RchiOBHm_Chr7g0189271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014047
Physical Location & Seq
Reverse (-)
8615629 .. 8616699
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16902

Sequence Viewer

Length: 792 bp
ATGCCTCCTAGAATACGTCCACTCCTACTGCGAAAGTATGAGGAGATCAGAAACCGGATAAGGTCAAGAAGACTAAGACCTGATGCTGCTCTCTCCAAGAAACAACTACTTAAGCCTGAGGATAATGAAGAGTTTCAGTCGTTACAACCTTCGCCTGAAAATAGTTTAGTATCTCCAAAGGTACAAACAATACCGGAGAAGAATAGTTCAAAAGTTGCACCAGTTTTGCTAGATCATAATGAGATTAAGGACCAAAAAAATAAGGAGGAAAATAAATTAGAGAACAGCATTGAAGAACATAAAGAGAAAGAAAGTGGGAAAGAGGCAAAGGTTGTGCCTGTGTACATAGGAGGGGTTTTTACACTGGAGCAAGCCGCAGATGGAGAGGAAGAGAATGAAGATCATGAAGATATGCGGAGTATCAACTACCAAATGTTTATGTGTCCTTCATCGCCAAGTTTCCGAGTTTATTGCCAAGAACCAATGGAATTTGAAAAGGAATTGGAAAAGGAAACTGACAAGGATGCAAGTAAATATGACAAAACTTACAGCACAGTTGAGGATATCAACCACAAAAAAACGGATAGTACCGACAGCAGCGTTGATAGCATAGCTGATAAGAATGAAGGCCAGGACACCAAAACACAGAAGAAAGCAAGGAGAAGAAGAATGAAAAATCCATTCCAAATGGGAGGACCAGCAGACTGTTCTGTAAAGAATCTGTTGAATGTTAGAGGTTGCACTGGCCACGACAGAGCCACCCTTCTTGCTGAGAAATCTGCAGCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

30.11

Weight (kDa)

6.08

Isoelectric Point (pI)

