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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 630, 1137 |
| AccII | CGCG | 2 cut(s) | 415, 972 |
| AccIII | TCCGGA | 1 cut(s) | 295 |
| AciI | CCGC | 4 cut(s) | 415, 1094, 1336, 1419 |
| AclWI | GGATC | 3 cut(s) | 75, 350, 363 |
| AcsI | RAATTY | 5 cut(s) | 530, 661, 744, 1114, 1409 |
| AfaI | GTAC | 2 cut(s) | 143, 930 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1236 |
| AflII | CTTAAG | 1 cut(s) | 1324 |
| AgsI | TTSAA | 5 cut(s) | 54, 109, 318, 880, 1130 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1472, 1504 |
| AleI | CACNNNNGTG | 1 cut(s) | 791 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1037, 1069 |
| AluBI | AGCT | 7 cut(s) | 280, 492, 618, 1038, 1213, 1323, 1460 |
| AluI | AGCT | 7 cut(s) | 280, 492, 618, 1038, 1213, 1323, 1460 |
| Alw21I | GWGCWC | 1 cut(s) | 1462 |
| Alw26I | GTCTC | 2 cut(s) | 1231, 1387 |
| AlwI | GGATC | 3 cut(s) | 75, 350, 363 |
| Ama87I | CYCGRG | 2 cut(s) | 137, 623 |
| Aor13HI | TCCGGA | 1 cut(s) | 295 |
| AoxI | GGCC | 1 cut(s) | 71 |
| ApeKI | GCWGC | 4 cut(s) | 274, 277, 1320, 1421 |
| ApoI | RAATTY | 5 cut(s) | 530, 661, 744, 1114, 1409 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 956, 1355 |
| AspLEI | GCGC | 4 cut(s) | 380, 415, 600, 1331 |
| AspS9I | GGNCC | 1 cut(s) | 259 |
| AsuC2I | CCSGG | 2 cut(s) | 624, 625 |
| AsuHPI | GGTGA | 6 cut(s) | 482, 580, 612, 778, 1355, 1504 |
| AsuNHI | GCTAGC | 1 cut(s) | 577 |
| AvaI | CYCGRG | 2 cut(s) | 137, 623 |
| AvaII | GGWCC | 1 cut(s) | 259 |
| BamHI | GGATCC | 1 cut(s) | 355 |
| BanII | GRGCYC | 1 cut(s) | 1462 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 912, 944 |
| BauI | CACGAG | 1 cut(s) | 791 |
| BbsI | GAAGAC | 2 cut(s) | 927, 1421 |
| Bbv12I | GWGCWC | 1 cut(s) | 1462 |
| BbvI | GCAGC | 4 cut(s) | 286, 289, 1332, 1433 |
| BccI | CCATC | 1 cut(s) | 270 |
| BceAI | ACGGC | 1 cut(s) | 490 |
| BclI | TGATCA | 2 cut(s) | 570, 1102 |
| BcnI | CCSGG | 2 cut(s) | 624, 625 |
| BcoDI | GTCTC | 2 cut(s) | 1231, 1387 |
| BfaI | CTAG | 3 cut(s) | 578, 822, 1476 |
| BfmI | CTRYAG | 3 cut(s) | 456, 801, 1318 |
| BfoI | RGCGCY | 1 cut(s) | 601 |
| BfrI | CTTAAG | 1 cut(s) | 1324 |
| BglII | AGATCT | 1 cut(s) | 403 |
| BisI | GCNGC | 4 cut(s) | 275, 278, 1321, 1422 |
| BlsI | GCNGC | 4 cut(s) | 276, 279, 1322, 1423 |
| Bme1390I | CCNGG | 2 cut(s) | 624, 625 |
| Bme18I | GGWCC | 1 cut(s) | 259 |
| BmeT110I | CYCGRG | 2 cut(s) | 137, 623 |
| BmgT120I | GGNCC | 1 cut(s) | 259 |
| BmiI | GGNNCC | 2 cut(s) | 117, 357 |
| BmrFI | CCNGG | 2 cut(s) | 624, 625 |
| BmsI | GCATC | 4 cut(s) | 301, 418, 799, 1513 |
| BmtI | GCTAGC | 1 cut(s) | 581 |
| BpiI | GAAGAC | 2 cut(s) | 927, 1421 |
