FvH4_5g09010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014047
Physical Location & Seq
Forward (+)
5209580 .. 5211234
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09010.t1

Sequence Viewer

Length: 861 bp
ATGGGGGGCCATAACTCAAAGCTCACCCCAGAAGCCGAAGCCATGCCTCCTAAAATACGTCCACTCCTACAGTGGAAGTATGAGGAGATCAAAGCCCGGATAAGGGCAAGAAAACTAAAAACTGATGCTGCACCCTCCAAGAAACAACTACTTAAGCCTGAAGATAATGAAGAGGAGGAGGATACCTCTGTGTTTCAATCGTTACAATCTTCACCTGATCATAGTGTAACATCTCCAAAGGTACAAACAGTACCGGAGAAGAAGAGTTCAAAGGTTGCACCAGTTTTGGTAGATCATGATGAGATTAAGGACCAAAAAAAGGAGGAAAATAAACCAGACAACAGCATTAAAGAAAATAAAGAGAAAGAAAGTGGGAAAGCGGCAAAGGTTGTGCCTGTGTACATAGGAGGGGTTTTTGCATTGGAGCAAGCCACAGATGGAGAGGAAGAGAATGAAGATCAAGAAGATATGAGGAGTATCAACTACGAAATGTGGGATTCATCGCCAAGTTTCCGAGTTTATTGCCAAGATGAACCAATGGAATTTGAGAAAGAATTGGAAAAGCAAACTGACAAGGATGCAAGTAAAGATGACAACATTAACAGCAGAAATGAGGAAAAGAACCACCAAAAAACGCCAAGTGCCAACAGCAGTGTTGATAGCATACCTGATAACAATGACCAGGACACCAAAACAAAGAAGAAATCAAGGAGAAGAAGAATGAAAATTCCATTCCATATGGGAGGAGCAGCAGACTGTTCTGTAAAGAATCTGTTGAATGTTAGAGGTTGCGCTGGCGCTGGAGCTGGCCACGACAGAGACATCCTTCTTGATGAGAAATCTGCAGCGACGGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.12

Weight (kDa)