66.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 375, 415
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 1 cut(s) 488
AfaI GTAC 3 cut(s) 183, 344, 589
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 4 cut(s) 210, 293, 494, 727
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 2 cut(s) 614, 785
AluI AGCT 2 cut(s) 614, 785
AoxI GGCC 2 cut(s) 628, 745
ApeKI GCWGC 3 cut(s) 86, 597, 782
ApoI RAATTY 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 250, 695
AvaII GGWCC 2 cut(s) 250, 695
AxyI CCTNAGG 1 cut(s) 117
BalI TGGCCA 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 73, 609
BccI CCATC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BciT130I CCWGG 1 cut(s) 632
BfaI CTAG 2 cut(s) 9, 230
BfmI CTRYAG 1 cut(s) 780
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 4 cut(s) 87, 375, 598, 783
BlsI GCNGC 4 cut(s) 88, 376, 599, 784
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 2 cut(s) 250, 695
BmgT120I GGNCC 2 cut(s) 250, 695
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 2 cut(s) 73, 514
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 789
BsaWI WCCGGW 2 cut(s) 54, 193
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 3 cut(s) 221, 369, 748
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 632
BseGI GGATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 108, 762
BseNI ACTGG 3 cut(s) 221, 369, 748
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 73, 609
BshFI GGCC 2 cut(s) 630, 747
BsiSI CCGG 2 cut(s) 55, 194
BsnI GGCC 2 cut(s) 630, 747
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 3 cut(s) 45, 232, 400
BspACI CCGC 2 cut(s) 375, 415
BspANI GGCC 2 cut(s) 630, 747
BspCNI CTCAG 2 cut(s) 109, 763
BspHI TCATGA 1 cut(s) 403
BspMAI CTGCAG 1 cut(s) 784
BspTI CTTAAG 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 3 cut(s) 221, 369, 748
BssMI GATC 3 cut(s) 45, 232, 400
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 556, 707
Bst6I CTCTTC 2 cut(s) 123, 384
BstAFI CTTAAG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 3 cut(s) 74, 117, 771
BstF5I GGATG 1 cut(s) 529
BstKTI GATC 3 cut(s) 48, 235, 403
BstMBI GATC 3 cut(s) 45, 232, 400
BstMWI GCNNNNNNNGC 1 cut(s) 606
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 780
BstV1I GCAGC 2 cut(s) 73, 609
BstV2I GAAGAC 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 630, 747
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 529
BtsIMutI CAGTG 2 cut(s) 362, 741
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 250, 695
Csp6I GTAC 3 cut(s) 182, 343, 588
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 1 cut(s) 404
CviJI RGCY 7 cut(s) 115, 374, 614, 630, 747, 758, 785
CviKI_1 RGCY 7 cut(s) 115, 374, 614, 630, 747, 758, 785
CviQI GTAC 3 cut(s) 182, 343, 588
DdeI CTNAG 3 cut(s) 74, 117, 771
DpnI GATC 3 cut(s) 47, 234, 402
DpnII GATC 3 cut(s) 45, 232, 400
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 2 cut(s) 123, 384
EarI CTCTTC 2 cut(s) 123, 384
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 250, 695
Eco81I CCTNAGG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 630
EcoRV GATATC 1 cut(s) 565
FaeI CATG 1 cut(s) 407
FaiI YATR 9 cut(s) 39, 237, 300, 347, 405, 413, 440, 537, 611
FatI CATG 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 87, 375, 598, 783
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 4 cut(s) 87, 375, 598, 783
FspBI CTAG 2 cut(s) 9, 230
GluI GCNGC 4 cut(s) 87, 375, 598, 783
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 2 cut(s) 630, 747
HapII CCGG 2 cut(s) 55, 194
Hin1II CATG 1 cut(s) 407
HinfI GANTC 1 cut(s) 718
HpaII CCGG 2 cut(s) 55, 194
Hpy166II GTNNAC 2 cut(s) 20, 343
Hpy188I TCNGA 2 cut(s) 50, 464
Hpy188III TCNNGA 2 cut(s) 66, 404
Hpy8I GTNNAC 2 cut(s) 20, 343
HpyAV CCTTC 4 cut(s) 159, 456, 620, 773
HpyCH4III ACNGT 2 cut(s) 556, 707
HpyCH4IV ACGT 2 cut(s) 16, 788
HpyCH4V TGCA 4 cut(s) 218, 527, 741, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 606
HpyF3I CTNAG 3 cut(s) 74, 117, 771
HpySE526I ACGT 2 cut(s) 16, 788
Hsp92II CATG 1 cut(s) 407
Kzo9I GATC 3 cut(s) 45, 232, 400
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 2 cut(s) 73, 609
LweI GCATC 2 cut(s) 73, 514
MaeI CTAG 2 cut(s) 9, 230
MaeII ACGT 2 cut(s) 16, 788
MaeIII GTNAC 1 cut(s) 141
MalI GATC 3 cut(s) 47, 234, 402
MboI GATC 3 cut(s) 45, 232, 400
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 3 cut(s) 275, 488, 500
MluNI TGGCCA 1 cut(s) 747
Mox20I TGGCCA 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 747
MseI TTAA 2 cut(s) 111, 246
Msp20I TGGCCA 1 cut(s) 747
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 2 cut(s) 55, 194
MspR9I CCNGG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 606
NdeII GATC 3 cut(s) 45, 232, 400
NlaIII CATG 1 cut(s) 407
PagI TCATGA 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 718
PkrI GCNGC 4 cut(s) 88, 376, 599, 784
Ppu21I YACGTR 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspPI GGNCC 2 cut(s) 250, 695
PstI CTGCAG 1 cut(s) 784
RsaI GTAC 3 cut(s) 183, 344, 589
RsaNI GTAC 3 cut(s) 182, 343, 588
SaqAI TTAA 2 cut(s) 111, 246
SatI GCNGC 4 cut(s) 87, 375, 598, 783
Sau3AI GATC 3 cut(s) 45, 232, 400
Sau96I GGNCC 2 cut(s) 250, 695
ScrFI CCNGG 1 cut(s) 632
SfaNI GCATC 2 cut(s) 73, 514
SfcI CTRYAG 1 cut(s) 780
SinI GGWCC 2 cut(s) 250, 695
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 275, 488, 500
SsiI CCGC 2 cut(s) 375, 415
SspMI CTAG 2 cut(s) 9, 230
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 556, 707
TaiI ACGT 2 cut(s) 19, 791
TasI AATT 3 cut(s) 275, 488, 500
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 2 cut(s) 111, 246
Tru9I TTAA 2 cut(s) 111, 246
TscAI CASTG 2 cut(s) 369, 748
TseI GCWGC 3 cut(s) 86, 597, 782
TspDTI ATGAA 6 cut(s) 141, 411, 420, 438, 639, 686
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 2 cut(s) 369, 748
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 250, 695
XapI RAATTY 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 9, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.