| BpmI | CTGGAG | 1 cut(s) | 1448 |
| BpuEI | CTTGAG | 1 cut(s) | 268 |
| BpuMI | CCSGG | 2 cut(s) | 624, 625 |
| BsaJI | CCNNGG | 5 cut(s) | 359, 623, 624, 1057, 1120 |
| BsaWI | WCCGGW | 1 cut(s) | 295 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1236 |
| Bse1I | ACTGG | 3 cut(s) | 815, 1133, 1465 |
| Bse3DI | GCAATG | 3 cut(s) | 127, 1338, 1579 |
| BseAI | TCCGGA | 1 cut(s) | 295 |
| BseDI | CCNNGG | 5 cut(s) | 359, 623, 624, 1057, 1120 |
| BseGI | GGATG | 2 cut(s) | 262, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1236 |
| BseMI | GCAATG | 3 cut(s) | 127, 1338, 1579 |
| BseMII | CTCAG | 3 cut(s) | 348, 446, 662 |
| BseNI | ACTGG | 3 cut(s) | 815, 1133, 1465 |
| BseRI | GAGGAG | 3 cut(s) | 554, 559, 1499 |
| BseXI | GCAGC | 4 cut(s) | 286, 289, 1332, 1433 |
| BseYI | CCCAGC | 1 cut(s) | 1452 |
| BsgI | GTGCAG | 1 cut(s) | 1240 |
| Bsh1236I | CGCG | 2 cut(s) | 415, 972 |
| BshFI | GGCC | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1462 |
| BsiHKCI | CYCGRG | 2 cut(s) | 137, 623 |
| BsiSI | CCGG | 3 cut(s) | 296, 624, 1185 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1236 |
| BsmAI | GTCTC | 2 cut(s) | 1231, 1387 |
| BsmI | GAATGC | 3 cut(s) | 635, 767, 1161 |
| BsnI | GGCC | 1 cut(s) | 73 |
| BsoBI | CYCGRG | 2 cut(s) | 137, 623 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1462 |
| Bsp13I | TCCGGA | 1 cut(s) | 295 |
| Bsp143I | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| Bsp19I | CCATGG | 1 cut(s) | 1057 |
| Bsp68I | TCGCGA | 1 cut(s) | 972 |
| BspACI | CCGC | 4 cut(s) | 415, 1094, 1336, 1419 |
| BspANI | GGCC | 1 cut(s) | 73 |
| BspCNI | CTCAG | 3 cut(s) | 347, 445, 661 |
| BspEI | TCCGGA | 1 cut(s) | 295 |
| BspFNI | CGCG | 2 cut(s) | 415, 972 |
| BspLI | GGNNCC | 2 cut(s) | 117, 357 |
| BspMAI | CTGCAG | 2 cut(s) | 460, 1322 |
| BspOI | GCTAGC | 1 cut(s) | 581 |
| BspPI | GGATC | 3 cut(s) | 75, 350, 363 |
| BspTI | CTTAAG | 1 cut(s) | 1324 |
| BsrDI | GCAATG | 3 cut(s) | 127, 1338, 1579 |
| BsrI | ACTGG | 3 cut(s) | 815, 1133, 1465 |
| BssECI | CCNNGG | 5 cut(s) | 359, 623, 624, 1057, 1120 |
| BssMI | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| BssSI | CACGAG | 1 cut(s) | 791 |
| BssT1I | CCWWGG | 3 cut(s) | 359, 1057, 1120 |
| Bst2BI | CACGAG | 1 cut(s) | 791 |
| Bst4CI | ACNGT | 2 cut(s) | 373, 802 |
| Bst6I | CTCTTC | 1 cut(s) | 1057 |
| BstAFI | CTTAAG | 1 cut(s) | 1324 |
| BstC8I | GCNNGC | 5 cut(s) | 579, 993, 1021, 1458, 1503 |
| BstDEI | CTNAG | 3 cut(s) | 334, 432, 648 |
| BstDSI | CCRYGG | 1 cut(s) | 1057 |
| BstF5I | GGATG | 2 cut(s) | 262, 292 |
| BstFNI | CGCG | 2 cut(s) | 415, 972 |
| BstH2I | RGCGCY | 1 cut(s) | 601 |
| BstHHI | GCGC | 4 cut(s) | 380, 415, 600, 1331 |
