Rroxscaffold_7G00204550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000526
Physical Location & Seq
Reverse (-)
54003008 .. 54004227
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204550.1

Sequence Viewer

Length: 393 bp
ATGCTCGGTCTTCCCCCGAGAGTCCATGGACATCCGAACACCGAAGAGAATGAATACGAAGAAGGTGTAGTGCCGGAGATGAAATTTGTGTTGACCAAGGAAGACGTAACGGTAGACCGGAGCACCAGCTACTCGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTACCGGCCTCTACAACATTGCTATTTCTGGTCTCAATGATGCCTTGTGGGAAAGAATTCATTGCCTGTGTCTTAAAATGGAAATTAGAGCATTAGAGTTAACAATTGTTTGGTATTTTTGGAGTAAAGTGGAGAACAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.08

Weight (kDa)

5.07

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 189
AcsI RAATTY 2 cut(s) 83, 303
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 2 cut(s) 145, 239
AjnI CCWGG 1 cut(s) 164
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 214, 284
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 83, 303
Asp700I GAANNNNTTC 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 16
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 2, 108
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 214, 284
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 2 cut(s) 2, 108
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 25, 96, 165
BsaWI WCCGGW 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 264, 307
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 25, 96, 165
BseGI GGATG 1 cut(s) 31
BseMI GCAATG 2 cut(s) 264, 307
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 3 cut(s) 74, 118, 252
BsmAI GTCTC 2 cut(s) 214, 284
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 264, 307
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 25, 96, 165
BssT1I CCWWGG 2 cut(s) 25, 96
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 39, 234
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 214, 284
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 2, 108
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 251
Csp6I GTAC 1 cut(s) 249
CviAII CATG 3 cut(s) 26, 175, 390
CviJI RGCY 3 cut(s) 129, 159, 255
CviKI_1 RGCY 3 cut(s) 129, 159, 255
CviQI GTAC 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 39, 234
EarI CTCTTC 2 cut(s) 39, 234
Eco130I CCWWGG 2 cut(s) 25, 96
Eco31I GGTCTC 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 25, 96
ErhI CCWWGG 2 cut(s) 25, 96
FaeI CATG 3 cut(s) 29, 178, 393
FaiI YATR 4 cut(s) 27, 176, 194, 391
FatI CATG 3 cut(s) 25, 174, 389
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 255
HapII CCGG 3 cut(s) 74, 118, 252
Hin1II CATG 3 cut(s) 29, 178, 393
HincII GTYRAC 2 cut(s) 93, 348
HindII GTYRAC 2 cut(s) 93, 348
HinfI GANTC 2 cut(s) 21, 179
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 3 cut(s) 74, 118, 252
Hpy166II GTNNAC 3 cut(s) 93, 115, 348
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 3 cut(s) 93, 115, 348
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 29, 178, 393
KpnI GGTACC 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 8 cut(s) 87, 131, 139, 151, 178, 261, 265, 326
LweI GCATC 1 cut(s) 277
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 4 cut(s) 56, 71, 113, 251
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 5 cut(s) 83, 234, 303, 330, 351
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 2 cut(s) 222, 266
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 3 cut(s) 233, 321, 347
MspI CCGG 3 cut(s) 74, 118, 252
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 166
NcoI CCATGG 1 cut(s) 25
NlaIII CATG 3 cut(s) 29, 178, 393
NlaIV GGNNCC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 233, 321, 347
SatI GCNGC 1 cut(s) 190
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 67, 108, 131, 233
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 5 cut(s) 83, 234, 303, 330, 351
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 25, 96
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 108
TasI AATT 5 cut(s) 83, 234, 303, 330, 351
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 233, 321, 347
Tru9I TTAA 3 cut(s) 233, 321, 347
TspDTI ATGAA 4 cut(s) 66, 95, 165, 296
XapI RAATTY 2 cut(s) 83, 303
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 172
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.