MD06G1092400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000526
Physical Location & Seq
Forward (+)
22169322 .. 22171129
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1092400.v1.1.491

Sequence Viewer

Length: 459 bp
ATGCAGTCACCAGCCTATCTACCGAGTTGTACCAGAAAGACATACCATTTTCTCATTAAGCTCATACAGAATGCGGAAGTCAATGAATACGAAGAAGGGGTTGAACCAACACTGGAATTTGTGATGACAAAGAAGGACATAACTGGGAGTGGAGCTCCGGCTACTCTGCTGGTTTTTAATAATGAGGTTGGATTTTCCAGGAAGAATATGGATTCGATCTGCAGTGTAGGACGTTCTACAAAGAAGGGGAAGAGACATCAGGGCTTTATTGGAGAAAAAGCTCCACGATTGGCTAGCGTGAATCTTGGTATCTTCATATGCATGCAATGTTCAGGGATCCACATGGCTCCCATAGCAGCATTGATGCAAGCATGCCGATATGGACATTGGGAAGTTGTACAGACCCTCTTGCTCTTCGGATGCAATGTAATTTTTTGTTCTCATTGGTTTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

8.65

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 92 - 115 3.4e-06 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 331, 344
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 2 cut(s) 31, 399
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 61, 155, 281
AluI AGCT 3 cut(s) 61, 155, 281
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 331, 344
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 338, 348
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 354, 410
BmtI GCTAGC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 139, 171
Bse1I ACTGG 2 cut(s) 117, 148
Bse3DI GCAATG 2 cut(s) 332, 430
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 425
BseMI GCAATG 2 cut(s) 332, 430
BseNI ACTGG 2 cut(s) 117, 148
BseXI GCAGC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 2 cut(s) 216, 336
BspACI CCGC 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 338, 348
BspMAI CTGCAG 1 cut(s) 224
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 2 cut(s) 331, 344
BspQI GCTCTTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 332, 430
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 2 cut(s) 117, 148
BssMI GATC 2 cut(s) 216, 336
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 245, 419
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 4 cut(s) 295, 323, 369, 373
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 2 cut(s) 219, 339
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 216, 336
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 325, 375
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 110, 229
Cac8I GCNNGC 4 cut(s) 295, 323, 369, 373
Csp6I GTAC 2 cut(s) 30, 398
CviAII CATG 3 cut(s) 322, 343, 372
CviJI RGCY 8 cut(s) 14, 61, 155, 161, 264, 281, 293, 347
CviKI_1 RGCY 8 cut(s) 14, 61, 155, 161, 264, 281, 293, 347
CviQI GTAC 2 cut(s) 30, 398
DpnI GATC 2 cut(s) 218, 338
DpnII GATC 2 cut(s) 216, 336
Eam1104I CTCTTC 2 cut(s) 245, 419
EarI CTCTTC 2 cut(s) 245, 419
Ecl136II GAGCTC 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 157
FaeI CATG 3 cut(s) 325, 346, 375
FatI CATG 3 cut(s) 321, 342, 371
FauNDI CATATG 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 432
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 357
HapII CCGG 1 cut(s) 158
Hin1II CATG 3 cut(s) 325, 346, 375
HinfI GANTC 2 cut(s) 212, 301
HpaII CCGG 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 89, 127, 238
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 6 cut(s) 4, 222, 321, 325, 367, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 325, 346, 375
Kzo9I GATC 2 cut(s) 216, 336
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 152, 160, 286, 352
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 354, 410
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 6
MalI GATC 2 cut(s) 218, 338
MboI GATC 2 cut(s) 216, 336
MboII GAAGA 5 cut(s) 104, 214, 262, 304, 406
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 116, 429
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 2 cut(s) 178, 416
Mph1103I ATGCAT 1 cut(s) 323
MseI TTAA 2 cut(s) 57, 177
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeI CATATG 1 cut(s) 317
NdeII GATC 2 cut(s) 216, 336
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 3 cut(s) 325, 346, 375
NlaIV GGNNCC 2 cut(s) 338, 348
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 323
NspI RCATGY 2 cut(s) 325, 375
PaeI GCATGC 2 cut(s) 325, 375
PciSI GCTCTTC 1 cut(s) 419
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 212, 301
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 338, 348
PstI CTGCAG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 2 cut(s) 31, 399
RsaNI GTAC 2 cut(s) 30, 398
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 57, 177
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 216, 336
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 157
SetI ASST 5 cut(s) 63, 157, 189, 235, 283
SfaNI GCATC 2 cut(s) 354, 410
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 320
SphI GCATGC 2 cut(s) 325, 375
Sse9I AATT 2 cut(s) 116, 429
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 215
TasI AATT 2 cut(s) 116, 429
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 2 cut(s) 212, 301
Tru1I TTAA 2 cut(s) 57, 177
Tru9I TTAA 2 cut(s) 57, 177
TscAI CASTG 2 cut(s) 117, 229
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 99, 304
TspRI CASTG 2 cut(s) 117, 229
XapI RAATTY 1 cut(s) 116
XceI RCATGY 2 cut(s) 325, 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.