Rmu_sc0001329.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001329.1
OG0000526
Physical Location & Seq
Forward (+)
29614 .. 33038
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001329.1_g000011.1.cds

Sequence Viewer

Length: 564 bp
atgaaatttgtgttgaccaaggaagacataacagagactggagcaccagctactctgttggttttcaataatgaagttggcttttccagggagaacatggattccatttgcggcatattccattctacaaagatggaaaagagacagcagaggttaattgaagagaatggtaccggcctctacaacattgctatttctggtctcaatgatgccttgtgggaaagaattcattgcctgatgaggcctttgaaaggatggcccttgaggatgttgaaagtgaccactaagagggttttgaggcaccccccgagcttcccgctcactagctctaacgctcactcgttccaggcacccccgagcttcctgctcactccttcacggtacccccgagttatcagctcacgccttcccggtaccttcgagcttcctgttcacgccttcccggcgcccccgagcttcccgctcatgccttcatggaacacccgagcttcccgctcacgccttcccagcacccccgagcttcccgctcatgccttcatctgtaccaagaaatcaaaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

10.15

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 170, 381, 413
AccB1I GGYRCC 6 cut(s) 170, 300, 349, 381, 413, 445
AccBSI CCGCTC 4 cut(s) 319, 463, 495, 527
AciI CCGC 5 cut(s) 111, 317, 461, 493, 525
AcsI RAATTY 2 cut(s) 5, 225
AcyI GRCGYC 1 cut(s) 446
AfaI GTAC 4 cut(s) 172, 383, 415, 544
AfiI CCNNNNNNNGG 2 cut(s) 251, 288
AgsI TTSAA 4 cut(s) 67, 161, 250, 274
AjnI CCWGG 2 cut(s) 86, 345
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 9 cut(s) 50, 312, 327, 360, 399, 424, 456, 488, 520
AluI AGCT 9 cut(s) 50, 312, 327, 360, 399, 424, 456, 488, 520
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 3 cut(s) 29, 136, 206
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
AoxI GGCC 3 cut(s) 175, 242, 257
ApoI RAATTY 2 cut(s) 5, 225
Asp700I GAANNNNTTC 1 cut(s) 225
Asp718I GGTACC 3 cut(s) 170, 381, 413
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 2 cut(s) 411, 443
AvaI CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
BanI GGYRCC 6 cut(s) 170, 300, 349, 381, 413, 445
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 2 cut(s) 127, 249
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 2 cut(s) 88, 347
BcnI CCSGG 2 cut(s) 411, 443
BcoDI GTCTC 3 cut(s) 29, 136, 206
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 4 cut(s) 88, 347, 411, 443
BmeT110I CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 6 cut(s) 172, 302, 351, 383, 415, 447
BmrFI CCNGG 4 cut(s) 88, 347, 411, 443
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 411, 443
BsaHI GRCGYC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 18, 87
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 288
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 2 cut(s) 186, 229
BseBI CCWGG 2 cut(s) 88, 347
BseDI CCNNGG 2 cut(s) 18, 87
BseGI GGATG 2 cut(s) 260, 273
BseLI CCNNNNNNNGG 2 cut(s) 251, 288
BseMI GCAATG 2 cut(s) 186, 229
BseNI ACTGG 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 3 cut(s) 177, 244, 259
BshNI GGYRCC 6 cut(s) 170, 300, 349, 381, 413, 445
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
BsiSI CCGG 3 cut(s) 174, 411, 443
BslI CCNNNNNNNGG 2 cut(s) 251, 288
BsmAI GTCTC 3 cut(s) 29, 136, 206
BsnI GGCC 3 cut(s) 177, 244, 259
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
Bsp1286I GDGCHC 1 cut(s) 46
BspACI CCGC 5 cut(s) 111, 317, 461, 493, 525
BspANI GGCC 3 cut(s) 177, 244, 259
BspHI TCATGA 1 cut(s) 560
BspLI GGNNCC 6 cut(s) 172, 302, 351, 383, 415, 447
BspT107I GGYRCC 6 cut(s) 170, 300, 349, 381, 413, 445
BspTNI GGTCTC 1 cut(s) 206
BsrBI CCGCTC 4 cut(s) 319, 463, 495, 527
BsrDI GCAATG 2 cut(s) 186, 229
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 18, 87
BssNI GRCGYC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 88, 347
