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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1583 |
| Acc36I | ACCTGC | 3 cut(s) | 418, 3151, 3234 |
| Acc65I | GGTACC | 1 cut(s) | 2652 |
| AccB1I | GGYRCC | 1 cut(s) | 2652 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2386, 3043 |
| AccBSI | CCGCTC | 1 cut(s) | 34 |
| AciI | CCGC | 7 cut(s) | 34, 131, 1070, 1450, 1813, 3057, 3248 |
| AclWI | GGATC | 3 cut(s) | 15, 2044, 2370 |
| AcoI | YGGCCR | 2 cut(s) | 1939, 2209 |
| AcuI | CTGAAG | 6 cut(s) | 578, 1256, 1295, 1538, 1751, 2588 |
| AcyI | GRCGYC | 1 cut(s) | 1419 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 236, 588, 2386, 3043 |
| AflII | CTTAAG | 1 cut(s) | 1550 |
| AflIII | ACRYGT | 2 cut(s) | 1956, 2993 |
| AjnI | CCWGG | 2 cut(s) | 74, 1566 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2656, 2688 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2789, 2821 |
| Alw21I | GWGCWC | 2 cut(s) | 2745, 3131 |
| Alw26I | GTCTC | 7 cut(s) | 520, 652, 792, 942, 1277, 1350, 2915 |
| Alw44I | GTGCAC | 2 cut(s) | 2741, 3127 |
| AlwI | GGATC | 3 cut(s) | 15, 2044, 2370 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2552, 3107 |
| Ama87I | CYCGRG | 1 cut(s) | 1148 |
| AoxI | GGCC | 4 cut(s) | 590, 1939, 1946, 2209 |
| ApaLI | GTGCAC | 2 cut(s) | 2741, 3127 |
| ApeKI | GCWGC | 6 cut(s) | 317, 386, 794, 1302, 1557, 2692 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1035 |
| Asp718I | GGTACC | 1 cut(s) | 2652 |
| AspA2I | CCTAGG | 1 cut(s) | 361 |
| AspLEI | GCGC | 1 cut(s) | 1584 |
| AspS9I | GGNCC | 2 cut(s) | 2009, 2849 |
| AsuII | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| AsuNHI | GCTAGC | 1 cut(s) | 1834 |
| AvaI | CYCGRG | 1 cut(s) | 1148 |
| AvaII | GGWCC | 2 cut(s) | 2009, 2849 |
| AvrII | CCTAGG | 1 cut(s) | 361 |
| BaeGI | GKGCMC | 2 cut(s) | 2745, 3131 |
| BalI | TGGCCA | 1 cut(s) | 1941 |
| BanI | GGYRCC | 1 cut(s) | 2652 |
| BbsI | GAAGAC | 5 cut(s) | 1244, 1319, 1655, 1934, 2622 |
| Bbv12I | GWGCWC | 2 cut(s) | 2745, 3131 |
| BbvCI | CCTCAGC | 1 cut(s) | 2658 |
| BbvI | GCAGC | 6 cut(s) | 304, 398, 781, 1289, 1544, 2679 |
| BccI | CCATC | 3 cut(s) | 1004, 2000, 3037 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1469, 1503, 3208, 3242 |
| BciT130I | CCWGG | 2 cut(s) | 76, 1568 |
| BclI | TGATCA | 4 cut(s) | 676, 1339, 2449, 3159 |
| BcoDI | GTCTC | 7 cut(s) | 520, 652, 792, 942, 1277, 1350, 2915 |
| BfaI | CTAG | 5 cut(s) | 134, 362, 1835, 3179, 3280 |
| BfmI | CTRYAG | 6 cut(s) | 318, 384, 889, 931, 1372, 3227 |
| BfrI | CTTAAG | 1 cut(s) | 1550 |
| BfuAI | ACCTGC | 3 cut(s) | 418, 3151, 3234 |
| BglII | AGATCT | 4 cut(s) | 1546, 1604, 2217, 3231 |
