RLG00000023303

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000526
Physical Location & Seq
Reverse (-)
21516154 .. 21518291
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023303

Sequence Viewer

Length: 345 bp
ATGACACCTCACTCCACCGAGAGGGGTTTCTGGGTTATTGGCTTAACCTTGAGGTGGAGGTGTGTTGAGAAAGGCAGGAGAGCTGCTGAGGTTTCATATGCTACTGTTGTAAGACCAATAATCAAGAATGCTGAAGACAATGAGTACAAAGAAGGTCTACAACCAACTCTGGAGTTCATGCTGACCAAGAAAGACATAACTAGGACTGGAGCACCAGCTACTCTTTTGGTTTTCAATAATGAGGTTGGCTTTTCCAGGGAGAACATAGACTCCATTTGCAGCATTGGCTGTTCTACCAAGAAAGGGAAGAGACGTCAGGGCTTTATTGGGGAGAAAGGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

9.51

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 21, 54, 303
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 254
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 83, 218
AluI AGCT 2 cut(s) 83, 218
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 83, 279
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 70, 291
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 84, 280
BlsI GCNGC 2 cut(s) 85, 281
Bme1390I CCNGG 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 191, 228
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 54, 303
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 3 cut(s) 21, 54, 303
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 70, 291
BsiHKAI GWGCWC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 21, 54, 303
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 70, 291
BstV2I GAAGAC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 178
CviJI RGCY 6 cut(s) 42, 83, 218, 249, 288, 321
CviKI_1 RGCY 6 cut(s) 42, 83, 218, 249, 288, 321
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 1 cut(s) 181
FaiI YATR 5 cut(s) 97, 99, 179, 197, 266
FatI CATG 1 cut(s) 177
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 84, 280
Fsp4HI GCNGC 2 cut(s) 84, 280
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 84, 280
GsuI CTGGAG 2 cut(s) 191, 228
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 1 cut(s) 181
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 124, 170
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 1 cut(s) 181
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 16, 61, 155, 192, 228, 241, 268, 302
Lsp1109I GCAGC 2 cut(s) 70, 291
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 313
MboII GAAGA 2 cut(s) 146, 319
MhlI GDGCHC 1 cut(s) 214
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 6 cut(s) 15, 18, 45, 51, 82, 235
MseI TTAA 2 cut(s) 44, 343
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeI CATATG 1 cut(s) 97
NlaIII CATG 1 cut(s) 181
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 85, 281
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 44, 343
SatI GCNGC 2 cut(s) 84, 280
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 316
TatI WGTACW 1 cut(s) 144
Tru1I TTAA 2 cut(s) 44, 343
Tru9I TTAA 2 cut(s) 44, 343
TseI GCWGC 2 cut(s) 83, 279
TspDTI ATGAA 2 cut(s) 84, 166
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.