Prupe.5G146000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014047
Physical Location & Seq
Reverse (-)
13429043 .. 13430843
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G146000.1

Sequence Viewer

Length: 828 bp
ATGGGTGGCCAAAACTCAAAGCTCACCCCAGAAGGTGAAGCTGTGCCTCCTCGAATTCGTTCACTCTTGCAGAGAAAATTTGAGGAGATCCGAGGCCGGACAAAGGCAAAAAAACTAAAAGCCTCCCACACTTTCTCCAAGAAACAGCTACTTAAGGATGGTGAACAGGAAGAGGTAGATATCTCTGTGCCTCATTCGCTGCAGTCTTCACCAGAGTTTGAAAATTTACCATCTCCTAAAACACCACAAACATTGGAGTTGTTACCAAGATTGCCAGAGCTTGACAGAAGAGCAAAACAGTCTGATGAGGACCAGATCAGGAGAGATGGGGCGGAGTTTAGTGTGGAAGATGATAAAGAGGCCAAGGGGGTGAATGTGTATATAGGGGGGGTTTTTGCAATGGGGGAAACCACAGAGGGGGAGGAAGAGGAAGAGGATGAAGTTAATGATGCGGGCATGCAACGGAACAGCAAAATCCATCTGTGTCCGGCGTCACCAAGTTTCAGAGTTTATTGCATGGAACCTCTGGAAATAGAAAATGATGACAGTAAGGACGACATCACAGATGAGGATTTCAAGCATAAGAAATCACCAAGTGCTGAGTCTGCTGACAGCAGTGTTGATAGCGTAAGGTCGATGATTGAAACCAATGATGTCCAGGACACAAAGACAAAACAGAAAGGAAGGAGAAGAAGAAGAATAAAAAATGCACTCAGACCAAACACTGTAAAGAATCTATTGAACGTTAAGGGATGCTACTACGCAGGTTGCACTGGTGGCCACGACAGAACCACCTATGTAGCTGCTAAGAAATCTGCAGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.81

Weight (kDa)

5.89

Isoelectric Point (pI)

