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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 134, 3447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2104 |
| AatII | GACGTC | 1 cut(s) | 3203 |
| Acc36I | ACCTGC | 4 cut(s) | 2151, 2636, 2845, 4322 |
| AccB1I | GGYRCC | 2 cut(s) | 1027, 4592 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2679 |
| AccBSI | CCGCTC | 1 cut(s) | 3070 |
| AccI | GTMKAC | 3 cut(s) | 902, 5360, 5371 |
| AccII | CGCG | 2 cut(s) | 4927, 5249 |
| AclI | AACGTT | 4 cut(s) | 2022, 2418, 4695, 5290 |
| AcoI | YGGCCR | 2 cut(s) | 1519, 2990 |
| AcsI | RAATTY | 6 cut(s) | 606, 782, 1990, 2932, 3239, 3619 |
| AcvI | CACGTG | 1 cut(s) | 5502 |
| AcyI | GRCGYC | 1 cut(s) | 3200 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 739, 2679, 4394, 4589, 5381 |
| AflII | CTTAAG | 1 cut(s) | 4186 |
| AflIII | ACRYGT | 3 cut(s) | 3222, 4992, 5501 |
| AjiI | CACGTC | 2 cut(s) | 1701, 4993 |
| AjnI | CCWGG | 3 cut(s) | 1537, 2286, 4373 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 179, 211, 324, 356, 471, 503 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1099, 1131 |
| Alw21I | GWGCWC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| Alw44I | GTGCAC | 1 cut(s) | 4002 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1041, 1373, 4532, 5159 |
| Ama87I | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| AoxI | GGCC | 3 cut(s) | 1519, 2849, 2990 |
| ApaLI | GTGCAC | 1 cut(s) | 4002 |
| ApeKI | GCWGC | 9 cut(s) | 982, 1035, 1044, 1741, 2568, 3377, 3753, 3976, 5185 |
| ApoI | RAATTY | 6 cut(s) | 606, 782, 1990, 2932, 3239, 3619 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2898, 2930 |
| AseI | ATTAAT | 3 cut(s) | 2892, 4434, 4773 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 606, 857, 1694, 2732, 3956 |
| AspA2I | CCTAGG | 1 cut(s) | 2255 |
| AspLEI | GCGC | 3 cut(s) | 3218, 3267, 4226 |
| AspS9I | GGNCC | 7 cut(s) | 1798, 2849, 3305, 4082, 4371, 4397, 5222 |
| AsuC2I | CCSGG | 4 cut(s) | 2359, 4546, 4547, 5226 |
| AsuHPI | GGTGA | 9 cut(s) | 9, 1192, 1495, 3264, 4004, 4895, 4903, 4935, 5527 |
| AvaI | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| AvaII | GGWCC | 6 cut(s) | 1798, 3305, 4082, 4371, 4397, 5222 |
| AvrII | CCTAGG | 1 cut(s) | 2255 |
| AxyI | CCTNAGG | 1 cut(s) | 1209 |
| BaeGI | GKGCMC | 1 cut(s) | 4006 |
| BalI | TGGCCA | 1 cut(s) | 1521 |
| BamHI | GGATCC | 1 cut(s) | 769 |
| BanI | GGYRCC | 2 cut(s) | 1027, 4592 |
| BanII | GRGCYC | 3 cut(s) | 696, 823, 4128 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1859, 1891, 5570, 5602 |
| BauI | CACGAG | 2 cut(s) | 2093, 4109 |
| BbrPI | CACGTG | 1 cut(s) | 5502 |
| BbsI | GAAGAC | 6 cut(s) | 2332, 2735, 3323, 3695, 4269, 4328 |
| Bbv12I | GWGCWC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| BbvCI | CCTCAGC | 2 cut(s) | 4154, 5511 |