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 260, 273
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstMAI GTCTC 3 cut(s) 29, 136, 206
BstMWI GCNNNNNNNGC 2 cut(s) 443, 507
BstNI CCWGG 2 cut(s) 88, 347
BstSCI CCNGG 4 cut(s) 86, 345, 409, 441
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 3 cut(s) 177, 244, 259
BtsCI GGATG 2 cut(s) 260, 273
CaiI CAGNNNCTG 1 cut(s) 38
CciI TCATGA 1 cut(s) 560
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 4 cut(s) 171, 382, 414, 543
CviAII CATG 5 cut(s) 97, 466, 474, 530, 561
CviQI GTAC 4 cut(s) 171, 382, 414, 543
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 206
Eco88I CYCGRG 6 cut(s) 307, 355, 387, 451, 483, 515
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 86, 345
EcoT14I CCWWGG 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 100, 469, 477, 533, 564
FaiI YATR 7 cut(s) 29, 98, 116, 467, 475, 531, 562
FatI CATG 5 cut(s) 96, 465, 473, 529, 560
FauI CCCGC 4 cut(s) 324, 468, 500, 532
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 2 cut(s) 267, 280
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 112
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 3 cut(s) 177, 244, 259
HapII CCGG 3 cut(s) 174, 411, 443
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 5 cut(s) 100, 469, 477, 533, 564
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 101
HpaII CCGG 3 cut(s) 174, 411, 443
Hpy166II GTNNAC 2 cut(s) 15, 433
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 2 cut(s) 15, 433
HpyAV CCTTC 7 cut(s) 384, 416, 427, 448, 480, 512, 544
HpyCH4III ACNGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 507
HpyF3I CTNAG 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 5 cut(s) 100, 469, 477, 533, 564
HspAI GCGC 1 cut(s) 446
KasI GGCGCC 1 cut(s) 445
KpnI GGTACC 3 cut(s) 174, 385, 417
LmnI GCTCC 1 cut(s) 41
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 277
MbiI CCGCTC 4 cut(s) 319, 463, 495, 527
MboII GAAGA 2 cut(s) 35, 173
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 5, 156, 225
Mly113I GGCGCC 1 cut(s) 446
MnlI CCTC 6 cut(s) 144, 188, 234, 258, 282, 291
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 155
MspI CCGG 3 cut(s) 174, 411, 443
MspR9I CCNGG 4 cut(s) 88, 347, 411, 443
MvaI CCWGG 2 cut(s) 88, 347
MwoI GCNNNNNNNGC 2 cut(s) 443, 507
NarI GGCGCC 1 cut(s) 446
NciI CCSGG 2 cut(s) 411, 443
NlaIII CATG 5 cut(s) 100, 469, 477, 533, 564
NlaIV GGNNCC 6 cut(s) 172, 302, 351, 383, 415, 447
NmuCI GTSAC 1 cut(s) 277
PagI TCATGA 1 cut(s) 560
PceI AGGCCT 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 113
PluTI GGCGCC 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 86, 345
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 86, 345
PspN4I GGNNCC 6 cut(s) 172, 302, 351, 383, 415, 447
PspPI GGNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 4 cut(s) 172, 383, 415, 544
RsaNI GTAC 4 cut(s) 171, 382, 414, 543
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 4 cut(s) 88, 347, 411, 443
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 3 cut(s) 5, 156, 225
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 5 cut(s) 111, 317, 461, 493, 525
SspDI GGCGCC 1 cut(s) 445
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 4 cut(s) 86, 345, 409, 441
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 420
TasI AATT 3 cut(s) 5, 156, 225
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 5 cut(s) 17, 87, 218, 462, 526
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 2 cut(s) 5, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.