Rorug06G0496700

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000526
Physical Location & Seq
Forward (+)
61327557 .. 61330413
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0496700.1

Sequence Viewer

Length: 651 bp
ATGGTAACTCAACAGTTTGTGATTAAAGGAAAGAGAAGGCGCATATGGGGAGGAGCTTTTCTCTGTTGGGTTCTGTTAATGTTGGTCACTCCCAAAATTTCTCACTCCCCAAATCACCATCACTATGCTGACATGCGCAATTTCCTTGGAGTGCCCAACACATTGAATGTGATCACCAGTTTCCCATTCTTGGTTGTTGGGGTTCTGGGTTTTGTTCTCTGTGTCCAAGGAGGCTTTTTCAATATCAGTTTGCCAGGTGAAGTTTGGGGTTGGGCACTGTTCTATGCAGGAATAGCAGGGCTGGCTTTTGGGTCTGCTTATTATCATTTGAAGCCTGATGATAGTAGAGTGACTTGGGATACCTTGCCGATGATGATCGCATTCTCCTCGCTTTTCTCTAGTTTTATAGTGGAGAGAGCGGGAGAGAGAATTGGCTTAAGTTGTCTATTTGCACTCCTCGTTATTGCGGTTCTTAGTACTGCTTATGAGAGAACATGCAATGATATCAGATTGTACATGATGTTCCAATTGATTCCATGTATAGCAATTCCAGGAATGACATTTGTGTTCCCACCCAAATATACTCACTCAAGATATTGGCTTTGGGCAGCAGCAACTCTATACAGGGGCTTACATTCTCTCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

216

Amino Acids

24.42

Weight (kDa)

