Rmu_sc0001044.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001044.1
OG0000526
Physical Location & Seq
Reverse (-)
11182 .. 17287
6106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001044.1_g000004.1.cds

Sequence Viewer

Length: 1458 bp
atgcttgaacaaaagttagcaaatgaatatgctgcgcgactaagggcagaagagactgcccaaaaggctcaacaaagatctaaggatgaaattcaaaagcttagagacgatatgcaagtagagatgcggaaaagagccgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatctccaaccaaagatgcaggaaagagccaaagagactacagagatacggaaaagagccaaagagactgcccaagaggctcaacaaaggtttgaggatgaaatccagaagcttagagatgatctgaaagcagagatgcggaaaagagccgaagagaccgctcaagaggctcaacaaaagtctgaggatgaaatgcaaaagcttagagacgatctacaattagagatattgaaaagagctgaagagactgcaaagatgcagaaaagagacgaagagaccgcccaagaggctcaacaaaagtctgaggatgaaatccaaaagcttagagacgatctacaagtagagatacggaaaagagccgaagagactgcagaaatgaggaaaagagctgaagagactacccaagagactcaacaaaggtctcaggatgaaatcagaaagcttagagatgatctgcaagcagagatgtggaaaagagctgaagatactgcccaagaaagtcaacaaaagtttgaggatgaaatccgaaagcttagagatgatttgcaagcagagatacggaaaagagctgaagatactgcagagatgctgaaaagagccgaagagaccgcccaagaggctcaacaaaagtctaaggatgaaatccaaaagcttagagatgatctacaagcagagatgcggaaaagagcccaagagactgcccaagaggctcaacaaaggccgtactaccttccccttcctcaccttcaccctcttctccctccctgtgaccgtcctcaacagcttgagcctcctccgggttgtggtttttctccccttcccttccgcctccagctcgatctctctctctccccggcggctcgcttccatgagaatgagcttgcaaaagatgaactttttattaacgctgaagagaatgaatacgaagaaggtgtagtgccagagatgaaatttgtgttgaccaaggaagacgtaacagagactggagcaccagctactctgttggttttcaataatgaagttggcttttccagggagaacatggattccatttgcggcatattccattctacaaagatggaaaagagacagcagatcttaattgaagagaatggtaccggcctctacaacattgctatttctggtctcaatgatgccttgtgggaaagaattcattgcctgtgtcttaaaatggaaattagagcattagagttaacaattgtttggtatttttggagtaaagtggagaacaacacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

485

Amino Acids

57.19

Weight (kDa)

4.96

Isoelectric Point (pI)

