut(s) 440, 864
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 5 cut(s) 84, 177, 198, 448, 521
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 18, 736
BtsIMutI CAGTG 5 cut(s) 58, 94, 674, 815, 866
Cac8I GCNNGC 4 cut(s) 28, 450, 542, 768
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 3 cut(s) 196, 197, 1042
CsiI ACCWGGT 1 cut(s) 74
Csp6I GTAC 1 cut(s) 247
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 924
DpnI GATC 5 cut(s) 126, 140, 315, 411, 462
DpnII GATC 5 cut(s) 124, 138, 313, 409, 460
DraIII CACNNNGTG 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 381, 925
EarI CTCTTC 2 cut(s) 381, 925
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 200, 237
Eco47I GGWCC 1 cut(s) 1042
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 21, 650
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 196, 1042
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 74, 754
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 3 cut(s) 427, 772, 1020
EcoT38I GRGCYC 2 cut(s) 200, 237
ErhI CCWWGG 1 cut(s) 242
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 1 cut(s) 1055
FbaI TGATCA 2 cut(s) 124, 138
FblI GTMKAC 3 cut(s) 93, 105, 300
Fnu4HI GCNGC 4 cut(s) 133, 324, 579, 842
FokI GGATG 2 cut(s) 5, 743
FriOI GRGCYC 2 cut(s) 200, 237
Fsp4HI GCNGC 4 cut(s) 133, 324, 579, 842
FspBI CTAG 2 cut(s) 822, 896
GluI GCNGC 4 cut(s) 133, 324, 579, 842
GsaI CCCAGC 1 cut(s) 1077
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 5 cut(s) 84, 177, 198, 448, 521
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 689
HphI GGTGA 3 cut(s) 419, 804, 1021
Hpy166II GTNNAC 5 cut(s) 94, 106, 301, 510, 893
Hpy188I TCNGA 4 cut(s) 129, 358, 680, 925
Hpy188III TCNNGA 3 cut(s) 253, 548, 979
Hpy8I GTNNAC 5 cut(s) 94, 106, 301, 510, 893
HpyAV CCTTC 9 cut(s) 173, 179, 529, 674, 807, 855, 893, 946, 1026
HpyCH4III ACNGT 4 cut(s) 89, 298, 819, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 793
HpyF3I CTNAG 7 cut(s) 42, 50, 64, 181, 345, 357, 924
KflI GGGWCCC 1 cut(s) 1042
Ksp22I TGATCA 2 cut(s) 124, 138
Kzo9I GATC 5 cut(s) 124, 138, 313, 409, 460
LguI GCTCTTC 1 cut(s) 925
Lsp1109I GCAGC 2 cut(s) 310, 565
LweI GCATC 5 cut(s) 27, 49, 412, 981, 1005
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 2 cut(s) 822, 896
MaeIII GTNAC 3 cut(s) 70, 396, 1066
MalI GATC 5 cut(s) 126, 140, 315, 411, 462
MboI GATC 5 cut(s) 124, 138, 313, 409, 460
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 200, 237
MluCI AATT 3 cut(s) 329, 601, 789
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 2 cut(s) 600, 1003
MnlI CCTC 7 cut(s) 73, 187, 188, 376, 382, 674, 712
Mph1103I ATGCAT 3 cut(s) 427, 772, 1020
MseI TTAA 6 cut(s) 333, 414, 702, 710, 761, 906
MspA1I CMGCKG 3 cut(s) 41, 68, 1073
MspCI CTTAAG 2 cut(s) 413, 760
MspR9I CCNGG 2 cut(s) 76, 756
MvaI CCWGG 2 cut(s) 76, 756
MwoI GCNNNNNNNGC 2 cut(s) 119, 793
NcoI CCATGG 1 cut(s) 242
NdeII GATC 5 cut(s) 124, 138, 313, 409, 460
NlaIV GGNNCC 3 cut(s) 198, 1043, 1044
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 3 cut(s) 427, 772, 1020
NspI RCATGY 3 cut(s) 100, 770, 1022
PaeI GCATGC 1 cut(s) 770
PagI TCATGA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 448
PciI ACATGT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 925
PflFI GACNNNGTC 2 cut(s) 76, 868
PkrI GCNGC 4 cut(s) 134, 325, 580, 843
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PpuMI RGGWCCY 1 cut(s) 1042
PscI ACATGT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 1042
Psp6I CCWGG 2 cut(s) 74, 754
PspFI CCCAGC 1 cut(s) 1073
PspGI CCWGG 2 cut(s) 74, 754
PspN4I GGNNCC 3 cut(s) 198, 1043, 1044
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 3 cut(s) 196, 197, 1042
PspPPI RGGWCCY 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 2 cut(s) 76, 868
PvuII CAGCTG 3 cut(s) 41, 68, 1073
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 925
SaqAI TTAA 6 cut(s) 333, 414, 702, 710, 761, 906
SatI GCNGC 4 cut(s) 133, 324, 579, 842
Sau3AI GATC 5 cut(s) 124, 138, 313, 409, 460
Sau96I GGNCC 3 cut(s) 196, 197, 1042
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 2 cut(s) 76, 756
SduI GDGCHC 2 cut(s) 200, 237
SexAI ACCWGGT 1 cut(s) 74
SfaNI GCATC 5 cut(s) 27, 49, 412, 981, 1005
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 1042
SmlI CTYRAG 4 cut(s) 236, 317, 413, 760
SmoI CTYRAG 4 cut(s) 236, 317, 413, 760
SphI GCATGC 1 cut(s) 770
Sse9I AATT 3 cut(s) 329, 601, 789
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 4 cut(s) 133, 274, 281, 842
SspMI CTAG 2 cut(s) 822, 896
SstI GAGCTC 1 cut(s) 237
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 2 cut(s) 74, 754
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 89, 298, 819, 870
TaqI TCGA 3 cut(s) 269, 300, 863
TasI AATT 3 cut(s) 329, 601, 789
TauI GCSGC 2 cut(s) 135, 844
Tru1I TTAA 6 cut(s) 333, 414, 702, 710, 761, 906
Tru9I TTAA 6 cut(s) 333, 414, 702, 710, 761, 906
TscAI CASTG 5 cut(s) 58, 94, 674, 822, 873
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 323, 578
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 7 cut(s) 161, 536, 564, 641, 686, 837, 980
TspRI CASTG 5 cut(s) 58, 94, 674, 822, 873
Tth111I GACNNNGTC 2 cut(s) 76, 868
Vha464I CTTAAG 2 cut(s) 413, 760
VpaK11BI GGWCC 1 cut(s) 1042
XapI RAATTY 2 cut(s) 329, 601
XceI RCATGY 3 cut(s) 100, 770, 1022
XcmI CCANNNNNNNNNTGG 2 cut(s) 249, 884
XmiI GTMKAC 3 cut(s) 93, 105, 300
XspI CTAG 2 cut(s) 822, 896
Zsp2I ATGCAT 3 cut(s) 427, 772, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.