5.49

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 808
AcsI RAATTY 2 cut(s) 542, 726
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 3 cut(s) 243, 252, 401
AfiI CCNNNNNNNGG 3 cut(s) 102, 103, 319
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 197, 270, 778
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 2 cut(s) 22, 806
AluI AGCT 2 cut(s) 22, 806
Alw26I GTCTC 1 cut(s) 813
AoxI GGCC 2 cut(s) 7, 808
ApeKI GCWGC 3 cut(s) 128, 749, 845
ApoI RAATTY 2 cut(s) 542, 726
AspLEI GCGC 2 cut(s) 794, 800
AspS9I GGNCC 2 cut(s) 7, 310
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 16, 204
AvaII GGWCC 1 cut(s) 310
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BalI TGGCCA 1 cut(s) 810
BbvI GCAGC 3 cut(s) 115, 761, 857
BccI CCATC 1 cut(s) 431
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 1 cut(s) 683
BciVI GTATCC 1 cut(s) 175
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 813
BfmI CTRYAG 2 cut(s) 68, 843
BfoI RGCGCY 1 cut(s) 801
BfrI CTTAAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 4 cut(s) 129, 381, 750, 846
BlsI GCNGC 4 cut(s) 130, 382, 751, 847
Bme1390I CCNGG 2 cut(s) 97, 683
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 7, 310
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 97, 683
BmsI GCATC 2 cut(s) 115, 568
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 103, 319
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 683
BseGI GGATG 2 cut(s) 583, 822
BseLI CCNNNNNNNGG 3 cut(s) 102, 103, 319
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 5 cut(s) 98, 188, 191, 487, 759
BseXI GCAGC 3 cut(s) 115, 761, 857
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 2 cut(s) 9, 810
BsiSI CCGG 2 cut(s) 97, 254
BslI CCNNNNNNNGG 3 cut(s) 102, 103, 319
BsmAI GTCTC 1 cut(s) 813
BsnI GGCC 2 cut(s) 9, 810
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 4 cut(s) 87, 217, 292, 457
BspACI CCGC 1 cut(s) 380
BspANI GGCC 2 cut(s) 9, 810
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 847
BspTI CTTAAG 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 1 cut(s) 281
BssMI GATC 4 cut(s) 87, 217, 292, 457
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 3 cut(s) 72, 250, 758
Bst6I CTCTTC 3 cut(s) 165, 257, 441
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 429, 796, 808
BstF5I GGATG 2 cut(s) 583, 822
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 2 cut(s) 794, 800
BstKTI GATC 4 cut(s) 90, 220, 295, 460
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 4 cut(s) 87, 217, 292, 457
BstNI CCWGG 1 cut(s) 683
BstSCI CCNGG 2 cut(s) 95, 681
BstSFI CTRYAG 2 cut(s) 68, 843
BstV1I GCAGC 3 cut(s) 115, 761, 857
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 9, 810
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 583, 822
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 77, 658
Cac8I GCNNGC 3 cut(s) 429, 796, 808
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 794, 800
Cfr13I GGNCC 2 cut(s) 7, 310
Csp6I GTAC 3 cut(s) 242, 251, 400
CviAII CATG 2 cut(s) 43, 296
CviJI RGCY 9 cut(s) 9, 22, 35, 41, 95, 157, 431, 806, 810
CviKI_1 RGCY 9 cut(s) 9, 22, 35, 41, 95, 157, 431, 806, 810
CviQI GTAC 3 cut(s) 242, 251, 400
DpnI GATC 4 cut(s) 89, 219, 294, 459
DpnII GATC 4 cut(s) 87, 217, 292, 457
EaeI YGGCCR 1 cut(s) 808
Eam1104I CTCTTC 3 cut(s) 165, 257, 441
EarI CTCTTC 3 cut(s) 165, 257, 441
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 681
FaeI CATG 2 cut(s) 46, 299
FatI CATG 2 cut(s) 42, 295
FauNDI CATATG 1 cut(s) 738
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 129, 381, 750, 846
FokI GGATG 2 cut(s) 590, 809
Fsp4HI GCNGC 4 cut(s) 129, 381, 750, 846
GlaI GCGC 2 cut(s) 793, 799
GluI GCNGC 4 cut(s) 129, 381, 750, 846
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 2 cut(s) 9, 810
HapII CCGG 2 cut(s) 97, 254
HhaI GCGC 2 cut(s) 794, 800
Hin1II CATG 2 cut(s) 46, 299
Hin6I GCGC 2 cut(s) 792, 798
HinP1I GCGC 2 cut(s) 792, 798
HinfI GANTC 2 cut(s) 497, 769
HpaII CCGG 2 cut(s) 97, 254
HphI GGTGA 2 cut(s) 16, 204
Hpy166II GTNNAC 2 cut(s) 62, 400
Hpy188I TCNGA 1 cut(s) 515
Hpy188III TCNNGA 3 cut(s) 296, 461, 830
Hpy8I GTNNAC 2 cut(s) 62, 400
Hpy99I CGWCG 1 cut(s) 853
HpyAV CCTTC 1 cut(s) 836
HpyCH4III ACNGT 3 cut(s) 72, 250, 758
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 5 cut(s) 131, 278, 419, 581, 845
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 46, 299
HspAI GCGC 2 cut(s) 792, 798
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 4 cut(s) 87, 217, 292, 457
LmnI GCTCC 3 cut(s) 424, 746, 803
Lsp1109I GCAGC 3 cut(s) 115, 761, 857
LweI GCATC 2 cut(s) 115, 568
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 201, 226
MalI GATC 4 cut(s) 89, 219, 294, 459
MboI GATC 4 cut(s) 87, 217, 292, 457
MlsI TGGCCA 1 cut(s) 810
MluCI AATT 3 cut(s) 542, 554, 726
MluNI TGGCCA 1 cut(s) 810
Mox20I TGGCCA 1 cut(s) 810
MscI TGGCCA 1 cut(s) 810
MseI TTAA 4 cut(s) 153, 306, 348, 600
Msp20I TGGCCA 1 cut(s) 810
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 254
MspR9I CCNGG 2 cut(s) 97, 683
MvaI CCWGG 1 cut(s) 683
NciI CCSGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 738
NdeII GATC 4 cut(s) 87, 217, 292, 457
NlaIII CATG 2 cut(s) 46, 299
NlaIV GGNNCC 1 cut(s) 8
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 2 cut(s) 497, 769
PkrI GCNGC 4 cut(s) 130, 382, 751, 847
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 7, 310
PstI CTGCAG 1 cut(s) 847
RsaI GTAC 3 cut(s) 243, 252, 401
RsaNI GTAC 3 cut(s) 242, 251, 400
SaqAI TTAA 4 cut(s) 153, 306, 348, 600
SatI GCNGC 4 cut(s) 129, 381, 750, 846
Sau3AI GATC 4 cut(s) 87, 217, 292, 457
Sau96I GGNCC 2 cut(s) 7, 310
ScrFI CCNGG 2 cut(s) 97, 683
SfaNI GCATC 2 cut(s) 115, 568
SfcI CTRYAG 2 cut(s) 68, 843
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 542, 554, 726
SsiI CCGC 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 95, 681
TaaI ACNGT 3 cut(s) 72, 250, 758
TaiI ACGT 1 cut(s) 61
TasI AATT 3 cut(s) 542, 554, 726
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 497, 769
Tru1I TTAA 4 cut(s) 153, 306, 348, 600
Tru9I TTAA 4 cut(s) 153, 306, 348, 600
TscAI CASTG 2 cut(s) 77, 658
TseI GCWGC 3 cut(s) 128, 749, 845
TspDTI ATGAA 5 cut(s) 183, 468, 489, 546, 737
TspRI CASTG 2 cut(s) 77, 658
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 542, 726
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.