| BbvI | GCAGC | 9 cut(s) | 994, 1047, 1056, 1728, 2555, 3364, 3765, 3963, 5172 |
| BceAI | ACGGC | 2 cut(s) | 1867, 4372 |
| BciT130I | CCWGG | 3 cut(s) | 1539, 2288, 4375 |
| BciVI | GTATCC | 3 cut(s) | 765, 4608, 5067 |
| BclI | TGATCA | 4 cut(s) | 1485, 3387, 3603, 4176 |
| BcnI | CCSGG | 4 cut(s) | 2359, 4546, 4547, 5226 |
| BfmI | CTRYAG | 4 cut(s) | 886, 1042, 1955, 3496 |
| BfoI | RGCGCY | 2 cut(s) | 3268, 4227 |
| BfrI | CTTAAG | 1 cut(s) | 4186 |
| BfuAI | ACCTGC | 4 cut(s) | 2151, 2636, 2845, 4322 |
| BfuI | GTATCC | 3 cut(s) | 765, 4608, 5067 |
| BlnI | CCTAGG | 1 cut(s) | 2255 |
| BlpI | GCTNAGC | 2 cut(s) | 588, 690 |
| BmcAI | AGTACT | 2 cut(s) | 1282, 3567 |
| Bme1390I | CCNGG | 7 cut(s) | 1539, 2288, 2359, 4375, 4546, 4547, 5226 |
| Bme18I | GGWCC | 6 cut(s) | 1798, 3305, 4082, 4371, 4397, 5222 |
| BmeT110I | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| BmgBI | CACGTC | 2 cut(s) | 1701, 4993 |
| BmgT120I | GGNCC | 7 cut(s) | 1798, 2849, 3305, 4082, 4371, 4397, 5222 |
| BmiI | GGNNCC | 7 cut(s) | 771, 1029, 1652, 2671, 4041, 4399, 4594 |
| BmrFI | CCNGG | 7 cut(s) | 1539, 2288, 2359, 4375, 4546, 4547, 5226 |
| BpiI | GAAGAC | 6 cut(s) | 2332, 2735, 3323, 3695, 4269, 4328 |
| BpmI | CTGGAG | 5 cut(s) | 807, 1710, 2817, 3324, 4882 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1272, 4154, 5511, 5523 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 588, 690 |
| BpuEI | CTTGAG | 4 cut(s) | 3274, 3479, 5255, 5673 |
| BpuMI | CCSGG | 4 cut(s) | 2359, 4546, 4547, 5226 |
| Bsa29I | ATCGAT | 2 cut(s) | 3735, 4074 |
| BsaAI | YACGTR | 2 cut(s) | 2118, 5502 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 1 cut(s) | 3200 |
| BsaI | GGTCTC | 2 cut(s) | 4309, 5137 |
| BsaWI | WCCGGW | 3 cut(s) | 815, 4945, 5168 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 805, 835, 1708, 1738, 2674, 2704, 4131, 4161 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 739, 2679, 4394, 4589, 5381 |
| Bse118I | RCCGGY | 1 cut(s) | 1177 |
| Bse1I | ACTGG | 6 cut(s) | 63, 557, 1433, 1727, 4094, 4495 |
| Bse21I | CCTNAGG | 1 cut(s) | 1209 |
| Bse3DI | GCAATG | 3 cut(s) | 1006, 1258, 3561 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseBI | CCWGG | 3 cut(s) | 1539, 2288, 4375 |
| BseCI | ATCGAT | 2 cut(s) | 3735, 4074 |
| BseGI | GGATG | 6 cut(s) | 712, 1081, 1113, 1204, 3396, 5418 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 739, 2679, 4394, 4589, 5381 |
| BseMI | GCAATG | 3 cut(s) | 1006, 1258, 3561 |
| BseNI | ACTGG | 6 cut(s) | 63, 557, 1433, 1727, 4094, 4495 |
| BseRI | GAGGAG | 5 cut(s) | 1490, 2958, 3850, 4364, 4898 |
| BseSI | GKGCMC | 1 cut(s) | 4006 |
| BseX3I | CGGCCG | 1 cut(s) | 2990 |
| BseXI | GCAGC | 9 cut(s) | 994, 1047, 1056, 1728, 2555, 3364, 3765, 3963, 5172 |
