Rmu_sc0011817.1_g000001

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011817.1
OG0000526
Physical Location & Seq
Forward (+)
458 .. 1437
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011817.1_g000001.1.cds

Sequence Viewer

Length: 222 bp
atggcgacgacaatgacgccaagggagcacatagaagatatacggaagaccaagttctccatcggagaaaagctcaaccctttaacggaggatcttcaccaggccgtcaagaacctctccggcgagctttactctaaagacgtccactttttcatggaactcgttcagaaactccagaggcccccgcaagcccgtggccggcattttgcttctgaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

73

Amino Acids

8.49

Weight (kDa)

8.14

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 196
AcyI GRCGYC 2 cut(s) 17, 141
AfiI CCNNNNNNNGG 2 cut(s) 85, 198
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 73, 127
AluI AGCT 2 cut(s) 73, 127
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 1 cut(s) 99
AoxI GGCC 3 cut(s) 102, 179, 196
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 4 cut(s) 57, 89, 116, 148
BpmI CTGGAG 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 17, 141
BsaJI CCNNGG 2 cut(s) 20, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 198
Bse118I RCCGGY 1 cut(s) 198
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 20, 193
BseLI CCNNNNNNNGG 2 cut(s) 85, 198
BshFI GGCC 3 cut(s) 104, 181, 198
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 120, 199
BslI CCNNNNNNNGG 2 cut(s) 85, 198
BsnI GGCC 3 cut(s) 104, 181, 198
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 185
BspANI GGCC 3 cut(s) 104, 181, 198
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 20, 193
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 2 cut(s) 17, 141
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 101
BstACI GRCGYC 2 cut(s) 17, 141
BstC8I GCNNGC 3 cut(s) 125, 189, 200
BstDSI CCRYGG 1 cut(s) 193
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 3 cut(s) 104, 181, 198
BtgI CCRYGG 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 125, 189, 200
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 180
CseI GACGC 1 cut(s) 25
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 73, 104, 127, 181, 191, 198
CviKI_1 RGCY 6 cut(s) 73, 104, 127, 181, 191, 198
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 32, 41, 155
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 3 cut(s) 104, 181, 198
HapII CCGG 2 cut(s) 120, 199
HgaI GACGC 1 cut(s) 25
Hin1I GRCGYC 2 cut(s) 17, 141
Hin1II CATG 1 cut(s) 157
HpaII CCGG 2 cut(s) 120, 199
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 65, 168, 214, 221
Hpy188III TCNNGA 2 cut(s) 109, 175
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 2 cut(s) 17, 141
Hsp92II CATG 1 cut(s) 157
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 86, 113, 133, 188, 212
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 3 cut(s) 47, 58, 86
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 3 cut(s) 82, 125, 171
MroNI GCCGGC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 83
MspI CCGG 2 cut(s) 120, 199
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 25
NaeI GCCGGC 1 cut(s) 200
NdeII GATC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 198
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 182
PdiI GCCGGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 91
SaqAI TTAA 1 cut(s) 83
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 75, 117, 129, 144
SsiI CCGC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 144
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 2 cut(s) 58, 101
XmnI GAANNNNTTC 1 cut(s) 162
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.