Rh7DG103500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014047
Physical Location & Seq
Reverse (-)
8787533 .. 8793895
6363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG103500.1

Sequence Viewer

Length: 834 bp
ATGGGGGGCCAAAATTCAAAGCCCACCCCAGAAGCCGAAGCCATGCCTCCTAGAATACGTCCACTCCTACTGCGAAAGTATGAGGAGATCAGAAACCGGATAAGGTCAAGAAGACTAAGACCTGATGCTGCTCTCTCCAAGAAACAACTACTTAAGCCTGAGGATAATGAAGAGTTTCAGTCGTTACAACCTTCGCCTGAAAATAGTTTAGTATCTCCAAAGGTACAAACAATACCGGAGAAGAATAGTTCAAAAGTTGCACCAGTTTTGCTAGATCATAATGAGATTAAGGACCAAAAAAATAAGGAGGAAAATAAATTAGAGAACAGCATTGAAGAACATAAAGAGAAAGAAAGTGGGAAAGAGGCAAAGGTTGTGCCTGTGTACATAGGAGGGGTTTTTACACTGGAGCAAGCCGCAGATGGAGAGGAAGAGAATGAAGATCATGAAGATATGCGGAGTATCAACTACCAAATGTTTATGTGTCCTTCATCGCCAAGTTTCCGAGTTTATTGCCAAGAACCAATGGAATTTGAAAAGGAATTGGAAAAGGAAACTGACAAGGATGCAAGTAAATATGACAAAACTTACAGCACAGTTGAGGATATCAACCACAAAAAAACGGATAGTACCGACAGCAGCGTTGATAGCATAGCTGATAAGAATGAAGGCCAGGACACCAAAACACAGAAGAAAGCAAGGAGAAGAAGAATGAAAAATCCATTCCAAATGGGAGGACCAGCAGACTGTTCTGTAAAGAATCTGTTGAATGTTAGAGGTTGCACTGGCCACGACAGAGCCACCCTTCTTGCTGAGAAATCTGCAGCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.51

Weight (kDa)

