Rh7BG104300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014047
Physical Location & Seq
Reverse (-)
7778351 .. 7785132
6782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG104300.1

Sequence Viewer

Length: 852 bp
ATGGGGGGCCAAAATTCAAAGCCCACCCCAGAAGCCGAAGCCATGCCTCCTAGAATACGTCCACTCCTACTGCGAAAGTATGAGGAGATCAGAAACCGGATAAGGTCAAGAAGACTAAGACCTGATGCTGCTCTCTCCAAGAAACAACTACTTAAGCCTGAGGATAATGAAGAGGAGGTGGATAATGAAGAGTTTCAATCGTTACAACCTTCGCCTGAAAATAGTTTAGTATCTCCAAAGGTACAAACAATACCGGAGAAGAATAGTTCAAAAGTTGCACCAGTTTTGCTAGATCATAATGAGATTAAGGACCAAAAAAATGAGGAGGAAAATAAATTAGAGAACAGCATTGAAGAACATAAAGAGAAAGAAAGTGGGAAAGAGGCAAAGGTTGTGCCTGTGTACATAGGAGGGGTTTTTACATTGGAGCAAGCCGCAGATGGAGAGGAAGAGAATGAAGATCATGAAGATATGCGGAGTCTCAACTACCAAATGTTTATGTGTCCTTCATCGCCAAGTTTCCGAGTTTATTGCCAAGAACCAATGGAATTTGAAAAGGAATTGGAAAAGGAAACTGACAAGGATGCAAGTAAATATGACAAAACTTACAGCACAGTTGAGGATATCAACCACAAAAAAACGGATAGTACCGACAGCAGTGTTGATAGCATAGCTGATAAGAATGAAGGCCAGGACACCAAAACAAAGAAGAAAGCAAGGAGAAGAAGAATGAAAAATCCATTCCAAATGGGAGGACCAGCAGACTGTTCTGTAAAGAATCTGTTGAATGTTAGAGGTTGCACTGGCCACGACAGAGCCACCCTTCTTGCTGAGAAATCTGCAGCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.23

Weight (kDa)

