Prupe.5G145800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000526
Physical Location & Seq
Forward (+)
13410787 .. 13413945
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G145800.1

Sequence Viewer

Length: 1293 bp
ATGGCGACACCGAGAGAGCACATAGAAGAGATAAGGAAGAAAAAGTTCTCCATAGGAGCAGATGCACTCAACCCTTTAACTGAGGATCTTCACCAGGCTATCAAGACTCTCTCTGCTGAACTCTATGCCAAAGATGTTCACTTCCTCATGGAACTCATCCAGAATGCAGAAGATAATGAGTACGCAGAGGGGGTTGATCCATCACTTGAGTTTGTCATTACATCCCGGGATATAACAGCCACGGGGGCCCCTGCCACATTGCTGGTTTTCAACAATGAGAAAGGATTTTCTCCAGAAAACATAGAGTCTATTTGCAGTATTGGACGGTCCACCAAGAAAGGCAACAGGAATCGCGGTTATATTGGGGAGAAAGGAATTGGGTTCAAAAGTGTGTTTCTCATCACTGCACACCCTTATGTTTTCAGCAATGGATATCAATTAAGGTTCAGTGAAGAACCTTGTGTGCATTGCAATCTCGGGTACGTAGTTCCTGAATGGGTTGACACAAACCCTAATTTTTCTGACATAAAACAGTTATATGGTTCTGCTTCTGCTTCTGCTCTTCCCACCACAACACTGATCTTACCTCTAAAGGCTGACAAGGTCCAGCCTGTGAAGCAGCAGCTCTCAAGCATACACCGTGAGCTTCTGTTGTTTCTTTCAAAGATTAAGAAGCTCTCAGTGAGGGAAGACAATGGCGATCCAAGTCTCGACACTGTAAGTGCAATTGAGATAGCAAGTGAGACTAGCTTTGTGACCAGAAAGAACATTGATGCGCAGTCCTACACCGTCCATCTCTCTGCAGAAGAAAGTAGCAATGCGGTTGAAAATGAATGCAGCTATTATATGTGGAAGCAGAAGTTTCCTGTCAGGCAGGAATGCAGAGTGGAGAAGAGAATGGAGGTAGATGAGTGGGTGATCACGCTTGCATTTCCAATCGGAGAACACTTTCATAGAGGAACAAGCTCACCCGGGGTCTATGCCTTCCTTCCAACCGAGATGGTGACAAACTTTCCCTTCATAATTCAAGCTGATTTTCTTCTTGCATCATCAAGGGAAACAATTCTCCTGGACAACATATGGAATAAGGGTATTCTTGATTGTGTGCCCACTGCATTTGTTAATGCATTTATCTCACTTGTTAGATCCGTTGAAGATGCTCCAGTGTCTAGTTTGCATCGTATATTCAAGTTTCTGCCTGTCCAGAGCTCTTCCTATGAAGCATTGAATGTTATCAGAGAGTCGATAAAGGCAAAACTTGTTGAAGAAAACGTTGTCCAGGAAAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

48.27

Weight (kDa)

5.36

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 777
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 354, 821
AclI AACGTT 1 cut(s) 1272
AclWI GGATC 4 cut(s) 93, 191, 695, 1140
AfaI GTAC 2 cut(s) 182, 482
AgsI TTSAA 9 cut(s) 271, 385, 663, 827, 1028, 1154, 1189, 1228, 1265
AjnI CCWGG 3 cut(s) 93, 1068, 1278
AluBI AGCT 8 cut(s) 625, 646, 676, 750, 840, 966, 1031, 1209
AluI AGCT 8 cut(s) 625, 646, 676, 750, 840, 966, 1031, 1209
Alw21I GWGCWC 2 cut(s) 21, 1211
Alw26I GTCTC 2 cut(s) 713, 737
AlwI GGATC 4 cut(s) 93, 191, 695, 1140
Ama87I CYCGRG 3 cut(s) 225, 476, 971
AoxI GGCC 1 cut(s) 246
ApaI GGGCCC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 619, 622, 837
Asp700I GAANNNNTTC 3 cut(s) 44, 948, 1062
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 4 cut(s) 246, 247, 327, 604
AsuC2I CCSGG 4 cut(s) 226, 227, 972, 973
AsuHPI GGTGA 4 cut(s) 83, 928, 960, 1015
AvaI CYCGRG 3 cut(s) 225, 476, 971
AvaII GGWCC 2 cut(s) 327, 604
BaeGI GKGCMC 2 cut(s) 250, 1110
BanII GRGCYC 2 cut(s) 250, 1211
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 2 cut(s) 21, 1211
BbvI GCAGC 3 cut(s) 631, 634, 849
BccI CCATC 3 cut(s) 208, 801, 994
BciT130I CCWGG 3 cut(s) 95, 1070, 1280
BclI TGATCA 1 cut(s) 918
BcnI CCSGG 4 cut(s) 226, 227, 972, 973