5.91

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26934
fragaria_vesca FvH4_5g09010
malus_domestica MD06G1135600.v1.1 MD14G1150800.v1.1
prunus_persica Prupe.5G146000_v2.0.a1 Prupe.5G146000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189271
rosa_laevigata RLG00000004621
rosa_multiflora Rmu_sc0004318.1_g000023 Rmu_sc0007286.1_g000008
rosa_roxburghii Rroxscaffold_3G00265570
rosa_rugosa Rorug06G0496700
rosa_samantha Rh7AG101700 Rh7BG104300 Rh7CG105800 Rh7DG103500
rosa_wichuraiana Rw7G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 417, 457
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 2 cut(s) 13, 530
AfaI GTAC 3 cut(s) 225, 386, 631
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 5 cut(s) 18, 252, 335, 536, 769
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 2 cut(s) 656, 827
AluI AGCT 2 cut(s) 656, 827
AoxI GGCC 3 cut(s) 7, 670, 787
ApeKI GCWGC 3 cut(s) 128, 639, 824
ApoI RAATTY 2 cut(s) 13, 530
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 7, 292, 737
AvaII GGWCC 2 cut(s) 292, 737
AxyI CCTNAGG 1 cut(s) 159
BalI TGGCCA 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 115, 651
BccI CCATC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BciT130I CCWGG 1 cut(s) 674
BfaI CTAG 2 cut(s) 51, 272
BfmI CTRYAG 1 cut(s) 822
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 4 cut(s) 129, 417, 640, 825
BlsI GCNGC 4 cut(s) 130, 418, 641, 826
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 2 cut(s) 292, 737
BmgT120I GGNCC 3 cut(s) 7, 292, 737
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 674
BmsI GCATC 2 cut(s) 115, 556
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 831
BsaWI WCCGGW 2 cut(s) 96, 235
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 3 cut(s) 263, 411, 790
Bse21I CCTNAGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 674
BseGI GGATG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 150, 804
BseNI ACTGG 3 cut(s) 263, 411, 790
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 115, 651
BshFI GGCC 3 cut(s) 9, 672, 789
BsiSI CCGG 2 cut(s) 97, 236
BsnI GGCC 3 cut(s) 9, 672, 789
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 87, 274, 442
BspACI CCGC 2 cut(s) 417, 457
BspANI GGCC 3 cut(s) 9, 672, 789
BspCNI CTCAG 2 cut(s) 151, 805
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 826
BspTI CTTAAG 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 3 cut(s) 263, 411, 790
BssMI GATC 3 cut(s) 87, 274, 442
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 2 cut(s) 598, 749
Bst6I CTCTTC 2 cut(s) 165, 426
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 831
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 116, 159, 813
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 3 cut(s) 90, 277, 445
BstMBI GATC 3 cut(s) 87, 274, 442
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 672
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 2 cut(s) 115, 651
BstV2I GAAGAC 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 9, 672, 789
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 404, 783
Cac8I GCNNGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 7, 292, 737
Csp6I GTAC 3 cut(s) 224, 385, 630
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 2 cut(s) 43, 446
CviQI GTAC 3 cut(s) 224, 385, 630
DdeI CTNAG 3 cut(s) 116, 159, 813
DpnI GATC 3 cut(s) 89, 276, 444
DpnII GATC 3 cut(s) 87, 274, 442
EaeI YGGCCR 1 cut(s) 787
Eam1104I CTCTTC 2 cut(s) 165, 426
EarI CTCTTC 2 cut(s) 165, 426
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 292, 737
Eco81I CCTNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 672
EcoRV GATATC 1 cut(s) 607
FaeI CATG 2 cut(s) 46, 449
FatI CATG 2 cut(s) 42, 445
Fnu4HI GCNGC 4 cut(s) 129, 417, 640, 825
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 4 cut(s) 129, 417, 640, 825
FspBI CTAG 2 cut(s) 51, 272
GluI GCNGC 4 cut(s) 129, 417, 640, 825
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 3 cut(s) 9, 672, 789
HapII CCGG 2 cut(s) 97, 236
Hin1II CATG 2 cut(s) 46, 449
HinfI GANTC 1 cut(s) 760
HpaII CCGG 2 cut(s) 97, 236
Hpy166II GTNNAC 2 cut(s) 62, 385
Hpy188I TCNGA 2 cut(s) 92, 506
Hpy188III TCNNGA 2 cut(s) 108, 446
Hpy8I GTNNAC 2 cut(s) 62, 385
HpyAV CCTTC 4 cut(s) 201, 498, 662, 815
HpyCH4III ACNGT 2 cut(s) 598, 749
HpyCH4IV ACGT 2 cut(s) 58, 830
HpyCH4V TGCA 4 cut(s) 260, 569, 783, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpyF3I CTNAG 3 cut(s) 116, 159, 813
HpySE526I ACGT 2 cut(s) 58, 830
Hsp92II CATG 2 cut(s) 46, 449
Kzo9I GATC 3 cut(s) 87, 274, 442
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 2 cut(s) 115, 651
LweI GCATC 2 cut(s) 115, 556
MaeI CTAG 2 cut(s) 51, 272
MaeII ACGT 2 cut(s) 58, 830
MaeIII GTNAC 1 cut(s) 183
MalI GATC 3 cut(s) 89, 276, 444
MboI GATC 3 cut(s) 87, 274, 442
MlsI TGGCCA 1 cut(s) 789
MluCI AATT 4 cut(s) 13, 317, 530, 542
MluNI TGGCCA 1 cut(s) 789
Mox20I TGGCCA 1 cut(s) 789
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 1 cut(s) 789
MseI TTAA 2 cut(s) 153, 288
Msp20I TGGCCA 1 cut(s) 789
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 2 cut(s) 97, 236
MspR9I CCNGG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 1 cut(s) 648
NdeII GATC 3 cut(s) 87, 274, 442
NlaIII CATG 2 cut(s) 46, 449
NlaIV GGNNCC 1 cut(s) 8
PagI TCATGA 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 760
PkrI GCNGC 4 cut(s) 130, 418, 641, 826
Ppu21I YACGTR 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 3 cut(s) 7, 292, 737
PstI CTGCAG 1 cut(s) 826
RsaI GTAC 3 cut(s) 225, 386, 631
RsaNI GTAC 3 cut(s) 224, 385, 630
SaqAI TTAA 2 cut(s) 153, 288
SatI GCNGC 4 cut(s) 129, 417, 640, 825
Sau3AI GATC 3 cut(s) 87, 274, 442
Sau96I GGNCC 3 cut(s) 7, 292, 737
ScrFI CCNGG 1 cut(s) 674
SfaNI GCATC 2 cut(s) 115, 556
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 2 cut(s) 292, 737
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 13, 317, 530, 542
SsiI CCGC 2 cut(s) 417, 457
SspMI CTAG 2 cut(s) 51, 272
StyD4I CCNGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 598, 749
TaiI ACGT 2 cut(s) 61, 833
TasI AATT 4 cut(s) 13, 317, 530, 542
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 2 cut(s) 153, 288
Tru9I TTAA 2 cut(s) 153, 288
TscAI CASTG 2 cut(s) 411, 790
TseI GCWGC 3 cut(s) 128, 639, 824
TspDTI ATGAA 6 cut(s) 183, 453, 462, 480, 681, 728
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 2 cut(s) 411, 790
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 292, 737
XapI RAATTY 2 cut(s) 13, 530
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 51, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.