pycom06g12570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000526
Physical Location & Seq
Forward (+)
17716718 .. 17719708
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12570.1

Sequence Viewer

Length: 432 bp
ATGGCAATGCCGAGAAAGCACATTGAAGAAATACGCAAAGAAAAGTTCTCCATTGGAGAAGAAAAACTCAACCCTTTAACTGAAGATCTTCATCAGGCAGTAAAAAATCTTTCTCTTGAACTCTATACCAAATCTGTCCACTTTGTCATGGAACTGATTCAGAATGCAGAAGACAATGAGTACGCAGACGGCGTTGATCCATCCCTTGAATTTGTCATAACGTCCAGGGACATAACCGGCACAGGGGCTCCTGCCACATTGCTGGTTTTCAACAATGAGAAGGGATTTTCACGTAAGAACATAGAATCCATTTGCAGCATTGGCCGGTCCACCAAGAAAGGCAACCGGAAGCGCGGCTACATTGGAGAGAAAGGAATTGGCTTCAAGAGTGTGTTTCTGATCGATCGTTACAGATCGGCCCTACATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

8.65

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 28 - 133 1.9e-10 Sacsin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 354
AciI CCGC 1 cut(s) 354
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 5 cut(s) 26, 119, 209, 271, 385
AjnI CCWGG 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 322, 417
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 2 cut(s) 87, 156
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 327, 418
AvaII GGWCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 226
BglII AGATCT 1 cut(s) 85
BisI GCNGC 2 cut(s) 316, 355
BlsI GCNGC 2 cut(s) 317, 356
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 327, 418
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 2 cut(s) 236, 324
Bse3DI GCAATG 2 cut(s) 12, 257
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 2 cut(s) 12, 257
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 2 cut(s) 324, 419
BshVI ATCGAT 1 cut(s) 402
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 3 cut(s) 237, 325, 346
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 324, 419
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 5 cut(s) 85, 196, 399, 403, 413
BspACI CCGC 1 cut(s) 354
BspANI GGCC 2 cut(s) 324, 419
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 12, 257
BsrFI RCCGGY 2 cut(s) 236, 324
BssAI RCCGGY 2 cut(s) 236, 324
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 5 cut(s) 85, 196, 399, 403, 413
Bst2UI CCWGG 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 293
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 5 cut(s) 88, 199, 402, 406, 416
BstMBI GATC 5 cut(s) 85, 196, 399, 403, 413
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 16, 321
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 2 cut(s) 324, 419
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 1 cut(s) 200
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 2 cut(s) 236, 324
Cfr13I GGNCC 2 cut(s) 327, 418
ClaI ATCGAT 1 cut(s) 402
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 248, 324, 357, 381, 419
CviKI_1 RGCY 5 cut(s) 248, 324, 357, 381, 419
CviQI GTAC 1 cut(s) 181
DpnI GATC 5 cut(s) 87, 198, 401, 405, 415
DpnII GATC 5 cut(s) 85, 196, 399, 403, 413
EaeI YGGCCR 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 126, 149, 218, 233, 302
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 316, 355
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 316, 355
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 316, 355
HaeIII GGCC 2 cut(s) 324, 419
HapII CCGG 3 cut(s) 237, 325, 346
HhaI GCGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 2 cut(s) 157, 305
HpaII CCGG 3 cut(s) 237, 325, 346
Hpy166II GTNNAC 2 cut(s) 139, 330
Hpy188I TCNGA 2 cut(s) 162, 399
Hpy188III TCNNGA 2 cut(s) 116, 385
Hpy8I GTNNAC 2 cut(s) 139, 330
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 221, 292
HpyCH4V TGCA 2 cut(s) 167, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 321
HpySE526I ACGT 2 cut(s) 221, 292
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 85, 196, 399, 403, 413
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 80, 211, 228, 238, 248, 250, 264, 338, 359
Lsp1109I GCAGC 1 cut(s) 327
MaeII ACGT 2 cut(s) 221, 292
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 87, 198, 401, 405, 415
MboI GATC 5 cut(s) 85, 196, 399, 403, 413
MboII GAAGA 5 cut(s) 38, 71, 80, 95, 182
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 209, 375
MroXI GAANNNNTTC 2 cut(s) 87, 156
MseI TTAA 1 cut(s) 77
MspI CCGG 3 cut(s) 237, 325, 346
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 16, 321
NdeII GATC 5 cut(s) 85, 196, 399, 403, 413
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 87, 156
PfeI GAWTC 2 cut(s) 157, 305
PkrI GCNGC 2 cut(s) 317, 356
Ple19I CGATCG 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 327, 418
PsuI RGATCY 1 cut(s) 85
PvuI CGATCG 1 cut(s) 406
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 2 cut(s) 316, 355
Sau3AI GATC 5 cut(s) 85, 196, 399, 403, 413
Sau96I GGNCC 2 cut(s) 327, 418
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 250
SetI ASST 2 cut(s) 224, 295
SinI GGWCC 1 cut(s) 327
Sse9I AATT 2 cut(s) 209, 375
SsiI CCGC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 2 cut(s) 224, 295
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 209, 375
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 2 cut(s) 157, 305
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 87, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.