BcoDI GTCTC 2 cut(s) 713, 737
BfaI CTAG 2 cut(s) 747, 1170
BfmI CTRYAG 1 cut(s) 801
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 3 cut(s) 620, 623, 838
BlsI GCNGC 3 cut(s) 621, 624, 839
Bme1390I CCNGG 7 cut(s) 95, 226, 227, 972, 973, 1070, 1280
Bme18I GGWCC 2 cut(s) 327, 604
BmeT110I CYCGRG 3 cut(s) 225, 476, 971
BmgT120I GGNCC 4 cut(s) 246, 247, 327, 604
BmiI GGNNCC 3 cut(s) 247, 248, 249
BmrFI CCNGG 7 cut(s) 95, 226, 227, 972, 973, 1070, 1280
BmsI GCATC 5 cut(s) 52, 763, 1055, 1147, 1186
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 2 cut(s) 276, 1146
BpuEI CTTGAG 2 cut(s) 227, 613
BpuMI CCSGG 4 cut(s) 226, 227, 972, 973
BsaAI YACGTR 1 cut(s) 484
BsaJI CCNNGG 4 cut(s) 225, 240, 971, 972
Bse1I ACTGG 1 cut(s) 1163
Bse3DI GCAATG 4 cut(s) 257, 433, 466, 823
BseBI CCWGG 3 cut(s) 95, 1070, 1280
BseDI CCNNGG 4 cut(s) 225, 240, 971, 972
BseGI GGATG 2 cut(s) 156, 221
BseMI GCAATG 4 cut(s) 257, 433, 466, 823
BseMII CTCAG 2 cut(s) 72, 693
BseNI ACTGG 1 cut(s) 1163
BseSI GKGCMC 2 cut(s) 250, 1110
BseXI GCAGC 3 cut(s) 631, 634, 849
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 21, 1211
BsiHKCI CYCGRG 3 cut(s) 225, 476, 971
BsiSI CCGG 2 cut(s) 226, 972
BsmAI GTCTC 2 cut(s) 713, 737
BsmI GAATGC 3 cut(s) 169, 839, 884
BsnI GGCC 1 cut(s) 248
BsoBI CYCGRG 3 cut(s) 225, 476, 971
Bsp120I GGGCCC 1 cut(s) 246
Bsp1286I GDGCHC 4 cut(s) 21, 250, 1110, 1211
Bsp143I GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
BspACI CCGC 2 cut(s) 354, 821
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 73, 692
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 247, 248, 249
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 4 cut(s) 93, 191, 695, 1140
BspQI GCTCTTC 2 cut(s) 567, 1216
BsrDI GCAATG 4 cut(s) 257, 433, 466, 823
BsrI ACTGG 1 cut(s) 1163
BssECI CCNNGG 4 cut(s) 225, 240, 971, 972
BssMI GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
Bst2UI CCWGG 3 cut(s) 95, 1070, 1280
Bst4CI ACNGT 5 cut(s) 327, 534, 641, 718, 790
Bst6I CTCTTC 4 cut(s) 21, 567, 887, 1216
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 2 cut(s) 81, 679
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 156, 221
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 6 cut(s) 88, 199, 582, 703, 921, 1148
BstMAI GTCTC 2 cut(s) 713, 737
BstMBI GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
BstMWI GCNNNNNNNGC 2 cut(s) 245, 616
BstNI CCWGG 3 cut(s) 95, 1070, 1280
BstSCI CCNGG 7 cut(s) 93, 224, 225, 970, 971, 1068, 1278
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 2 cut(s) 250, 1110
BstSNI TACGTA 1 cut(s) 484
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 631, 634, 849
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 2 cut(s) 85, 1145
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 2 cut(s) 85, 1145
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 156, 221
BtsI GCAGTG 2 cut(s) 402, 1110
