MD14G1150800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014047
Physical Location & Seq
Reverse (-)
24393964 .. 24395176
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1150800.v1.1.491

Sequence Viewer

Length: 840 bp
ATGGGTGGCCAAAATTCAAAGCTCACACCAGAAGCCGAGGCTGTGCCTCCTCGAATCCGTTCCCTCTTGCAGAGGCGCTTCGAGGAGATGAAGAGCCGGTCCAAGGCACGAAAGCTAAAAGCCGCTAGTACTCTCTCCAAGAAACAGCTACTTAAGGACGGTGATCAGGAGGAGGTTGATAACTCTCTCCCTCATTCGCTGCGGTCATCCCCAGAGTCCGACAAAATAACACGTCCGAAGATACCACCAACATTGGAGAACAAGTCCAAGGTTGCACCAATATCGCCGGAGCATGACAAAGGCACAAAACAGGCTGATGATGAGAACCAAAACAAGGAGCAGATCAAGACAGATGGGACGGAATGTAGCGTTGAAGATCATAAGGAACCAAAGGGTGTGAATGTGTACGTAGGAGGGGTTTTTGCAATGGAGGACACCACAGAGGGAGAGGAAGAGGACGAAGATAATGAAGGTGGTATTAGAACAAACAGCGAATTTTTTATGTGTCCCGCGTCACCAAGTTTTAGAGTTTATTGCATGGAAGCTCTGGAAATTGAAAATGATAGCAGCAAGTATGACAGCACTACAGATGAGGATTTCAAGCACAAGAAGTCGCCAAGTGCTGCGTCTGCAGACAGCAATGTTGATAGCGTAGCGTCAATGACTGATCACCATGATGGCCAGGTAACAAAGACAAAGAAGAAAGGAAGGAGAAGGAGAAGAGTGAAAAATGGATTCGGCGTAAAGAATCTATTGAACATTAAAGGATGCTACTACCCAGGTTGCAGTGGTGGCCACGACAGAGCCACCTATCTGGCCGAGAAATCTGCAGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

30.9

Weight (kDa)