| BsgI | GTGCAG | 3 cut(s) | 1848, 2179, 2664 |
| Bsh1236I | CGCG | 2 cut(s) | 4927, 5249 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2993 |
| BshFI | GGCC | 3 cut(s) | 1521, 2851, 2992 |
| BshNI | GGYRCC | 2 cut(s) | 1027, 4592 |
| BshVI | ATCGAT | 2 cut(s) | 3735, 4074 |
| BsiEI | CGRYCG | 1 cut(s) | 2993 |
| BsiHKAI | GWGCWC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| BsiSI | CCGG | 7 cut(s) | 816, 1178, 2359, 4546, 4946, 5169, 5225 |
| BslFI | GGGAC | 4 cut(s) | 1931, 4329, 4383, 5068 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 739, 2679, 4394, 4589, 5381 |
| BsmBI | CGTCTC | 4 cut(s) | 1247, 1904, 3191, 3894 |
| BsmFI | GGGAC | 4 cut(s) | 1931, 4329, 4383, 5068 |
| BsmI | GAATGC | 5 cut(s) | 1406, 1694, 1696, 2076, 5070 |
| BsnI | GGCC | 3 cut(s) | 1521, 2851, 2992 |
| Bso31I | GGTCTC | 2 cut(s) | 4309, 5137 |
| BsoBI | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| Bsp1286I | GDGCHC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| Bsp1407I | TGTACA | 2 cut(s) | 3927, 4936 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 588, 690 |
| Bsp19I | CCATGG | 1 cut(s) | 1522 |
| BspANI | GGCC | 3 cut(s) | 1521, 2851, 2992 |
| BspDI | ATCGAT | 2 cut(s) | 3735, 4074 |
| BspFNI | CGCG | 2 cut(s) | 4927, 5249 |
| BspHI | TCATGA | 2 cut(s) | 4474, 4843 |
| BspLI | GGNNCC | 7 cut(s) | 771, 1029, 1652, 2671, 4041, 4399, 4594 |
| BspMAI | CTGCAG | 3 cut(s) | 890, 1046, 1959 |
| BspMI | ACCTGC | 4 cut(s) | 2151, 2636, 2845, 4322 |
| BspQI | GCTCTTC | 4 cut(s) | 1134, 1325, 3447, 4443 |
| BspT107I | GGYRCC | 2 cut(s) | 1027, 4592 |
| BspTI | CTTAAG | 1 cut(s) | 4186 |
| BspTNI | GGTCTC | 2 cut(s) | 4309, 5137 |
| BsrBI | CCGCTC | 1 cut(s) | 3070 |
| BsrDI | GCAATG | 3 cut(s) | 1006, 1258, 3561 |
| BsrFI | RCCGGY | 1 cut(s) | 1177 |
| BsrGI | TGTACA | 2 cut(s) | 3927, 4936 |
| BsrI | ACTGG | 6 cut(s) | 63, 557, 1433, 1727, 4094, 4495 |
| BssAI | RCCGGY | 1 cut(s) | 1177 |
| BssNAI | GTATAC | 1 cut(s) | 5361 |
| BssNI | GRCGYC | 1 cut(s) | 3200 |
| BssSI | CACGAG | 2 cut(s) | 2093, 4109 |
| BssT1I | CCWWGG | 5 cut(s) | 1048, 1522, 1654, 2255, 3308 |
| Bst1107I | GTATAC | 1 cut(s) | 5361 |
| Bst2BI | CACGAG | 2 cut(s) | 2093, 4109 |
| Bst2UI | CCWGG | 3 cut(s) | 1539, 2288, 4375 |
| BstACI | GRCGYC | 1 cut(s) | 3200 |
| BstAFI | CTTAAG | 1 cut(s) | 4186 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1041 |
| BstAUI | TGTACA | 2 cut(s) | 3927, 4936 |
| BstBAI | YACGTR | 2 cut(s) | 2118, 5502 |
| BstC8I | GCNNGC | 5 cut(s) | 223, 1746, 3578, 4492, 4503 |
| BstDSI | CCRYGG | 2 cut(s) | 1522, 2678 |
| BstEII | GGTNACC | 2 cut(s) | 3329, 4334 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4587 |
| BstF5I | GGATG | 6 cut(s) | 712, 1081, 1113, 1204, 3396, 5418 |
| BstFNI | CGCG | 2 cut(s) | 4927, 5249 |