| BstKTI | GATC | 7 cut(s) | 70, 237, 358, 406, 573, 1105, 1561 |
| BstMAI | GTCTC | 2 cut(s) | 1231, 1387 |
| BstMBI | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 124, 1326 |
| BstSCI | CCNGG | 2 cut(s) | 622, 623 |
| BstSFI | CTRYAG | 3 cut(s) | 456, 801, 1318 |
| BstUI | CGCG | 2 cut(s) | 415, 972 |
| BstV1I | GCAGC | 4 cut(s) | 286, 289, 1332, 1433 |
| BstV2I | GAAGAC | 2 cut(s) | 927, 1421 |
| BstX2I | RGATCY | 2 cut(s) | 355, 403 |
| BstYI | RGATCY | 2 cut(s) | 355, 403 |
| BsuRI | GGCC | 1 cut(s) | 73 |
| BtgI | CCRYGG | 1 cut(s) | 1057 |
| BtsCI | GGATG | 2 cut(s) | 262, 292 |
| BtsI | GCAGTG | 2 cut(s) | 905, 1252 |
| BtsIMutI | CAGTG | 4 cut(s) | 369, 905, 1252, 1277 |
| BtuMI | TCGCGA | 1 cut(s) | 972 |
| Cac8I | GCNNGC | 5 cut(s) | 579, 993, 1021, 1458, 1503 |
| CfoI | GCGC | 4 cut(s) | 380, 415, 600, 1331 |
| Cfr13I | GGNCC | 1 cut(s) | 259 |
| Cfr9I | CCCGGG | 1 cut(s) | 623 |
| Csp6I | GTAC | 2 cut(s) | 142, 929 |
| CviAII | CATG | 5 cut(s) | 58, 1058, 1379, 1386, 1470 |
| CviQI | GTAC | 2 cut(s) | 142, 929 |
| DdeI | CTNAG | 3 cut(s) | 334, 432, 648 |
| DpnI | GATC | 7 cut(s) | 69, 236, 357, 405, 572, 1104, 1560 |
| DpnII | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| Eam1104I | CTCTTC | 1 cut(s) | 1057 |
| EarI | CTCTTC | 1 cut(s) | 1057 |
| Ecl136II | GAGCTC | 1 cut(s) | 1460 |
| Eco130I | CCWWGG | 3 cut(s) | 359, 1057, 1120 |
| Eco24I | GRGCYC | 1 cut(s) | 1462 |
| Eco47I | GGWCC | 1 cut(s) | 259 |
| Eco53kI | GAGCTC | 1 cut(s) | 1460 |
| Eco88I | CYCGRG | 2 cut(s) | 137, 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 1460 |
| EcoRI | GAATTC | 2 cut(s) | 530, 744 |
| EcoT14I | CCWWGG | 3 cut(s) | 359, 1057, 1120 |
| EcoT22I | ATGCAT | 2 cut(s) | 294, 1163 |
| EcoT38I | GRGCYC | 1 cut(s) | 1462 |
| ErhI | CCWWGG | 3 cut(s) | 359, 1057, 1120 |
| FaeI | CATG | 5 cut(s) | 61, 1061, 1382, 1389, 1473 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 732, 764, 894, 926 |
| FatI | CATG | 5 cut(s) | 57, 1057, 1378, 1385, 1469 |
| FauNDI | CATATG | 2 cut(s) | 589, 1597 |
| FbaI | TGATCA | 2 cut(s) | 570, 1102 |
| FblI | GTMKAC | 2 cut(s) | 630, 1137 |
| Fnu4HI | GCNGC | 4 cut(s) | 275, 278, 1321, 1422 |
| FokI | GGATG | 2 cut(s) | 249, 279 |
| FriOI | GRGCYC | 1 cut(s) | 1462 |
| Fsp4HI | GCNGC | 4 cut(s) | 275, 278, 1321, 1422 |
| FspBI | CTAG | 3 cut(s) | 578, 822, 1476 |
| GlaI | GCGC | 4 cut(s) | 379, 414, 599, 1330 |
| GluI | GCNGC | 4 cut(s) | 275, 278, 1321, 1422 |
| GsaI | CCCAGC | 1 cut(s) | 1456 |
| GsuI | CTGGAG | 1 cut(s) | 1448 |
| HaeII | RGCGCY | 1 cut(s) | 601 |
| HaeIII | GGCC | 1 cut(s) | 73 |
| HapII | CCGG | 3 cut(s) | 296, 624, 1185 |
| HhaI | GCGC | 4 cut(s) | 380, 415, 600, 1331 |