6.42

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 512
AciI CCGC 3 cut(s) 123, 202, 510
AcoI YGGCCR 4 cut(s) 7, 679, 793, 816
AcsI RAATTY 2 cut(s) 13, 494
AfaI GTAC 2 cut(s) 130, 407
AfiI CCNNNNNNNGG 2 cut(s) 103, 334
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 5 cut(s) 18, 374, 557, 601, 757
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 2 cut(s) 681, 778
AluBI AGCT 4 cut(s) 22, 115, 148, 545
AluI AGCT 4 cut(s) 22, 115, 148, 545
AoxI GGCC 4 cut(s) 7, 679, 793, 816
ApeKI GCWGC 4 cut(s) 199, 567, 623, 830
ApoI RAATTY 2 cut(s) 13, 494
Asp700I GAANNNNTTC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 173, 507, 662
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 3 cut(s) 9, 681, 795
BbvI GCAGC 3 cut(s) 186, 579, 610
BccI CCATC 2 cut(s) 347, 671
BcgI CGANNNNNNTGC 3 cut(s) 264, 298, 809
BciT130I CCWGG 2 cut(s) 683, 780
BclI TGATCA 2 cut(s) 163, 667
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 3 cut(s) 585, 630, 828
BfoI RGCGCY 1 cut(s) 79
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 5 cut(s) 123, 200, 568, 624, 831
BlsI GCNGC 5 cut(s) 124, 201, 569, 625, 832
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 683, 780
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 2 cut(s) 683, 780
BmsI GCATC 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 409
BsaJI CCNNGG 4 cut(s) 36, 102, 267, 778
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 334
Bse118I RCCGGY 1 cut(s) 96
Bse3DI GCAATG 2 cut(s) 432, 646
BseBI CCWGG 2 cut(s) 683, 780
BseDI CCNNGG 4 cut(s) 36, 102, 267, 778
BseGI GGATG 2 cut(s) 206, 773
BseLI CCNNNNNNNGG 2 cut(s) 103, 334
BseMI GCAATG 2 cut(s) 432, 646
BseRI GAGGAG 3 cut(s) 39, 98, 185
BseXI GCAGC 3 cut(s) 186, 579, 610
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 4 cut(s) 9, 681, 795, 818
BsiSI CCGG 2 cut(s) 97, 287
BslFI GGGAC 2 cut(s) 370, 492
BslI CCNNNNNNNGG 2 cut(s) 103, 334
BsmFI GGGAC 2 cut(s) 370, 492
BsnI GGCC 4 cut(s) 9, 681, 795, 818
Bsp143I GATC 4 cut(s) 163, 342, 376, 667
BspACI CCGC 3 cut(s) 123, 202, 510
BspANI GGCC 4 cut(s) 9, 681, 795, 818
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 2 cut(s) 634, 832
BspQI GCTCTTC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 432, 646
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 4 cut(s) 36, 102, 267, 778
BssMI GATC 4 cut(s) 163, 342, 376, 667
BssT1I CCWWGG 2 cut(s) 102, 267
Bst2UI CCWGG 2 cut(s) 683, 780
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 3 cut(s) 86, 447, 715
BstAFI CTTAAG 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 409
BstF5I GGATG 2 cut(s) 206, 773
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 4 cut(s) 166, 345, 379, 670
BstMBI GATC 4 cut(s) 163, 342, 376, 667
BstMWI GCNNNNNNNGC 2 cut(s) 629, 792
BstNI CCWGG 2 cut(s) 683, 780
BstSCI CCNGG 2 cut(s) 681, 778
BstSFI CTRYAG 3 cut(s) 585, 630, 828
BstSNI TACGTA 1 cut(s) 409
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 186, 579, 610
BstXI CCANNNNNNTGG 1 cut(s) 814
BsuRI GGCC 4 cut(s) 9, 681, 795, 818
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 206, 773
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 793
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 3 cut(s) 501, 615, 645
Csp6I GTAC 2 cut(s) 129, 406
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 3 cut(s) 293, 538, 674
CviQI GTAC 2 cut(s) 129, 406
DpnI GATC 4 cut(s) 165, 344, 378, 669
DpnII GATC 4 cut(s) 163, 342, 376, 667
EaeI YGGCCR 4 cut(s) 7, 679, 793, 816
Eam1104I CTCTTC 3 cut(s) 86, 447, 715
EarI CTCTTC 3 cut(s) 86, 447, 715
Eco105I TACGTA 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 102, 267
Eco47I GGWCC 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 681, 778
EcoT14I CCWWGG 2 cut(s) 102, 267
ErhI CCWWGG 2 cut(s) 102, 267
FaeI CATG 3 cut(s) 296, 541, 677
FaiI YATR 6 cut(s) 294, 381, 503, 539, 576, 675
FaqI GGGAC 2 cut(s) 370, 492
FatI CATG 3 cut(s) 292, 537, 673
FauI CCCGC 1 cut(s) 517
FbaI TGATCA 2 cut(s) 163, 667
Fnu4HI GCNGC 5 cut(s) 123, 200, 568, 624, 831
FokI GGATG 2 cut(s) 193, 780
Fsp4HI GCNGC 5 cut(s) 123, 200, 568, 624, 831
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 77
GluI GCNGC 5 cut(s) 123, 200, 568, 624, 831
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 4 cut(s) 9, 681, 795, 818
HapII CCGG 2 cut(s) 97, 287
HgaI GACGC 3 cut(s) 501, 615, 645
HhaI GCGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 296, 541, 677
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 4 cut(s) 54, 215, 735, 748
HpaII CCGG 2 cut(s) 97, 287
HphI GGTGA 3 cut(s) 173, 507, 662
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 220, 237
Hpy188III TCNNGA 3 cut(s) 167, 346, 548
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 3 cut(s) 464, 702, 708
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 232, 408
HpyCH4V TGCA 7 cut(s) 70, 275, 425, 537, 632, 786, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 792
HpySE526I ACGT 2 cut(s) 232, 408
Hsp92II CATG 3 cut(s) 296, 541, 677
HspAI GCGC 1 cut(s) 76
Ksp22I TGATCA 2 cut(s) 163, 667
Kzo9I GATC 4 cut(s) 163, 342, 376, 667
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 289, 337
Lsp1109I GCAGC 3 cut(s) 186, 579, 610
LweI GCATC 1 cut(s) 758
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 232, 408
MaeIII GTNAC 2 cut(s) 513, 685
MalI GATC 4 cut(s) 165, 344, 378, 669
MboI GATC 4 cut(s) 163, 342, 376, 667
MboII GAAGA 7 cut(s) 103, 250, 386, 464, 473, 712, 732
MlsI TGGCCA 3 cut(s) 9, 681, 795
MluCI AATT 3 cut(s) 13, 494, 552
MluNI TGGCCA 3 cut(s) 9, 681, 795
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 243
Mox20I TGGCCA 3 cut(s) 9, 681, 795
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 3 cut(s) 9, 681, 795
MseI TTAA 2 cut(s) 153, 762
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 3 cut(s) 9, 681, 795
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 287
MspR9I CCNGG 2 cut(s) 683, 780
MvaI CCWGG 2 cut(s) 683, 780
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 629, 792
NdeII GATC 4 cut(s) 163, 342, 376, 667
NlaIII CATG 3 cut(s) 296, 541, 677
NlaIV GGNNCC 1 cut(s) 387
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 54, 735, 748
PkrI GCNGC 5 cut(s) 124, 201, 569, 625, 832
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Ppu21I YACGTR 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 681, 778
PspGI CCWGG 2 cut(s) 681, 778
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 2 cut(s) 634, 832
RsaI GTAC 2 cut(s) 130, 407
RsaNI GTAC 2 cut(s) 129, 406
RseI CAYNNNNRTG 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 153, 762
SatI GCNGC 5 cut(s) 123, 200, 568, 624, 831
Sau3AI GATC 4 cut(s) 163, 342, 376, 667
Sau96I GGNCC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 683, 780
SfaNI GCATC 1 cut(s) 758
SfcI CTRYAG 3 cut(s) 585, 630, 828
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 409
Sse9I AATT 3 cut(s) 13, 494, 552
SsiI CCGC 3 cut(s) 123, 202, 510
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 681, 778
StyI CCWWGG 2 cut(s) 102, 267
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 235, 411
TaqI TCGA 2 cut(s) 52, 81
TasI AATT 3 cut(s) 13, 494, 552
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 54, 735, 748
Tru1I TTAA 2 cut(s) 153, 762
Tru9I TTAA 2 cut(s) 153, 762
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 4 cut(s) 199, 567, 623, 830
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 2 cut(s) 104, 483
TspGWI ACGGA 2 cut(s) 47, 374
TspRI CASTG 1 cut(s) 793
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 2 cut(s) 13, 494
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.