| BisI | GCNGC | 8 cut(s) | 131, 318, 387, 795, 1303, 1558, 1813, 2693 |
| BlnI | CCTAGG | 1 cut(s) | 361 |
| BlsI | GCNGC | 8 cut(s) | 132, 319, 388, 796, 1304, 1559, 1814, 2694 |
| Bme1390I | CCNGG | 2 cut(s) | 76, 1568 |
| Bme18I | GGWCC | 2 cut(s) | 2009, 2849 |
| BmeT110I | CYCGRG | 1 cut(s) | 1148 |
| BmgT120I | GGNCC | 2 cut(s) | 2009, 2849 |
| BmiI | GGNNCC | 5 cut(s) | 368, 1633, 2011, 2193, 2654 |
| BmrFI | CCNGG | 2 cut(s) | 76, 1568 |
| BmrI | ACTGGG | 3 cut(s) | 411, 1306, 1404 |
| BmsI | GCATC | 5 cut(s) | 989, 1466, 2509, 2761, 3235 |
| BmtI | GCTAGC | 1 cut(s) | 1838 |
| BmuI | ACTGGG | 3 cut(s) | 411, 1306, 1404 |
| BpiI | GAAGAC | 5 cut(s) | 1244, 1319, 1655, 1934, 2622 |
| BpmI | CTGGAG | 1 cut(s) | 1806 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2658 |
| Bpu14I | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| BpuEI | CTTGAG | 4 cut(s) | 635, 1076, 2194, 2776 |
| BsaAI | YACGTR | 1 cut(s) | 2996 |
| BsaHI | GRCGYC | 1 cut(s) | 1419 |
| BsaI | GGTCTC | 2 cut(s) | 520, 942 |
| BsaJI | CCNNGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| BsaWI | WCCGGW | 2 cut(s) | 581, 940 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2238, 2268 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 236, 588, 2386, 3043 |
| Bse3DI | GCAATG | 3 cut(s) | 826, 1838, 2589 |
| BseBI | CCWGG | 2 cut(s) | 76, 1568 |
| BseDI | CCNNGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| BseGI | GGATG | 3 cut(s) | 2293, 3033, 3250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 236, 588, 2386, 3043 |
| BseMI | GCAATG | 3 cut(s) | 826, 1838, 2589 |
| BseMII | CTCAG | 6 cut(s) | 108, 1188, 1799, 2672, 2813, 3099 |
| BseSI | GKGCMC | 2 cut(s) | 2745, 3131 |
| BseXI | GCAGC | 6 cut(s) | 304, 398, 781, 1289, 1544, 2679 |
| BsgI | GTGCAG | 3 cut(s) | 426, 2280, 3129 |
| BshFI | GGCC | 4 cut(s) | 592, 1941, 1948, 2211 |
| BshNI | GGYRCC | 1 cut(s) | 2652 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2745, 3131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1148 |
| BsiSI | CCGG | 2 cut(s) | 582, 941 |
| BslFI | GGGAC | 3 cut(s) | 872, 907, 3023 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 236, 588, 2386, 3043 |
| BsmAI | GTCTC | 7 cut(s) | 520, 652, 792, 942, 1277, 1350, 2915 |
| BsmBI | CGTCTC | 1 cut(s) | 2915 |
| BsmFI | GGGAC | 3 cut(s) | 872, 907, 3023 |
| BsmI | GAATGC | 7 cut(s) | 464, 1178, 1305, 1560, 1620, 1853, 2273 |
| BsnI | GGCC | 4 cut(s) | 592, 1941, 1948, 2211 |
| Bso31I | GGTCTC | 2 cut(s) | 520, 942 |
| BsoBI | CYCGRG | 1 cut(s) | 1148 |
| Bsp119I | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2745, 3131 |