| Hin1II | CATG | 5 cut(s) | 61, 1061, 1382, 1389, 1473 |
| Hin6I | GCGC | 4 cut(s) | 378, 413, 598, 1329 |
| HinP1I | GCGC | 4 cut(s) | 378, 413, 598, 1329 |
| HincII | GTYRAC | 1 cut(s) | 1138 |
| HindII | GTYRAC | 1 cut(s) | 1138 |
| HinfI | GANTC | 5 cut(s) | 330, 736, 893, 1079, 1426 |
| HpaII | CCGG | 3 cut(s) | 296, 624, 1185 |
| HphI | GGTGA | 6 cut(s) | 482, 580, 612, 778, 1355, 1504 |
| Hpy166II | GTNNAC | 5 cut(s) | 631, 657, 1138, 1245, 1537 |
| Hpy188I | TCNGA | 8 cut(s) | 99, 184, 536, 651, 1113, 1167, 1174, 1231 |
| Hpy188III | TCNNGA | 9 cut(s) | 65, 152, 296, 705, 793, 856, 971, 1000, 1267 |
| Hpy8I | GTNNAC | 5 cut(s) | 631, 657, 1138, 1245, 1537 |
| Hpy99I | CGWCG | 2 cut(s) | 257, 1142 |
| HpyAV | CCTTC | 6 cut(s) | 227, 611, 650, 679, 1474, 1510 |
| HpyCH4III | ACNGT | 2 cut(s) | 373, 802 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 124, 1326 |
| HpyF3I | CTNAG | 3 cut(s) | 334, 432, 648 |
| Hsp92II | CATG | 5 cut(s) | 61, 1061, 1382, 1389, 1473 |
| HspAI | GCGC | 4 cut(s) | 378, 413, 598, 1329 |
| Kpn2I | TCCGGA | 1 cut(s) | 295 |
| Ksp22I | TGATCA | 2 cut(s) | 570, 1102 |
| Kzo9I | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| LmnI | GCTCC | 4 cut(s) | 115, 450, 595, 1210 |
| Lsp1109I | GCAGC | 4 cut(s) | 286, 289, 1332, 1433 |
| LweI | GCATC | 4 cut(s) | 301, 418, 799, 1513 |
| MaeI | CTAG | 3 cut(s) | 578, 822, 1476 |
| MaeIII | GTNAC | 3 cut(s) | 470, 693, 939 |
| MalI | GATC | 7 cut(s) | 69, 236, 357, 405, 572, 1104, 1560 |
| MboI | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| MflI | RGATCY | 2 cut(s) | 355, 403 |
| MhlI | GDGCHC | 1 cut(s) | 1462 |
| MlyI | GAGTC | 3 cut(s) | 324, 902, 1435 |
| MmeI | TCCRAC | 2 cut(s) | 245, 668 |
| Mph1103I | ATGCAT | 2 cut(s) | 294, 1163 |
| MroI | TCCGGA | 1 cut(s) | 295 |
| MroXI | GAANNNNTTC | 2 cut(s) | 956, 1355 |
| MseI | TTAA | 5 cut(s) | 27, 324, 750, 1325, 1645 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 791 |
| MspCI | CTTAAG | 1 cut(s) | 1324 |
| MspI | CCGG | 3 cut(s) | 296, 624, 1185 |
| MspR9I | CCNGG | 2 cut(s) | 624, 625 |
| Mva1269I | GAATGC | 3 cut(s) | 635, 767, 1161 |
| MvnI | CGCG | 2 cut(s) | 415, 972 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 124, 1326 |
| NciI | CCSGG | 2 cut(s) | 624, 625 |
| NcoI | CCATGG | 1 cut(s) | 1057 |
| NdeI | CATATG | 2 cut(s) | 589, 1597 |
| NdeII | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| NheI | GCTAGC | 1 cut(s) | 577 |
| NlaIII | CATG | 5 cut(s) | 61, 1061, 1382, 1389, 1473 |
| NlaIV | GGNNCC | 2 cut(s) | 117, 357 |
| NmuCI | GTSAC | 2 cut(s) | 470, 939 |
| NruI | TCGCGA | 1 cut(s) | 972 |
| NsiI | ATGCAT | 2 cut(s) | 294, 1163 |
| OliI | CACNNNNGTG | 1 cut(s) | 791 |