BtsIMutI CAGTG 7 cut(s) 402, 454, 575, 687, 714, 1110, 1170
Cac8I GCNNGC 1 cut(s) 927
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 4 cut(s) 246, 247, 327, 604
Cfr9I CCCGGG 2 cut(s) 225, 971
Csp6I GTAC 2 cut(s) 181, 481
CspCI CAANNNNNGTGG 2 cut(s) 1099, 1134
CviAII CATG 1 cut(s) 148
CviQI GTAC 2 cut(s) 181, 481
DdeI CTNAG 2 cut(s) 81, 679
DpnI GATC 6 cut(s) 87, 198, 581, 702, 920, 1147
DpnII GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
Eam1104I CTCTTC 4 cut(s) 21, 567, 887, 1216
EarI CTCTTC 4 cut(s) 21, 567, 887, 1216
Ecl136II GAGCTC 1 cut(s) 1209
Eco105I TACGTA 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 250, 1211
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 327, 604
Eco53kI GAGCTC 1 cut(s) 1209
Eco88I CYCGRG 3 cut(s) 225, 476, 971
EcoICRI GAGCTC 1 cut(s) 1209
EcoO109I RGGNCCY 2 cut(s) 246, 247
EcoRII CCWGG 3 cut(s) 93, 1068, 1278
EcoRV GATATC 1 cut(s) 434
EcoT22I ATGCAT 1 cut(s) 1129
EcoT38I GRGCYC 2 cut(s) 250, 1211
FaeI CATG 1 cut(s) 151
FatI CATG 1 cut(s) 147
FauNDI CATATG 1 cut(s) 1079
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 3 cut(s) 620, 623, 838
FokI GGATG 2 cut(s) 143, 208
FriOI GRGCYC 2 cut(s) 250, 1211
Fsp4HI GCNGC 3 cut(s) 620, 623, 838
FspBI CTAG 2 cut(s) 747, 1170
FspI TGCGCA 1 cut(s) 777
GlaI GCGC 1 cut(s) 777
GluI GCNGC 3 cut(s) 620, 623, 838
GsuI CTGGAG 2 cut(s) 276, 1146
HaeIII GGCC 1 cut(s) 248
HapII CCGG 2 cut(s) 226, 972
HhaI GCGC 1 cut(s) 778
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 4 cut(s) 106, 305, 349, 1241
HpaII CCGG 2 cut(s) 226, 972
HphI GGTGA 4 cut(s) 83, 928, 960, 1015
Hpy166II GTNNAC 3 cut(s) 139, 330, 502
Hpy188I TCNGA 4 cut(s) 523, 941, 1238, 1292
Hpy188III TCNNGA 7 cut(s) 103, 160, 293, 491, 710, 1097, 1204
Hpy8I GTNNAC 3 cut(s) 139, 330, 502
HpyAV CCTTC 3 cut(s) 994, 998, 1027
HpyCH4III ACNGT 5 cut(s) 327, 534, 641, 718, 790
HpyCH4IV ACGT 2 cut(s) 483, 1272
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 616
HpyF3I CTNAG 2 cut(s) 81, 679
HpySE526I ACGT 2 cut(s) 483, 1272
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 776
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
LguI GCTCTTC 2 cut(s) 567, 1216
LmnI GCTCC 2 cut(s) 56, 1165
Lsp1109I GCAGC 3 cut(s) 631, 634, 849
LweI GCATC 5 cut(s) 52, 763, 1055, 1147, 1186
MaeI CTAG 2 cut(s) 747, 1170
MaeII ACGT 2 cut(s) 483, 1272
MaeIII GTNAC 2 cut(s) 754, 1003
MalI GATC 6 cut(s) 87, 198, 581, 702, 920, 1147
MboI GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 2 cut(s) 85, 1145
MhlI GDGCHC 4 cut(s) 21, 250, 1110, 1211
MluCI AATT 6 cut(s) 375, 437, 514, 726, 1023, 1062
MlyI GAGTC 3 cut(s) 100, 314, 1250
MmeI TCCRAC 1 cut(s) 1016
MnlI CCTC 7 cut(s) 76, 155, 181, 597, 678, 895, 950
Mph1103I ATGCAT 1 cut(s) 1129
MroXI GAANNNNTTC 3 cut(s) 44, 948, 1062
MseI TTAA 4 cut(s) 77, 440, 669, 1122
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 226, 972