| Bsp1407I | TGTACA | 3 cut(s) | 341, 2052, 2703 |
| Bsp19I | CCATGG | 1 cut(s) | 1919 |
| BspACI | CCGC | 7 cut(s) | 34, 131, 1070, 1450, 1813, 3057, 3248 |
| BspANI | GGCC | 4 cut(s) | 592, 1941, 1948, 2211 |
| BspCNI | CTCAG | 6 cut(s) | 107, 1189, 1800, 2671, 2814, 3100 |
| BspHI | TCATGA | 2 cut(s) | 1711, 2134 |
| BspLI | GGNNCC | 5 cut(s) | 368, 1633, 2011, 2193, 2654 |
| BspMAI | CTGCAG | 3 cut(s) | 322, 388, 3231 |
| BspMI | ACCTGC | 3 cut(s) | 418, 3151, 3234 |
| BspOI | GCTAGC | 1 cut(s) | 1838 |
| BspPI | GGATC | 3 cut(s) | 15, 2044, 2370 |
| BspQI | GCTCTTC | 1 cut(s) | 583 |
| BspT104I | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| BspT107I | GGYRCC | 1 cut(s) | 2652 |
| BspTI | CTTAAG | 1 cut(s) | 1550 |
| BspTNI | GGTCTC | 2 cut(s) | 520, 942 |
| BsrBI | CCGCTC | 1 cut(s) | 34 |
| BsrDI | GCAATG | 3 cut(s) | 826, 1838, 2589 |
| BsrGI | TGTACA | 3 cut(s) | 341, 2052, 2703 |
| BssECI | CCNNGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| BssNI | GRCGYC | 1 cut(s) | 1419 |
| BssT1I | CCWWGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| Bst2UI | CCWGG | 2 cut(s) | 76, 1568 |
| Bst4CI | ACNGT | 8 cut(s) | 326, 341, 866, 1691, 2314, 2613, 2628, 3006 |
| Bst6I | CTCTTC | 3 cut(s) | 583, 1727, 2870 |
| BstACI | GRCGYC | 1 cut(s) | 1419 |
| BstAFI | CTTAAG | 1 cut(s) | 1550 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2771 |
| BstAUI | TGTACA | 3 cut(s) | 341, 2052, 2703 |
| BstBAI | YACGTR | 1 cut(s) | 2996 |
| BstBI | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| BstC8I | GCNNGC | 8 cut(s) | 231, 760, 1178, 1836, 1853, 1939, 2067, 2209 |
| BstDEI | CTNAG | 7 cut(s) | 94, 1197, 1808, 2658, 2688, 2822, 3108 |
| BstDSI | CCRYGG | 1 cut(s) | 1919 |
| BstF5I | GGATG | 3 cut(s) | 2293, 3033, 3250 |
| BstHHI | GCGC | 1 cut(s) | 1584 |
| BstMAI | GTCTC | 7 cut(s) | 520, 652, 792, 942, 1277, 1350, 2915 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 598, 1563, 1840, 2341, 2771 |
| BstNI | CCWGG | 2 cut(s) | 76, 1568 |
| BstNSI | RCATGY | 3 cut(s) | 762, 1180, 1960 |
| BstSCI | CCNGG | 2 cut(s) | 74, 1566 |
| BstSFI | CTRYAG | 6 cut(s) | 318, 384, 889, 931, 1372, 3227 |
| BstSLI | GKGCMC | 2 cut(s) | 2745, 3131 |
| BstV1I | GCAGC | 6 cut(s) | 304, 398, 781, 1289, 1544, 2679 |
| BstV2I | GAAGAC | 5 cut(s) | 1244, 1319, 1655, 1934, 2622 |
| BstX2I | RGATCY | 6 cut(s) | 7, 1546, 1604, 2036, 2217, 3231 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2863 |
| BstYI | RGATCY | 6 cut(s) | 7, 1546, 1604, 2036, 2217, 3231 |
| BsuRI | GGCC | 4 cut(s) | 592, 1941, 1948, 2211 |
| BtgI | CCRYGG | 1 cut(s) | 1919 |
| BtsCI | GGATG | 3 cut(s) | 2293, 3033, 3250 |