| PctI | GAATGC | 3 cut(s) | 635, 767, 1161 |
| PdmI | GAANNNNTTC | 2 cut(s) | 956, 1355 |
| PfeI | GAWTC | 2 cut(s) | 736, 1079 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 4 cut(s) | 276, 279, 1322, 1423 |
| PleI | GAGTC | 3 cut(s) | 324, 901, 1434 |
| PpsI | GAGTC | 3 cut(s) | 324, 901, 1434 |
| Psp124BI | GAGCTC | 1 cut(s) | 1462 |
| PspFI | CCCAGC | 1 cut(s) | 1452 |
| PspN4I | GGNNCC | 2 cut(s) | 117, 357 |
| PspPI | GGNCC | 1 cut(s) | 259 |
| PstI | CTGCAG | 2 cut(s) | 460, 1322 |
| PsuI | RGATCY | 2 cut(s) | 355, 403 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| RruI | TCGCGA | 1 cut(s) | 972 |
| RsaI | GTAC | 2 cut(s) | 143, 930 |
| RsaNI | GTAC | 2 cut(s) | 142, 929 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 791 |
| SacI | GAGCTC | 1 cut(s) | 1462 |
| SalI | GTCGAC | 1 cut(s) | 1136 |
| SaqAI | TTAA | 5 cut(s) | 27, 324, 750, 1325, 1645 |
| SatI | GCNGC | 4 cut(s) | 275, 278, 1321, 1422 |
| Sau3AI | GATC | 7 cut(s) | 67, 234, 355, 403, 570, 1102, 1558 |
| Sau96I | GGNCC | 1 cut(s) | 259 |
| SchI | GAGTC | 3 cut(s) | 324, 902, 1435 |
| ScrFI | CCNGG | 2 cut(s) | 624, 625 |
| SduI | GDGCHC | 1 cut(s) | 1462 |
| SfaNI | GCATC | 4 cut(s) | 301, 418, 799, 1513 |
| SfcI | CTRYAG | 3 cut(s) | 456, 801, 1318 |
| SinI | GGWCC | 1 cut(s) | 259 |
| SmaI | CCCGGG | 1 cut(s) | 625 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 791 |
| SmlI | CTYRAG | 2 cut(s) | 283, 1324 |
| SmoI | CTYRAG | 2 cut(s) | 283, 1324 |
| SsiI | CCGC | 4 cut(s) | 415, 1094, 1336, 1419 |
| SspI | AATATT | 2 cut(s) | 424, 1006 |
| SspMI | CTAG | 3 cut(s) | 578, 822, 1476 |
| SstI | GAGCTC | 1 cut(s) | 1462 |
| StyD4I | CCNGG | 2 cut(s) | 622, 623 |
| StyI | CCWWGG | 3 cut(s) | 359, 1057, 1120 |
| TaaI | ACNGT | 2 cut(s) | 373, 802 |
| TaqI | TCGA | 4 cut(s) | 558, 1137, 1193, 1557 |
| TfiI | GAWTC | 2 cut(s) | 736, 1079 |
| Tru1I | TTAA | 5 cut(s) | 27, 324, 750, 1325, 1645 |
| Tru9I | TTAA | 5 cut(s) | 27, 324, 750, 1325, 1645 |
| TscAI | CASTG | 4 cut(s) | 376, 912, 1259, 1284 |
| TseFI | GTSAC | 2 cut(s) | 470, 939 |
| TseI | GCWGC | 4 cut(s) | 274, 277, 1320, 1421 |
| Tsp45I | GTSAC | 2 cut(s) | 470, 939 |
| TspDTI | ATGAA | 7 cut(s) | 26, 593, 661, 888, 1071, 1529, 1608 |
| TspMI | CCCGGG | 1 cut(s) | 623 |
| TspRI | CASTG | 4 cut(s) | 376, 912, 1259, 1284 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| Vha464I | CTTAAG | 1 cut(s) | 1324 |
| VpaK11BI | GGWCC | 1 cut(s) | 259 |
| XapI | RAATTY | 5 cut(s) | 530, 661, 744, 1114, 1409 |
| XmaI | CCCGGG | 1 cut(s) | 623 |
| XmiI | GTMKAC | 2 cut(s) | 630, 1137 |
| XmnI | GAANNNNTTC | 2 cut(s) | 956, 1355 |
| XspI | CTAG | 3 cut(s) | 578, 822, 1476 |
| Zsp2I | ATGCAT | 2 cut(s) | 294, 1163 |