Rmu_sc0009360.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0000526
Physical Location & Seq
Forward (+)
51541 .. 54801
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000016.1.cds

Sequence Viewer

Length: 387 bp
atgaaatttgtgttgaccaaggaagacgtaacagagactggagcaccagctactctgttggttttcaataatgaagttggcttttccagggagaacatggattccatttgcggcatattccattctacaaagatggaaaagagacagcagaggttaattgaagagaatggtaccggcctctacaacattgctatttctggtctcaatgatgccttgtgggaaagaattcattgcctgtcattggatatgacaccgtcttcagtgtcaggcagccatttgccaccgaagttggaagacatgggagctctggcaaagattgaaggtgcttgccttgtgttcagatacttgatcccagacgcttgtttgattgttgaattgatggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

4.96

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 343
AcsI RAATTY 2 cut(s) 5, 225
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 67, 161, 320, 374
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 2 cut(s) 50, 305
AluI AGCT 2 cut(s) 50, 305
Alw21I GWGCWC 2 cut(s) 46, 307
Alw26I GTCTC 3 cut(s) 29, 136, 206
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 2 cut(s) 5, 225
Asp700I GAANNNNTTC 1 cut(s) 225
Asp718I GGTACC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 3 cut(s) 30, 249, 300
Bbv12I GWGCWC 2 cut(s) 46, 307
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 127, 373
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 29, 136, 206
BisI GCNGC 2 cut(s) 112, 271
BlsI GCNGC 2 cut(s) 113, 272
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 3 cut(s) 30, 249, 300
BpmI CTGGAG 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 18, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 2 cut(s) 186, 229
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 18, 87
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 186, 229
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 46, 307
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 29, 136, 206
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 46, 307
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 186, 229
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 18, 87
BssMI GATC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 3 cut(s) 29, 136, 206
BstMBI GATC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 3 cut(s) 30, 249, 300
BsuRI GGCC 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 173
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 171
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 2 cut(s) 97, 298
CviJI RGCY 5 cut(s) 50, 81, 177, 273, 305
CviKI_1 RGCY 5 cut(s) 50, 81, 177, 273, 305
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 100, 301
FaiI YATR 5 cut(s) 98, 116, 248, 299, 385
FatI CATG 2 cut(s) 96, 297
Fnu4HI GCNGC 2 cut(s) 112, 271
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 112, 271
GluI GCNGC 2 cut(s) 112, 271
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 100, 301
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 100, 301
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 41, 302
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 4 cut(s) 35, 173, 249, 305
MhlI GDGCHC 2 cut(s) 46, 307
MluCI AATT 4 cut(s) 5, 156, 225, 374
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 2 cut(s) 144, 188
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 155
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
NdeII GATC 1 cut(s) 348
NlaIII CATG 2 cut(s) 100, 301
NlaIV GGNNCC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 113, 272
Psp124BI GAGCTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SacI GAGCTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 112, 271
Sau3AI GATC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 46, 307
SetI ASST 5 cut(s) 30, 52, 155, 307, 325
SfaNI GCATC 1 cut(s) 199
Sse9I AATT 4 cut(s) 5, 156, 225, 374
SsiI CCGC 1 cut(s) 111
SstI GAGCTC 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 30
TasI AATT 4 cut(s) 5, 156, 225, 374
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 267
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 3 cut(s) 17, 87, 218
TspRI CASTG 1 cut(s) 267
Tth111I GACNNNGTC 1 cut(s) 253
XapI RAATTY 2 cut(s) 5, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.