Rh7AG101300

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000526
Physical Location & Seq
Forward (+)
7832356 .. 7834375
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG101300.1

Sequence Viewer

Length: 411 bp
ATGGCGACGACAATGACGCCAAGGGAGCACATAGAAGATATACGGAAGACCAAGTTCTCCATCGGAGAAAAGCTCAACCCTTTAACGGAGGATCTTCACCAGGCCGTCAAGAACCTCTCCGGCGAGCTTTACTCTAAAGACGTCCACTTTTTCATGGAACTCGTTCAGAATGCAGAAGACAATGAGTACTTGGAGGGGGTCGATCCATCCCTTGAGTTTGTGATTACATACCTCGATATAACGGCTACAGGGGCTCCAGCCACATTGCTGGTTTTCAATAATGAGAAGGGGTTTTCTCCCAAAAACATAGACTCCATTTGCAGTGTTGGACGGTCCACCAAGAAAGGCAACAGGAAGCGTGGTTATATTGGGGAGAAAGGCAATTGTCTCCAAGATCGAATAGTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

5.63

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AclWI GGATC 2 cut(s) 99, 197
AcyI GRCGYC 2 cut(s) 17, 141
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 73, 127
AluI AGCT 2 cut(s) 73, 127
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 2 cut(s) 99, 197
AoxI GGCC 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 53, 183
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 2 cut(s) 68, 214
BceAI ACGGC 2 cut(s) 89, 258
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 53, 183
BplI GAGNNNNNCTC 4 cut(s) 57, 89, 116, 148
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 17, 141
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 263
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 30, 256
Bsp143I GATC 3 cut(s) 91, 202, 394
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 2 cut(s) 99, 197
BsrDI GCAATG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 91, 202, 394
BssNI GRCGYC 2 cut(s) 17, 141
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 17, 141
BstC8I GCNNGC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 94, 205, 397
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 91, 202, 394
BstMWI GCNNNNNNNGC 2 cut(s) 25, 251
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 246
BstV2I GAAGAC 2 cut(s) 53, 183
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 73, 104, 127, 245, 254, 260
CviKI_1 RGCY 6 cut(s) 73, 104, 127, 245, 254, 260
CviQI GTAC 1 cut(s) 187
DpnI GATC 3 cut(s) 93, 204, 396
DpnII GATC 3 cut(s) 91, 202, 394
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 157
FaiI YATR 7 cut(s) 32, 41, 155, 229, 239, 308, 366
FatI CATG 1 cut(s) 153
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 25
Hin1I GRCGYC 2 cut(s) 17, 141
Hin1II CATG 1 cut(s) 157
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 145, 336
Hpy188I TCNGA 2 cut(s) 65, 168
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 145, 336
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 173, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 251
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 2 cut(s) 17, 141
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 91, 202, 394
LmnI GCTCC 2 cut(s) 25, 259
LpnPI CCDG 7 cut(s) 86, 113, 133, 234, 254, 270, 337
MaeII ACGT 1 cut(s) 141
MalI GATC 3 cut(s) 93, 204, 396
MboI GATC 3 cut(s) 91, 202, 394
MboII GAAGA 4 cut(s) 47, 58, 86, 188
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 30, 256
MluCI AATT 1 cut(s) 382
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 4 cut(s) 82, 125, 187, 242
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 83
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 25, 251
NdeII GATC 3 cut(s) 91, 202, 394
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 255
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 162
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 83
Sau3AI GATC 3 cut(s) 91, 202, 394
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 30, 256
SetI ASST 5 cut(s) 75, 117, 129, 144, 234
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 201, 234, 397
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 2 cut(s) 58, 101
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 162
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.