MspR9I CCNGG 7 cut(s) 95, 226, 227, 972, 973, 1070, 1280
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 3 cut(s) 169, 839, 884
MvaI CCWGG 3 cut(s) 95, 1070, 1280
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 245, 616
NciI CCSGG 4 cut(s) 226, 227, 972, 973
NdeI CATATG 1 cut(s) 1079
NdeII GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 3 cut(s) 247, 248, 249
NmuCI GTSAC 2 cut(s) 754, 1003
NsbI TGCGCA 1 cut(s) 777
NsiI ATGCAT 1 cut(s) 1129
PciSI GCTCTTC 2 cut(s) 567, 1216
PctI GAATGC 3 cut(s) 169, 839, 884
PdmI GAANNNNTTC 3 cut(s) 44, 948, 1062
PfeI GAWTC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 602
PfoI TCCNGGA 2 cut(s) 1068, 1278
PkrI GCNGC 3 cut(s) 621, 624, 839
PleI GAGTC 3 cut(s) 100, 313, 1249
PpsI GAGTC 3 cut(s) 100, 313, 1249
Ppu21I YACGTR 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 1211
Psp1406I AACGTT 1 cut(s) 1272
Psp6I CCWGG 3 cut(s) 93, 1068, 1278
PspGI CCWGG 3 cut(s) 93, 1068, 1278
PspN4I GGNNCC 3 cut(s) 247, 248, 249
PspOMI GGGCCC 1 cut(s) 246
PspPI GGNCC 4 cut(s) 246, 247, 327, 604
PstI CTGCAG 1 cut(s) 805
PsuI RGATCY 2 cut(s) 85, 1145
PsyI GACNNNGTC 1 cut(s) 602
RsaI GTAC 2 cut(s) 182, 482
RsaNI GTAC 2 cut(s) 181, 481
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 1211
SapI GCTCTTC 2 cut(s) 567, 1216
SaqAI TTAA 4 cut(s) 77, 440, 669, 1122
SatI GCNGC 3 cut(s) 620, 623, 838
Sau3AI GATC 6 cut(s) 85, 196, 579, 700, 918, 1145
Sau96I GGNCC 4 cut(s) 246, 247, 327, 604
SchI GAGTC 3 cut(s) 100, 314, 1250
ScrFI CCNGG 7 cut(s) 95, 226, 227, 972, 973, 1070, 1280
SduI GDGCHC 4 cut(s) 21, 250, 1110, 1211
SfaNI GCATC 5 cut(s) 52, 763, 1055, 1147, 1186
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 2 cut(s) 327, 604
SmaI CCCGGG 2 cut(s) 227, 973
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 206, 628
SmoI CTYRAG 2 cut(s) 206, 628
SnaBI TACGTA 1 cut(s) 484
Sse9I AATT 6 cut(s) 375, 437, 514, 726, 1023, 1062
SsiI CCGC 2 cut(s) 354, 821
SspMI CTAG 2 cut(s) 747, 1170
SstI GAGCTC 1 cut(s) 1211
StyD4I CCNGG 7 cut(s) 93, 224, 225, 970, 971, 1068, 1278
TaaI ACNGT 5 cut(s) 327, 534, 641, 718, 790
TaiI ACGT 2 cut(s) 486, 1275
TaqI TCGA 2 cut(s) 711, 1244
TasI AATT 6 cut(s) 375, 437, 514, 726, 1023, 1062
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 4 cut(s) 77, 440, 669, 1122
Tru9I TTAA 4 cut(s) 77, 440, 669, 1122
TscAI CASTG 7 cut(s) 409, 454, 582, 687, 721, 1117, 1170
TseFI GTSAC 2 cut(s) 754, 1003
TseI GCWGC 3 cut(s) 619, 622, 837
Tsp45I GTSAC 2 cut(s) 754, 1003
TspDTI ATGAA 4 cut(s) 846, 941, 1009, 1233
TspGWI ACGGA 1 cut(s) 1138
TspMI CCCGGG 2 cut(s) 225, 971
TspRI CASTG 7 cut(s) 409, 454, 582, 687, 721, 1117, 1170
Tth111I GACNNNGTC 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 327, 604
XmaI CCCGGG 2 cut(s) 225, 971
XmnI GAANNNNTTC 3 cut(s) 44, 948, 1062
XspI CTAG 2 cut(s) 747, 1170
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.