5.36

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 435, 475
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 2 cut(s) 13, 548
AfaI GTAC 3 cut(s) 243, 404, 649
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 6 cut(s) 18, 197, 270, 353, 554, 787
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 2 cut(s) 674, 845
AluI AGCT 2 cut(s) 674, 845
Alw26I GTCTC 1 cut(s) 485
AoxI GGCC 3 cut(s) 7, 688, 805
ApeKI GCWGC 2 cut(s) 128, 842
ApoI RAATTY 2 cut(s) 13, 548
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 7, 310, 755
AvaII GGWCC 2 cut(s) 310, 755
AxyI CCTNAGG 1 cut(s) 159
BalI TGGCCA 1 cut(s) 807
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 434
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 1 cut(s) 692
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 2 cut(s) 51, 290
BfmI CTRYAG 1 cut(s) 840
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 129, 435, 843
BlsI GCNGC 3 cut(s) 130, 436, 844
Bme1390I CCNGG 1 cut(s) 692
Bme18I GGWCC 2 cut(s) 310, 755
BmgT120I GGNCC 3 cut(s) 7, 310, 755
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 115, 574
BpiI GAAGAC 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 849
BsaWI WCCGGW 2 cut(s) 96, 253
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 2 cut(s) 281, 808
Bse21I CCTNAGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 692
BseGI GGATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 150, 822
BseNI ACTGG 2 cut(s) 281, 808
BseRI GAGGAG 3 cut(s) 98, 188, 338
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 3 cut(s) 9, 690, 807
BsiSI CCGG 2 cut(s) 97, 254
BsmAI GTCTC 1 cut(s) 485
BsnI GGCC 3 cut(s) 9, 690, 807
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 87, 292, 460
BspACI CCGC 2 cut(s) 435, 475
BspANI GGCC 3 cut(s) 9, 690, 807
BspCNI CTCAG 2 cut(s) 151, 823
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 844
BspTI CTTAAG 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 2 cut(s) 281, 808
BssMI GATC 3 cut(s) 87, 292, 460
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 616, 767
Bst6I CTCTTC 3 cut(s) 165, 183, 444
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 116, 159, 831
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 3 cut(s) 90, 295, 463
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 87, 292, 460
BstNI CCWGG 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 690
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 9, 690, 807
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 664, 801
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 7, 310, 755
Csp6I GTAC 3 cut(s) 242, 403, 648
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviAII CATG 2 cut(s) 43, 464
CviQI GTAC 3 cut(s) 242, 403, 648
DdeI CTNAG 3 cut(s) 116, 159, 831
DpnI GATC 3 cut(s) 89, 294, 462
DpnII GATC 3 cut(s) 87, 292, 460
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 3 cut(s) 165, 183, 444
EarI CTCTTC 3 cut(s) 165, 183, 444
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 310, 755
Eco81I CCTNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 690
EcoRV GATATC 1 cut(s) 625
FaeI CATG 2 cut(s) 46, 467
FatI CATG 2 cut(s) 42, 463
Fnu4HI GCNGC 3 cut(s) 129, 435, 843
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 3 cut(s) 129, 435, 843
FspBI CTAG 2 cut(s) 51, 290
GluI GCNGC 3 cut(s) 129, 435, 843
HaeIII GGCC 3 cut(s) 9, 690, 807
HapII CCGG 2 cut(s) 97, 254
Hin1II CATG 2 cut(s) 46, 467
HinfI GANTC 2 cut(s) 478, 778
HpaII CCGG 2 cut(s) 97, 254
Hpy166II GTNNAC 2 cut(s) 62, 403
Hpy188I TCNGA 2 cut(s) 92, 524
Hpy188III TCNNGA 2 cut(s) 108, 464
Hpy8I GTNNAC 2 cut(s) 62, 403
HpyAV CCTTC 4 cut(s) 219, 516, 680, 833
HpyCH4III ACNGT 2 cut(s) 616, 767
HpyCH4IV ACGT 2 cut(s) 58, 848
HpyCH4V TGCA 4 cut(s) 278, 587, 801, 842
HpyF3I CTNAG 3 cut(s) 116, 159, 831
HpySE526I ACGT 2 cut(s) 58, 848
Hsp92II CATG 2 cut(s) 46, 467
Kzo9I GATC 3 cut(s) 87, 292, 460
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 115, 574
MaeI CTAG 2 cut(s) 51, 290
MaeII ACGT 2 cut(s) 58, 848
MaeIII GTNAC 1 cut(s) 201
MalI GATC 3 cut(s) 89, 294, 462
MboI GATC 3 cut(s) 87, 292, 460
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 4 cut(s) 13, 335, 548, 560
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 1 cut(s) 487
Mox20I TGGCCA 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 807
MseI TTAA 2 cut(s) 153, 306
Msp20I TGGCCA 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 254
MspR9I CCNGG 1 cut(s) 692
MvaI CCWGG 1 cut(s) 692
NdeII GATC 3 cut(s) 87, 292, 460
NlaIII CATG 2 cut(s) 46, 467
NlaIV GGNNCC 1 cut(s) 8
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 778
PkrI GCNGC 3 cut(s) 130, 436, 844
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Ppu21I YACGTR 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 3 cut(s) 7, 310, 755
PstI CTGCAG 1 cut(s) 844
RsaI GTAC 3 cut(s) 243, 404, 649
RsaNI GTAC 3 cut(s) 242, 403, 648
SaqAI TTAA 2 cut(s) 153, 306
SatI GCNGC 3 cut(s) 129, 435, 843
Sau3AI GATC 3 cut(s) 87, 292, 460
Sau96I GGNCC 3 cut(s) 7, 310, 755
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 692
SfaNI GCATC 2 cut(s) 115, 574
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 2 cut(s) 310, 755
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 13, 335, 548, 560
SsiI CCGC 2 cut(s) 435, 475
SspMI CTAG 2 cut(s) 51, 290
StyD4I CCNGG 1 cut(s) 690
TaaI ACNGT 2 cut(s) 616, 767
TaiI ACGT 2 cut(s) 61, 851
TasI AATT 4 cut(s) 13, 335, 548, 560
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 2 cut(s) 153, 306
Tru9I TTAA 2 cut(s) 153, 306
TscAI CASTG 2 cut(s) 664, 808
TseI GCWGC 2 cut(s) 128, 842
TspDTI ATGAA 7 cut(s) 183, 201, 471, 480, 498, 699, 746
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 2 cut(s) 664, 808
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 310, 755
XapI RAATTY 2 cut(s) 13, 548
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 51, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.