| BstH2I | RGCGCY | 2 cut(s) | 3268, 4227 |
| BstHHI | GCGC | 3 cut(s) | 3218, 3267, 4226 |
| BstMCI | CGRYCG | 1 cut(s) | 2993 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1041, 1044, 1050, 2082, 2837, 3090, 3463, 5236 |
| BstNI | CCWGG | 3 cut(s) | 1539, 2288, 4375 |
| BstNSI | RCATGY | 4 cut(s) | 225, 2581, 3580, 4331 |
| BstPI | GGTNACC | 2 cut(s) | 3329, 4334 |
| BstSCI | CCNGG | 7 cut(s) | 1537, 2286, 2357, 4373, 4544, 4545, 5224 |
| BstSFI | CTRYAG | 4 cut(s) | 886, 1042, 1955, 3496 |
| BstSLI | GKGCMC | 1 cut(s) | 4006 |
| BstSNI | TACGTA | 1 cut(s) | 2118 |
| BstUI | CGCG | 2 cut(s) | 4927, 5249 |
| BstV1I | GCAGC | 9 cut(s) | 994, 1047, 1056, 1728, 2555, 3364, 3765, 3963, 5172 |
| BstV2I | GAAGAC | 6 cut(s) | 2332, 2735, 3323, 3695, 4269, 4328 |
| BstX2I | RGATCY | 5 cut(s) | 310, 658, 769, 1267, 5548 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1567 |
| BstYI | RGATCY | 5 cut(s) | 310, 658, 769, 1267, 5548 |
| BstZ17I | GTATAC | 1 cut(s) | 5361 |
| BstZI | CGGCCG | 1 cut(s) | 2990 |
| Bsu15I | ATCGAT | 2 cut(s) | 3735, 4074 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1209 |
| BsuI | GTATCC | 3 cut(s) | 765, 4608, 5067 |
| BsuRI | GGCC | 3 cut(s) | 1521, 2851, 2992 |
| BsuTUI | ATCGAT | 2 cut(s) | 3735, 4074 |
| BtgI | CCRYGG | 2 cut(s) | 1522, 2678 |
| BtgZI | GCGATG | 2 cut(s) | 2125, 4195 |
| BtrI | CACGTC | 2 cut(s) | 1701, 4993 |
| BtsCI | GGATG | 6 cut(s) | 712, 1081, 1113, 1204, 3396, 5418 |
| BtsI | GCAGTG | 4 cut(s) | 895, 1039, 2162, 3288 |
| BtsIMutI | CAGTG | 9 cut(s) | 895, 1039, 1440, 1734, 2162, 3157, 3288, 3397, 3635 |
| BveI | ACCTGC | 4 cut(s) | 2151, 2636, 2845, 4322 |
| Cac8I | GCNNGC | 5 cut(s) | 223, 1746, 3578, 4492, 4503 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1041, 1373, 4532, 5159 |
| CciI | TCATGA | 2 cut(s) | 4474, 4843 |
| CfoI | GCGC | 3 cut(s) | 3218, 3267, 4226 |
| Cfr10I | RCCGGY | 1 cut(s) | 1177 |
| Cfr13I | GGNCC | 7 cut(s) | 1798, 2849, 3305, 4082, 4371, 4397, 5222 |
| Cfr9I | CCCGGG | 1 cut(s) | 4545 |
| ClaI | ATCGAT | 2 cut(s) | 3735, 4074 |
| CseI | GACGC | 4 cut(s) | 1502, 3369, 3569, 5131 |
| DraI | TTTAAA | 1 cut(s) | 3844 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2104 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2104 |
| EaeI | YGGCCR | 2 cut(s) | 1519, 2990 |
| EagI | CGGCCG | 1 cut(s) | 2990 |
| EciI | GGCGGA | 1 cut(s) | 4037 |
| Ecl136II | GAGCTC | 3 cut(s) | 694, 821, 4126 |
| EclXI | CGGCCG | 1 cut(s) | 2990 |
| Eco105I | TACGTA | 1 cut(s) | 2118 |
| Eco130I | CCWWGG | 5 cut(s) | 1048, 1522, 1654, 2255, 3308 |
| Eco24I | GRGCYC | 3 cut(s) | 696, 823, 4128 |
| Eco31I | GGTCTC | 2 cut(s) | 4309, 5137 |
| Eco32I | GATATC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 6 cut(s) | 1798, 3305, 4082, 4371, 4397, 5222 |