| BtsIMutI | CAGTG | 6 cut(s) | 254, 424, 2459, 2485, 2618, 3129 |
| BveI | ACCTGC | 3 cut(s) | 418, 3151, 3234 |
| Cac8I | GCNNGC | 8 cut(s) | 231, 760, 1178, 1836, 1853, 1939, 2067, 2209 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2552, 3107 |
| CciI | TCATGA | 2 cut(s) | 1711, 2134 |
| CfoI | GCGC | 1 cut(s) | 1584 |
| Cfr13I | GGNCC | 2 cut(s) | 2009, 2849 |
| CseI | GACGC | 4 cut(s) | 1247, 1427, 2932, 2997 |
| DdeI | CTNAG | 7 cut(s) | 94, 1197, 1808, 2658, 2688, 2822, 3108 |
| DraI | TTTAAA | 2 cut(s) | 1534, 2496 |
| EaeI | YGGCCR | 2 cut(s) | 1939, 2209 |
| Eam1104I | CTCTTC | 3 cut(s) | 583, 1727, 2870 |
| EarI | CTCTTC | 3 cut(s) | 583, 1727, 2870 |
| EciI | GGCGGA | 1 cut(s) | 3072 |
| Eco130I | CCWWGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| Eco147I | AGGCCT | 1 cut(s) | 1948 |
| Eco31I | GGTCTC | 2 cut(s) | 520, 942 |
| Eco32I | GATATC | 1 cut(s) | 664 |
| Eco47I | GGWCC | 2 cut(s) | 2009, 2849 |
| Eco57I | CTGAAG | 6 cut(s) | 578, 1256, 1295, 1538, 1751, 2588 |
| Eco88I | CYCGRG | 1 cut(s) | 1148 |
| EcoRI | GAATTC | 5 cut(s) | 1288, 1754, 3019, 3182, 3259 |
| EcoRII | CCWGG | 2 cut(s) | 74, 1566 |
| EcoRV | GATATC | 1 cut(s) | 664 |
| EcoT14I | CCWWGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| EcoT22I | ATGCAT | 4 cut(s) | 466, 1178, 1182, 1459 |
| ErhI | CCWWGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| Esp3I | CGTCTC | 1 cut(s) | 2915 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2656, 2688 |
| FaqI | GGGAC | 3 cut(s) | 872, 907, 3023 |
| FbaI | TGATCA | 4 cut(s) | 676, 1339, 2449, 3159 |
| Fnu4HI | GCNGC | 8 cut(s) | 131, 318, 387, 795, 1303, 1558, 1813, 2693 |
| FokI | GGATG | 3 cut(s) | 2300, 3020, 3257 |
| Fsp4HI | GCNGC | 8 cut(s) | 131, 318, 387, 795, 1303, 1558, 1813, 2693 |
| FspBI | CTAG | 5 cut(s) | 134, 362, 1835, 3179, 3280 |
| FspI | TGCGCA | 1 cut(s) | 1583 |
| GlaI | GCGC | 1 cut(s) | 1583 |
| GluI | GCNGC | 8 cut(s) | 131, 318, 387, 795, 1303, 1558, 1813, 2693 |
| GsuI | CTGGAG | 1 cut(s) | 1806 |
| HaeIII | GGCC | 4 cut(s) | 592, 1941, 1948, 2211 |
| HapII | CCGG | 2 cut(s) | 582, 941 |
| HgaI | GACGC | 4 cut(s) | 1247, 1427, 2932, 2997 |
| HhaI | GCGC | 1 cut(s) | 1584 |
| Hin1I | GRCGYC | 1 cut(s) | 1419 |
| Hin6I | GCGC | 1 cut(s) | 1582 |
| HinP1I | GCGC | 1 cut(s) | 1582 |
| HincII | GTYRAC | 1 cut(s) | 2310 |
| HindII | GTYRAC | 1 cut(s) | 2310 |
| HindIII | AAGCTT | 3 cut(s) | 38, 2405, 2665 |
| HpaII | CCGG | 2 cut(s) | 582, 941 |
| Hpy166II | GTNNAC | 3 cut(s) | 2310, 2743, 3129 |
| Hpy188III | TCNNGA | 9 cut(s) | 627, 1262, 1712, 1823, 1889, 2135, 2221, 3037, 3208 |
| Hpy8I | GTNNAC | 3 cut(s) | 2310, 2743, 3129 |
| Hpy99I | CGWCG | 2 cut(s) | 492, 3242 |