67.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1313
AccB1I GGYRCC 1 cut(s) 1313
AccBSI CCGCTC 1 cut(s) 359
AccII CGCG 1 cut(s) 37
AciI CCGC 9 cut(s) 127, 337, 357, 477, 807, 877, 1024, 1055, 1254
AcsI RAATTY 3 cut(s) 90, 1148, 1368
AcuI CTGAAG 5 cut(s) 459, 609, 699, 789, 1128
AfaI GTAC 2 cut(s) 923, 1315
AfiI CCNNNNNNNGG 2 cut(s) 995, 1001
AgsI TTSAA 5 cut(s) 8, 95, 430, 1210, 1304
AjnI CCWGG 1 cut(s) 1229
AloI GAACNNNNNNTCC 2 cut(s) 1229, 1261
Alw21I GWGCWC 1 cut(s) 1189
AlwNI CAGNNNCTG 1 cut(s) 1181
AoxI GGCC 2 cut(s) 917, 1318
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 3 cut(s) 90, 1148, 1368
Asp700I GAANNNNTTC 1 cut(s) 1368
Asp718I GGTACC 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 996, 1052
AsuHPI GGTGA 2 cut(s) 932, 938
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 1173
Bbv12I GWGCWC 1 cut(s) 1189
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 1270
BceAI ACGGC 1 cut(s) 904
BcgI CGANNNNNNTGC 4 cut(s) 128, 162, 548, 582
BciT130I CCWGG 1 cut(s) 1231
BcnI CCSGG 2 cut(s) 996, 1052
BfmI CTRYAG 3 cut(s) 237, 567, 777
BglI GCCNNNNNGGC 6 cut(s) 65, 155, 275, 485, 815, 905
BglII AGATCT 2 cut(s) 77, 1293
BisI GCNGC 3 cut(s) 33, 1056, 1255
BlsI GCNGC 3 cut(s) 34, 1057, 1256
Bme1390I CCNGG 3 cut(s) 996, 1052, 1231
BmiI GGNNCC 1 cut(s) 1315
BmrFI CCNGG 3 cut(s) 996, 1052, 1231
BmsI GCATC 7 cut(s) 114, 204, 324, 444, 774, 864, 1342
BpiI GAAGAC 1 cut(s) 1173
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 2 cut(s) 1013, 1203
BpuEI CTTGAG 2 cut(s) 345, 1004
BpuMI CCSGG 2 cut(s) 996, 1052
BsaI GGTCTC 5 cut(s) 347, 467, 624, 797, 1349
BsaJI CCNNGG 3 cut(s) 1050, 1161, 1230
Bsc4I CCNNNNNNNGG 2 cut(s) 995, 1001
Bse118I RCCGGY 1 cut(s) 1316
Bse1I ACTGG 1 cut(s) 1186
Bse3DI GCAATG 2 cut(s) 1329, 1372
BseBI CCWGG 1 cut(s) 1231
BseDI CCNNGG 3 cut(s) 1050, 1161, 1230
BseGI GGATG 8 cut(s) 91, 181, 301, 391, 511, 631, 721, 841
BseLI CCNNNNNNNGG 2 cut(s) 995, 1001
BseMI GCAATG 2 cut(s) 1329, 1372
BseMII CTCAG 4 cut(s) 162, 372, 492, 635
BseNI ACTGG 1 cut(s) 1186
BseRI GAGGAG 1 cut(s) 981
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 919, 1320
BshNI GGYRCC 1 cut(s) 1313
BsiHKAI GWGCWC 1 cut(s) 1189
BsiSI CCGG 3 cut(s) 995, 1052, 1317
BslI CCNNNNNNNGG 2 cut(s) 995, 1001
BsmBI CGTCTC 5 cut(s) 99, 189, 399, 459, 519
BsnI GGCC 2 cut(s) 919, 1320
Bso31I GGTCTC 5 cut(s) 347, 467, 624, 797, 1349
Bsp1286I GDGCHC 2 cut(s) 889, 1189
Bsp143I GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
BspACI CCGC 9 cut(s) 127, 337, 357, 477, 807, 877, 1024, 1055, 1254
BspANI GGCC 2 cut(s) 919, 1320
BspCNI CTCAG 4 cut(s) 163, 373, 493, 634
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 1315
BspMAI CTGCAG 2 cut(s) 571, 781
BspT107I GGYRCC 1 cut(s) 1313
BspTNI GGTCTC 5 cut(s) 347, 467, 624, 797, 1349
BsrBI CCGCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 1329, 1372
BsrFI RCCGGY 1 cut(s) 1316
BsrI ACTGG 1 cut(s) 1186
BssAI RCCGGY 1 cut(s) 1316
BssECI CCNNGG 3 cut(s) 1050, 1161, 1230
BssMI GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
BssT1I CCWWGG 1 cut(s) 1161
Bst2UI CCWGG 1 cut(s) 1231
Bst4CI ACNGT 1 cut(s) 971
BstC8I GCNNGC 4 cut(s) 657, 747, 1060, 1080
BstF5I GGATG 8 cut(s) 91, 181, 301, 391, 511, 631, 721, 841