| Eco52I | CGGCCG | 1 cut(s) | 2990 |
| Eco53kI | GAGCTC | 3 cut(s) | 694, 821, 4126 |
| Eco72I | CACGTG | 1 cut(s) | 5502 |
| Eco81I | CCTNAGG | 1 cut(s) | 1209 |
| Eco88I | CYCGRG | 4 cut(s) | 2768, 4127, 4346, 4545 |
| Eco91I | GGTNACC | 2 cut(s) | 3329, 4334 |
| EcoICRI | GAGCTC | 3 cut(s) | 694, 821, 4126 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4587 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2849, 4371 |
| EcoO65I | GGTNACC | 2 cut(s) | 3329, 4334 |
| EcoRI | GAATTC | 4 cut(s) | 606, 1990, 2932, 3619 |
| EcoRII | CCWGG | 3 cut(s) | 1537, 2286, 4373 |
| EcoRV | GATATC | 1 cut(s) | 805 |
| EcoT14I | CCWWGG | 5 cut(s) | 1048, 1522, 1654, 2255, 3308 |
| EcoT22I | ATGCAT | 2 cut(s) | 1696, 2078 |
| EcoT38I | GRGCYC | 3 cut(s) | 696, 823, 4128 |
| ErhI | CCWWGG | 5 cut(s) | 1048, 1522, 1654, 2255, 3308 |
| Esp3I | CGTCTC | 4 cut(s) | 1247, 1904, 3191, 3894 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1176, 1208, 2178, 2210, 4278, 4310 |
| FaqI | GGGAC | 4 cut(s) | 1931, 4329, 4383, 5068 |
| FauI | CCCGC | 1 cut(s) | 2551 |
| FauNDI | CATATG | 1 cut(s) | 2503 |
| FbaI | TGATCA | 4 cut(s) | 1485, 3387, 3603, 4176 |
| FblI | GTMKAC | 3 cut(s) | 902, 5360, 5371 |
| FokI | GGATG | 6 cut(s) | 719, 1068, 1120, 1191, 3383, 5425 |
| FriOI | GRGCYC | 3 cut(s) | 696, 823, 4128 |
| GlaI | GCGC | 3 cut(s) | 3217, 3266, 4225 |
| GsuI | CTGGAG | 5 cut(s) | 807, 1710, 2817, 3324, 4882 |
| HaeII | RGCGCY | 2 cut(s) | 3268, 4227 |
| HaeIII | GGCC | 3 cut(s) | 1521, 2851, 2992 |
| HapII | CCGG | 7 cut(s) | 816, 1178, 2359, 4546, 4946, 5169, 5225 |
| HgaI | GACGC | 4 cut(s) | 1502, 3369, 3569, 5131 |
| HhaI | GCGC | 3 cut(s) | 3218, 3267, 4226 |
| Hin1I | GRCGYC | 1 cut(s) | 3200 |
| Hin6I | GCGC | 3 cut(s) | 3216, 3265, 4224 |
| HinP1I | GCGC | 3 cut(s) | 3216, 3265, 4224 |
| HincII | GTYRAC | 5 cut(s) | 651, 1075, 3204, 3584, 5317 |
| HindII | GTYRAC | 5 cut(s) | 651, 1075, 3204, 3584, 5317 |
| HindIII | AAGCTT | 4 cut(s) | 3800, 3955, 4488, 5483 |
| HpaII | CCGG | 7 cut(s) | 816, 1178, 2359, 4546, 4946, 5169, 5225 |
| HphI | GGTGA | 9 cut(s) | 9, 1192, 1495, 3264, 4004, 4895, 4903, 4935, 5527 |
| Hpy99I | CGWCG | 9 cut(s) | 55, 615, 982, 3385, 4412, 4967, 4994, 5147, 5327 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1041, 1044, 1050, 2082, 2837, 3090, 3463, 5236 |
| Hsp92I | GRCGYC | 1 cut(s) | 3200 |
| HspAI | GCGC | 3 cut(s) | 3216, 3265, 4224 |
| Ksp22I | TGATCA | 4 cut(s) | 1485, 3387, 3603, 4176 |
| LguI | GCTCTTC | 4 cut(s) | 1134, 1325, 3447, 4443 |
| Lsp1109I | GCAGC | 9 cut(s) | 994, 1047, 1056, 1728, 2555, 3364, 3765, 3963, 5172 |
| MbiI | CCGCTC | 1 cut(s) | 3070 |
| MflI | RGATCY | 5 cut(s) | 310, 658, 769, 1267, 5548 |
| MhlI | GDGCHC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| MlsI | TGGCCA | 1 cut(s) | 1521 |