70.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 755
AciI CCGC 2 cut(s) 332, 452
AclI AACGTT 1 cut(s) 744
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 2 cut(s) 7, 778
AcsI RAATTY 3 cut(s) 54, 77, 223
AcyI GRCGYC 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 103, 417
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 221, 577, 644, 742
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 5 cut(s) 22, 41, 148, 280, 803
AluI AGCT 5 cut(s) 22, 41, 148, 280, 803
AlwI GGATC 1 cut(s) 82
AoxI GGCC 4 cut(s) 7, 94, 360, 778
ApeKI GCWGC 3 cut(s) 199, 803, 818
ApoI RAATTY 3 cut(s) 54, 77, 223
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 7 cut(s) 16, 47, 173, 201, 382, 486, 582
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 2 cut(s) 9, 780
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 186, 790
BccI CCATC 4 cut(s) 152, 238, 320, 486
BciT130I CCWGG 1 cut(s) 659
BfmI CTRYAG 2 cut(s) 200, 816
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 755
BisI GCNGC 3 cut(s) 200, 804, 819
BlsI GCNGC 3 cut(s) 201, 805, 820
Bme1390I CCNGG 1 cut(s) 659
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 2 cut(s) 439, 743
BpiI GAAGAC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 91, 363
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 417
Bse1I ACTGG 1 cut(s) 778
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 91, 363
BseGI GGATG 3 cut(s) 163, 442, 758
BseLI CCNNNNNNNGG 2 cut(s) 103, 417
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 591, 727
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 2 cut(s) 39, 98
BseXI GCAGC 2 cut(s) 186, 790
BshFI GGCC 4 cut(s) 9, 96, 362, 780
BsiSI CCGG 2 cut(s) 97, 488
BslI CCNNNNNNNGG 2 cut(s) 103, 417
BsnI GGCC 4 cut(s) 9, 96, 362, 780
Bsp143I GATC 2 cut(s) 87, 315
BspACI CCGC 2 cut(s) 332, 452
BspANI GGCC 4 cut(s) 9, 96, 362, 780
BspCNI CTCAG 2 cut(s) 592, 726
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 2 cut(s) 204, 820
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 91, 363
BssMI GATC 2 cut(s) 87, 315
BssNI GRCGYC 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 300, 548, 727
Bst6I CTCTTC 4 cut(s) 165, 283, 420, 426
BstACI GRCGYC 1 cut(s) 491
BstAFI CTTAAG 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 454, 458
BstDEI CTNAG 3 cut(s) 600, 713, 807
BstF5I GGATG 3 cut(s) 163, 442, 758
BstKTI GATC 2 cut(s) 90, 318
BstMBI GATC 2 cut(s) 87, 315
BstMWI GCNNNNNNNGC 3 cut(s) 196, 605, 777
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 2 cut(s) 200, 816
BstV1I GCAGC 2 cut(s) 186, 790
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 4 cut(s) 9, 96, 362, 780
BtsCI GGATG 3 cut(s) 163, 442, 758
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 622, 723, 771
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 2 cut(s) 454, 458
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 480
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 3 cut(s) 457, 517, 825
DdeI CTNAG 3 cut(s) 600, 713, 807
DpnI GATC 2 cut(s) 89, 317
DpnII GATC 2 cut(s) 87, 315
DraIII CACNNNGTG 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 7, 778
Eam1104I CTCTTC 4 cut(s) 165, 283, 420, 426
EarI CTCTTC 4 cut(s) 165, 283, 420, 426
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 363
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 657
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 460, 520, 828
FaiI YATR 7 cut(s) 381, 383, 458, 518, 582, 798, 826
FatI CATG 3 cut(s) 456, 516, 824
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 200, 804, 819
FokI GGATG 3 cut(s) 170, 449, 765
Fsp4HI GCNGC 3 cut(s) 200, 804, 819
GluI GCNGC 3 cut(s) 200, 804, 819
HaeIII GGCC 4 cut(s) 9, 96, 362, 780
HapII CCGG 2 cut(s) 97, 488
HgaI GACGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 3 cut(s) 460, 520, 828
HinfI GANTC 2 cut(s) 602, 733
HpaII CCGG 2 cut(s) 97, 488
HphI GGTGA 7 cut(s) 16, 47, 173, 201, 382, 486, 582
Hpy166II GTNNAC 2 cut(s) 62, 164
Hpy188I TCNGA 4 cut(s) 92, 304, 506, 716
Hpy188III TCNNGA 2 cut(s) 319, 527
Hpy8I GTNNAC 2 cut(s) 62, 164
HpyAV CCTTC 2 cut(s) 26, 678
HpyCH4III ACNGT 3 cut(s) 300, 548, 727
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 8 cut(s) 70, 202, 398, 460, 516, 710, 771, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 605, 777
HpyF3I CTNAG 3 cut(s) 600, 713, 807
HpySE526I ACGT 1 cut(s) 744
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 3 cut(s) 460, 520, 828
Kzo9I GATC 2 cut(s) 87, 315
LguI GCTCTTC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 186, 790
LweI GCATC 2 cut(s) 439, 743
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 2 cut(s) 261, 492
MalI GATC 2 cut(s) 89, 317
MboI GATC 2 cut(s) 87, 315
MboII GAAGA 9 cut(s) 182, 198, 300, 359, 437, 443, 702, 705, 708
MflI RGATCY 1 cut(s) 87
MlsI TGGCCA 2 cut(s) 9, 780
MluCI AATT 3 cut(s) 54, 77, 223
MluNI TGGCCA 2 cut(s) 9, 780
MlyI GAGTC 1 cut(s) 611
Mox20I TGGCCA 2 cut(s) 9, 780
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 2 cut(s) 9, 780
MseI TTAA 3 cut(s) 153, 444, 747
Msp20I TGGCCA 2 cut(s) 9, 780
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 488
MspR9I CCNGG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 3 cut(s) 196, 605, 777
NdeII GATC 2 cut(s) 87, 315
NlaIII CATG 3 cut(s) 460, 520, 828
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 492
NspI RCATGY 1 cut(s) 460
PaeI GCATGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 733
PfoI TCCNGGA 1 cut(s) 657
PkrI GCNGC 3 cut(s) 201, 805, 820
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp1406I AACGTT 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 2 cut(s) 204, 820
PsuI RGATCY 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 3 cut(s) 153, 444, 747
SatI GCNGC 3 cut(s) 200, 804, 819
Sau3AI GATC 2 cut(s) 87, 315
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 659
SfaNI GCATC 2 cut(s) 439, 743
SfcI CTRYAG 2 cut(s) 200, 816
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 460
Sse9I AATT 3 cut(s) 54, 77, 223
SsiI CCGC 2 cut(s) 332, 452
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 300, 548, 727
TaiI ACGT 1 cut(s) 747
TaqI TCGA 2 cut(s) 52, 635
TasI AATT 3 cut(s) 54, 77, 223
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 3 cut(s) 153, 444, 747
Tru9I TTAA 3 cut(s) 153, 444, 747
TscAI CASTG 3 cut(s) 622, 730, 778
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 3 cut(s) 199, 803, 818
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 622, 730, 778
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 3 cut(s) 54, 77, 223
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.