| HpyCH4III | ACNGT | 8 cut(s) | 326, 341, 866, 1691, 2314, 2613, 2628, 3006 |
| HpyCH4IV | ACGT | 4 cut(s) | 291, 920, 1344, 2995 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 598, 1563, 1840, 2341, 2771 |
| HpyF3I | CTNAG | 7 cut(s) | 94, 1197, 1808, 2658, 2688, 2822, 3108 |
| HpySE526I | ACGT | 4 cut(s) | 291, 920, 1344, 2995 |
| Hsp92I | GRCGYC | 1 cut(s) | 1419 |
| HspAI | GCGC | 1 cut(s) | 1582 |
| KpnI | GGTACC | 1 cut(s) | 2656 |
| Ksp22I | TGATCA | 4 cut(s) | 676, 1339, 2449, 3159 |
| LguI | GCTCTTC | 1 cut(s) | 583 |
| LmnI | GCTCC | 4 cut(s) | 418, 718, 2191, 3154 |
| Lsp1109I | GCAGC | 6 cut(s) | 304, 398, 781, 1289, 1544, 2679 |
| LweI | GCATC | 5 cut(s) | 989, 1466, 2509, 2761, 3235 |
| MaeI | CTAG | 5 cut(s) | 134, 362, 1835, 3179, 3280 |
| MaeII | ACGT | 4 cut(s) | 291, 920, 1344, 2995 |
| MbiI | CCGCTC | 1 cut(s) | 34 |
| MflI | RGATCY | 6 cut(s) | 7, 1546, 1604, 2036, 2217, 3231 |
| MhlI | GDGCHC | 2 cut(s) | 2745, 3131 |
| MlsI | TGGCCA | 1 cut(s) | 1941 |
| MluNI | TGGCCA | 1 cut(s) | 1941 |
| MlyI | GAGTC | 3 cut(s) | 626, 744, 1776 |
| MmeI | TCCRAC | 3 cut(s) | 712, 1317, 2595 |
| Mox20I | TGGCCA | 1 cut(s) | 1941 |
| Mph1103I | ATGCAT | 4 cut(s) | 466, 1178, 1182, 1459 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1035 |
| MscI | TGGCCA | 1 cut(s) | 1941 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2861 |
| Msp20I | TGGCCA | 1 cut(s) | 1941 |
| MspCI | CTTAAG | 1 cut(s) | 1550 |
| MspI | CCGG | 2 cut(s) | 582, 941 |
| MspR9I | CCNGG | 2 cut(s) | 76, 1568 |
| Mva1269I | GAATGC | 7 cut(s) | 464, 1178, 1305, 1560, 1620, 1853, 2273 |
| MvaI | CCWGG | 2 cut(s) | 76, 1568 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 598, 1563, 1840, 2341, 2771 |
| NcoI | CCATGG | 1 cut(s) | 1919 |
| NheI | GCTAGC | 1 cut(s) | 1834 |
| NlaIV | GGNNCC | 5 cut(s) | 368, 1633, 2011, 2193, 2654 |
| NmuCI | GTSAC | 3 cut(s) | 1119, 2080, 2120 |
| NsbI | TGCGCA | 1 cut(s) | 1583 |
| NsiI | ATGCAT | 4 cut(s) | 466, 1178, 1182, 1459 |
| NspI | RCATGY | 3 cut(s) | 762, 1180, 1960 |
| NspV | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| PaeI | GCATGC | 2 cut(s) | 762, 1180 |
| PagI | TCATGA | 2 cut(s) | 1711, 2134 |
| PceI | AGGCCT | 1 cut(s) | 1948 |
| PciI | ACATGT | 1 cut(s) | 1956 |
| PciSI | GCTCTTC | 1 cut(s) | 583 |
| PctI | GAATGC | 7 cut(s) | 464, 1178, 1305, 1560, 1620, 1853, 2273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1035 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2386, 3043 |
| PkrI | GCNGC | 8 cut(s) | 132, 319, 388, 796, 1304, 1559, 1814, 2694 |
| PleI | GAGTC | 3 cut(s) | 625, 743, 1775 |
| PpsI | GAGTC | 3 cut(s) | 625, 743, 1775 |