| MluNI | TGGCCA | 1 cut(s) | 1521 |
| MlyI | GAGTC | 7 cut(s) | 887, 1355, 1960, 3598, 4925, 4977, 5377 |
| MmeI | TCCRAC | 7 cut(s) | 145, 593, 874, 1157, 2946, 4586, 5084 |
| Mox20I | TGGCCA | 1 cut(s) | 1521 |
| Mph1103I | ATGCAT | 2 cut(s) | 1696, 2078 |
| MroXI | GAANNNNTTC | 5 cut(s) | 606, 857, 1694, 2732, 3956 |
| MscI | TGGCCA | 1 cut(s) | 1521 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1565, 2463 |
| Msp20I | TGGCCA | 1 cut(s) | 1521 |
| MspA1I | CMGCKG | 2 cut(s) | 689, 3278 |
| MspCI | CTTAAG | 1 cut(s) | 4186 |
| MspI | CCGG | 7 cut(s) | 816, 1178, 2359, 4546, 4946, 5169, 5225 |
| MspR9I | CCNGG | 7 cut(s) | 1539, 2288, 2359, 4375, 4546, 4547, 5226 |
| Mva1269I | GAATGC | 5 cut(s) | 1406, 1694, 1696, 2076, 5070 |
| MvaI | CCWGG | 3 cut(s) | 1539, 2288, 4375 |
| MvnI | CGCG | 2 cut(s) | 4927, 5249 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1041, 1044, 1050, 2082, 2837, 3090, 3463, 5236 |
| NciI | CCSGG | 4 cut(s) | 2359, 4546, 4547, 5226 |
| NcoI | CCATGG | 1 cut(s) | 1522 |
| NdeI | CATATG | 1 cut(s) | 2503 |
| NlaIV | GGNNCC | 7 cut(s) | 771, 1029, 1652, 2671, 4041, 4399, 4594 |
| NmuCI | GTSAC | 5 cut(s) | 1163, 1321, 2095, 3392, 4883 |
| NsiI | ATGCAT | 2 cut(s) | 1696, 2078 |
| NspI | RCATGY | 4 cut(s) | 225, 2581, 3580, 4331 |
| PaeI | GCATGC | 2 cut(s) | 225, 3580 |
| PaeR7I | CTCGAG | 1 cut(s) | 4127 |
| PagI | TCATGA | 2 cut(s) | 4474, 4843 |
| PciSI | GCTCTTC | 4 cut(s) | 1134, 1325, 3447, 4443 |
| PctI | GAATGC | 5 cut(s) | 1406, 1694, 1696, 2076, 5070 |
| PdmI | GAANNNNTTC | 5 cut(s) | 606, 857, 1694, 2732, 3956 |
| PflFI | GACNNNGTC | 1 cut(s) | 4967 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2679 |
| PleI | GAGTC | 7 cut(s) | 886, 1354, 1959, 3597, 4924, 4976, 5376 |
| PmaCI | CACGTG | 1 cut(s) | 5502 |
| PmlI | CACGTG | 1 cut(s) | 5502 |
| PpsI | GAGTC | 7 cut(s) | 886, 1354, 1959, 3597, 4924, 4976, 5376 |
| Ppu21I | YACGTR | 2 cut(s) | 2118, 5502 |
| PpuMI | RGGWCCY | 1 cut(s) | 4371 |
| PshBI | ATTAAT | 3 cut(s) | 2892, 4434, 4773 |
| PsiI | TTATAA | 2 cut(s) | 134, 3447 |
| Psp124BI | GAGCTC | 3 cut(s) | 696, 823, 4128 |
| Psp1406I | AACGTT | 4 cut(s) | 2022, 2418, 4695, 5290 |
| Psp5II | RGGWCCY | 1 cut(s) | 4371 |
| Psp6I | CCWGG | 3 cut(s) | 1537, 2286, 4373 |
| PspCI | CACGTG | 1 cut(s) | 5502 |
| PspEI | GGTNACC | 2 cut(s) | 3329, 4334 |
| PspGI | CCWGG | 3 cut(s) | 1537, 2286, 4373 |
| PspN4I | GGNNCC | 7 cut(s) | 771, 1029, 1652, 2671, 4041, 4399, 4594 |
| PspPI | GGNCC | 7 cut(s) | 1798, 2849, 3305, 4082, 4371, 4397, 5222 |
| PspPPI | RGGWCCY | 1 cut(s) | 4371 |
| PstI | CTGCAG | 3 cut(s) | 890, 1046, 1959 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1041, 1373, 4532, 5159 |
| PsuI | RGATCY | 5 cut(s) | 310, 658, 769, 1267, 5548 |
| PsyI | GACNNNGTC | 1 cut(s) | 4967 |