9.35

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ceramidase PF05875 54 - 171 4e-07 Ceramidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 419
AciI CCGC 2 cut(s) 419, 467
AcsI RAATTY 2 cut(s) 96, 645
AfaI GTAC 2 cut(s) 478, 515
AfiI CCNNNNNNNGG 1 cut(s) 190
AflII CTTAAG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 166, 241, 331
AjnI CCWGG 2 cut(s) 253, 550
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 608, 611
ApoI RAATTY 2 cut(s) 96, 645
AspLEI GCGC 2 cut(s) 42, 138
AsuHPI GGTGA 3 cut(s) 107, 166, 269
BaeGI GKGCMC 2 cut(s) 156, 277
BbvI GCAGC 2 cut(s) 620, 623
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 369, 403
BciT130I CCWGG 2 cut(s) 255, 552
BciVI GTATCC 1 cut(s) 352
BclI TGATCA 1 cut(s) 171
BfaI CTAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 436
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 2 cut(s) 609, 612
BlsI GCNGC 2 cut(s) 610, 613
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 255, 552
BmrFI CCNGG 2 cut(s) 255, 552
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpuEI CTTGAG 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 145, 226
BsaXI ACNNNNNCTCC 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 2 cut(s) 255, 552
BseDI CCNNGG 2 cut(s) 145, 226
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 3 cut(s) 66, 376, 446
BseSI GKGCMC 2 cut(s) 156, 277
BseXI GCAGC 2 cut(s) 620, 623
BslI CCNNNNNNNGG 1 cut(s) 190
BsmI GAATGC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 156, 277
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 2 cut(s) 171, 375
BspACI CCGC 2 cut(s) 419, 467
BspTI CTTAAG 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 505
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 145, 226
BssMI GATC 2 cut(s) 171, 375
BssT1I CCWWGG 2 cut(s) 145, 226
Bst2UI CCWGG 2 cut(s) 255, 552
Bst4CI ACNGT 2 cut(s) 15, 279
BstAFI CTTAAG 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 473
BstHHI GCGC 2 cut(s) 42, 138
BstKTI GATC 2 cut(s) 174, 378
BstMBI GATC 2 cut(s) 171, 375
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstNI CCWGG 2 cut(s) 255, 552
BstNSI RCATGY 2 cut(s) 136, 498
BstSCI CCNGG 2 cut(s) 253, 550
BstSLI GKGCMC 2 cut(s) 156, 277
BstV1I GCAGC 2 cut(s) 620, 623
BsuI GTATCC 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 2 cut(s) 42, 138
Csp6I GTAC 2 cut(s) 477, 514
CviAII CATG 4 cut(s) 133, 495, 517, 537
CviJI RGCY 8 cut(s) 56, 234, 301, 305, 334, 435, 601, 630
CviKI_1 RGCY 8 cut(s) 56, 234, 301, 305, 334, 435, 601, 630
CviQI GTAC 2 cut(s) 477, 514
DdeI CTNAG 1 cut(s) 473
DpnI GATC 2 cut(s) 173, 377
DpnII GATC 2 cut(s) 171, 375
Eco130I CCWWGG 2 cut(s) 145, 226
Eco32I GATATC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 253, 550
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 145, 226
ErhI CCWWGG 2 cut(s) 145, 226
FaeI CATG 4 cut(s) 136, 498, 520, 540
FatI CATG 4 cut(s) 132, 494, 516, 536
FauI CCCGC 1 cut(s) 412
FauNDI CATATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 609, 612
Fsp4HI GCNGC 2 cut(s) 609, 612
FspBI CTAG 1 cut(s) 399
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 41, 137
GluI GCNGC 2 cut(s) 609, 612
HhaI GCGC 2 cut(s) 42, 138
Hin1II CATG 4 cut(s) 136, 498, 520, 540
Hin6I GCGC 2 cut(s) 40, 136
HinP1I GCGC 2 cut(s) 40, 136
HinfI GANTC 1 cut(s) 532
HphI GGTGA 3 cut(s) 107, 166, 269
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 1 cut(s) 591
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 15, 279
HpyCH4V TGCA 3 cut(s) 287, 452, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 473
Hsp92II CATG 4 cut(s) 136, 498, 520, 540
HspAI GCGC 2 cut(s) 40, 136
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 2 cut(s) 171, 375
LmnI GCTCC 1 cut(s) 53
Lsp1109I GCAGC 2 cut(s) 620, 623
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 4, 85, 349
MalI GATC 2 cut(s) 173, 377
MbiI CCGCTC 1 cut(s) 419
MboI GATC 2 cut(s) 171, 375
MfeI CAATTG 1 cut(s) 527
MhlI GDGCHC 2 cut(s) 156, 277
MluCI AATT 6 cut(s) 96, 139, 429, 527, 546, 645
MnlI CCTC 4 cut(s) 44, 224, 397, 467
MseI TTAA 3 cut(s) 24, 77, 437
MslI CAYNNNNRTG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 436
MspR9I CCNGG 2 cut(s) 255, 552
MunI CAATTG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 255, 552
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 171, 375
NlaIII CATG 4 cut(s) 136, 498, 520, 540
NmuCI GTSAC 2 cut(s) 85, 349
NsbI TGCGCA 1 cut(s) 137
NspI RCATGY 2 cut(s) 136, 498
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 532
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 2 cut(s) 610, 613
Psp6I CCWGG 2 cut(s) 253, 550
PspGI CCWGG 2 cut(s) 253, 550
PsrI GAACNNNNNNTAC 2 cut(s) 506, 538
RsaI GTAC 2 cut(s) 478, 515
RsaNI GTAC 2 cut(s) 477, 514
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 3 cut(s) 24, 77, 437
SatI GCNGC 2 cut(s) 609, 612
Sau3AI GATC 2 cut(s) 171, 375
ScaI AGTACT 1 cut(s) 478
ScrFI CCNGG 2 cut(s) 255, 552
SduI GDGCHC 2 cut(s) 156, 277
SetI ASST 3 cut(s) 58, 259, 365
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 436, 589
SmoI CTYRAG 2 cut(s) 436, 589
Sse9I AATT 6 cut(s) 96, 139, 429, 527, 546, 645
SsiI CCGC 2 cut(s) 419, 467
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 253, 550
StyI CCWWGG 2 cut(s) 145, 226
TaaI ACNGT 2 cut(s) 15, 279
TasI AATT 6 cut(s) 96, 139, 429, 527, 546, 645
TatI WGTACW 2 cut(s) 476, 513
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 3 cut(s) 24, 77, 437
Tru9I TTAA 3 cut(s) 24, 77, 437
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 85, 349
TseI GCWGC 2 cut(s) 608, 611
Tsp45I GTSAC 2 cut(s) 85, 349
TspRI CASTG 1 cut(s) 282
Vha464I CTTAAG 1 cut(s) 436
XapI RAATTY 2 cut(s) 96, 645
XceI RCATGY 2 cut(s) 136, 498
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XspI CTAG 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.