| Ppu21I | YACGTR | 1 cut(s) | 2996 |
| PscI | ACATGT | 1 cut(s) | 1956 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| Psp6I | CCWGG | 2 cut(s) | 74, 1566 |
| PspGI | CCWGG | 2 cut(s) | 74, 1566 |
| PspN4I | GGNNCC | 5 cut(s) | 368, 1633, 2011, 2193, 2654 |
| PspPI | GGNCC | 2 cut(s) | 2009, 2849 |
| PstI | CTGCAG | 3 cut(s) | 322, 388, 3231 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2552, 3107 |
| PsuI | RGATCY | 6 cut(s) | 7, 1546, 1604, 2036, 2217, 3231 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2861 |
| SapI | GCTCTTC | 1 cut(s) | 583 |
| SatI | GCNGC | 8 cut(s) | 131, 318, 387, 795, 1303, 1558, 1813, 2693 |
| Sau96I | GGNCC | 2 cut(s) | 2009, 2849 |
| SchI | GAGTC | 3 cut(s) | 626, 744, 1776 |
| ScrFI | CCNGG | 2 cut(s) | 76, 1568 |
| SduI | GDGCHC | 2 cut(s) | 2745, 3131 |
| SfaNI | GCATC | 5 cut(s) | 989, 1466, 2509, 2761, 3235 |
| SfcI | CTRYAG | 6 cut(s) | 318, 384, 889, 931, 1372, 3227 |
| SfuI | TTCGAA | 3 cut(s) | 1044, 2480, 2622 |
| SinI | GGWCC | 2 cut(s) | 2009, 2849 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2861 |
| SmlI | CTYRAG | 5 cut(s) | 614, 1055, 1550, 2173, 2791 |
| SmoI | CTYRAG | 5 cut(s) | 614, 1055, 1550, 2173, 2791 |
| SphI | GCATGC | 2 cut(s) | 762, 1180 |
| SseBI | AGGCCT | 1 cut(s) | 1948 |
| SsiI | CCGC | 7 cut(s) | 34, 131, 1070, 1450, 1813, 3057, 3248 |
| SspI | AATATT | 3 cut(s) | 506, 851, 1442 |
| SspMI | CTAG | 5 cut(s) | 134, 362, 1835, 3179, 3280 |
| StuI | AGGCCT | 1 cut(s) | 1948 |
| StyD4I | CCNGG | 2 cut(s) | 74, 1566 |
| StyI | CCWWGG | 5 cut(s) | 361, 925, 1591, 1919, 2893 |
| TaaI | ACNGT | 8 cut(s) | 326, 341, 866, 1691, 2314, 2613, 2628, 3006 |
| TaiI | ACGT | 4 cut(s) | 294, 923, 1347, 2998 |
| TatI | WGTACW | 5 cut(s) | 341, 708, 823, 2052, 2703 |
| TauI | GCSGC | 2 cut(s) | 133, 1815 |
| TscAI | CASTG | 6 cut(s) | 261, 424, 2459, 2492, 2618, 3136 |
| TseFI | GTSAC | 3 cut(s) | 1119, 2080, 2120 |
| TseI | GCWGC | 6 cut(s) | 317, 386, 794, 1302, 1557, 2692 |
| Tsp45I | GTSAC | 3 cut(s) | 1119, 2080, 2120 |
| TspGWI | ACGGA | 4 cut(s) | 368, 407, 827, 2516 |
| TspRI | CASTG | 6 cut(s) | 261, 424, 2459, 2492, 2618, 3136 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2386, 3043 |
| Vha464I | CTTAAG | 1 cut(s) | 1550 |
| VneI | GTGCAC | 2 cut(s) | 2741, 3127 |
| VpaK11BI | GGWCC | 2 cut(s) | 2009, 2849 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XceI | RCATGY | 3 cut(s) | 762, 1180, 1960 |
| XmaJI | CCTAGG | 1 cut(s) | 361 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1035 |
| XspI | CTAG | 5 cut(s) | 134, 362, 1835, 3179, 3280 |
| Zsp2I | ATGCAT | 4 cut(s) | 466, 1178, 1182, 1459 |