| PvuII | CAGCTG | 1 cut(s) | 3278 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1565, 2463 |
| SacI | GAGCTC | 3 cut(s) | 696, 823, 4128 |
| SapI | GCTCTTC | 4 cut(s) | 1134, 1325, 3447, 4443 |
| Sau96I | GGNCC | 7 cut(s) | 1798, 2849, 3305, 4082, 4371, 4397, 5222 |
| ScaI | AGTACT | 2 cut(s) | 1282, 3567 |
| SchI | GAGTC | 7 cut(s) | 887, 1355, 1960, 3598, 4925, 4977, 5377 |
| ScrFI | CCNGG | 7 cut(s) | 1539, 2288, 2359, 4375, 4546, 4547, 5226 |
| SduI | GDGCHC | 6 cut(s) | 696, 823, 2381, 4006, 4128, 4659 |
| SfcI | CTRYAG | 4 cut(s) | 886, 1042, 1955, 3496 |
| Sfr274I | CTCGAG | 1 cut(s) | 4127 |
| SinI | GGWCC | 6 cut(s) | 1798, 3305, 4082, 4371, 4397, 5222 |
| SlaI | CTCGAG | 1 cut(s) | 4127 |
| SmaI | CCCGGG | 1 cut(s) | 4547 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1565, 2463 |
| SmlI | CTYRAG | 6 cut(s) | 3253, 3458, 4127, 4186, 5270, 5688 |
| SmoI | CTYRAG | 6 cut(s) | 3253, 3458, 4127, 4186, 5270, 5688 |
| SnaBI | TACGTA | 1 cut(s) | 2118 |
| SphI | GCATGC | 2 cut(s) | 225, 3580 |
| SspI | AATATT | 1 cut(s) | 4811 |
| SstI | GAGCTC | 3 cut(s) | 696, 823, 4128 |
| StyD4I | CCNGG | 7 cut(s) | 1537, 2286, 2357, 4373, 4544, 4545, 5224 |
| StyI | CCWWGG | 5 cut(s) | 1048, 1522, 1654, 2255, 3308 |
| TaqII | GACCGA | 1 cut(s) | 2736 |
| TatI | WGTACW | 6 cut(s) | 1280, 3108, 3565, 3836, 3927, 4936 |
| TauI | GCSGC | 2 cut(s) | 2584, 2995 |
| TscAI | CASTG | 9 cut(s) | 895, 1046, 1440, 1734, 2162, 3157, 3295, 3397, 3635 |
| TseFI | GTSAC | 5 cut(s) | 1163, 1321, 2095, 3392, 4883 |
| TseI | GCWGC | 9 cut(s) | 982, 1035, 1044, 1741, 2568, 3377, 3753, 3976, 5185 |
| Tsp45I | GTSAC | 5 cut(s) | 1163, 1321, 2095, 3392, 4883 |
| TspGWI | ACGGA | 9 cut(s) | 136, 593, 636, 668, 2453, 2667, 4767, 4980, 5369 |
| TspMI | CCCGGG | 1 cut(s) | 4545 |
| TspRI | CASTG | 9 cut(s) | 895, 1046, 1440, 1734, 2162, 3157, 3295, 3397, 3635 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4967 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2679 |
| Vha464I | CTTAAG | 1 cut(s) | 4186 |
| VneI | GTGCAC | 1 cut(s) | 4002 |
| VpaK11BI | GGWCC | 6 cut(s) | 1798, 3305, 4082, 4371, 4397, 5222 |
| VspI | ATTAAT | 3 cut(s) | 2892, 4434, 4773 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4587 |
| XapI | RAATTY | 6 cut(s) | 606, 782, 1990, 2932, 3239, 3619 |
| XbaI | TCTAGA | 1 cut(s) | 1619 |
| XceI | RCATGY | 4 cut(s) | 225, 2581, 3580, 4331 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1046, 4715 |
| XhoI | CTCGAG | 1 cut(s) | 4127 |
| XmaI | CCCGGG | 1 cut(s) | 4545 |
| XmaJI | CCTAGG | 1 cut(s) | 2255 |
| XmiI | GTMKAC | 3 cut(s) | 902, 5360, 5371 |
| XmnI | GAANNNNTTC | 5 cut(s) | 606, 857, 1694, 2732, 3956 |
| ZraI | GACGTC | 1 cut(s) | 3201 |
| ZrmI | AGTACT | 2 cut(s) | 1282, 3567 |
| Zsp2I | ATGCAT | 2 cut(s) | 1696, 2078 |