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 9 cut(s) 80, 202, 322, 412, 532, 652, 862, 1039, 1296
BstMBI GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
BstMWI GCNNNNNNNGC 7 cut(s) 65, 155, 275, 365, 485, 815, 905
BstNI CCWGG 1 cut(s) 1231
BstSCI CCNGG 3 cut(s) 994, 1050, 1229
BstSFI CTRYAG 3 cut(s) 237, 567, 777
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 1173
BstX2I RGATCY 2 cut(s) 77, 1293
BstYI RGATCY 2 cut(s) 77, 1293
BsuRI GGCC 2 cut(s) 919, 1320
BtsCI GGATG 8 cut(s) 91, 181, 301, 391, 511, 631, 721, 841
Cac8I GCNNGC 4 cut(s) 657, 747, 1060, 1080
CaiI CAGNNNCTG 1 cut(s) 1181
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 1316
Csp6I GTAC 2 cut(s) 922, 1314
CviAII CATG 3 cut(s) 1067, 1240, 1455
CviQI GTAC 2 cut(s) 922, 1314
DpnI GATC 9 cut(s) 79, 201, 321, 411, 531, 651, 861, 1038, 1295
DpnII GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
EciI GGCGGA 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 1161
Eco24I GRGCYC 1 cut(s) 889
Eco31I GGTCTC 5 cut(s) 347, 467, 624, 797, 1349
Eco57I CTGAAG 5 cut(s) 459, 609, 699, 789, 1128
EcoRI GAATTC 1 cut(s) 1368
EcoRII CCWGG 1 cut(s) 1229
EcoT14I CCWWGG 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 1161
Esp3I CGTCTC 5 cut(s) 99, 189, 399, 459, 519
FaeI CATG 3 cut(s) 1070, 1243, 1458
FaiI YATR 6 cut(s) 30, 113, 1068, 1241, 1259, 1456
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FatI CATG 3 cut(s) 1066, 1239, 1454
Fnu4HI GCNGC 3 cut(s) 33, 1056, 1255
FokI GGATG 8 cut(s) 98, 188, 308, 398, 518, 638, 728, 848
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 3 cut(s) 33, 1056, 1255
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 33, 1056, 1255
GsuI CTGGAG 2 cut(s) 1013, 1203
HaeIII GGCC 2 cut(s) 919, 1320
HapII CCGG 3 cut(s) 995, 1052, 1317
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 1070, 1243, 1458
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 3 cut(s) 701, 1158, 1413
HindII GTYRAC 3 cut(s) 701, 1158, 1413
HindIII AAGCTT 8 cut(s) 98, 188, 308, 398, 518, 638, 728, 848
HinfI GANTC 2 cut(s) 607, 1244
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 3 cut(s) 995, 1052, 1317
HphI GGTGA 2 cut(s) 932, 938
Hpy166II GTNNAC 3 cut(s) 701, 1158, 1413
Hpy188I TCNGA 7 cut(s) 172, 185, 324, 382, 502, 635, 725
Hpy188III TCNNGA 3 cut(s) 304, 362, 623
Hpy8I GTNNAC 3 cut(s) 701, 1158, 1413
HpyAV CCTTC 6 cut(s) 938, 944, 953, 1025, 1030, 1121
HpyCH4III ACNGT 1 cut(s) 971
HpyCH4IV ACGT 1 cut(s) 1170
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 155, 275, 365, 485, 815, 905
HpySE526I ACGT 1 cut(s) 1170
Hsp92II CATG 3 cut(s) 1070, 1243, 1458
HspAI GCGC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 1317
KspAI GTTAAC 1 cut(s) 1413
Kzo9I GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
LmnI GCTCC 1 cut(s) 1184
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 7 cut(s) 114, 204, 324, 444, 774, 864, 1342
MaeII ACGT 1 cut(s) 1170
MaeIII GTNAC 2 cut(s) 965, 1171
MalI GATC 9 cut(s) 79, 201, 321, 411, 531, 651, 861, 1038, 1295
MbiI CCGCTC 1 cut(s) 359
MboI GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
MfeI CAATTG 1 cut(s) 1416
MflI RGATCY 2 cut(s) 77, 1293
MhlI GDGCHC 2 cut(s) 889, 1189
MluCI AATT 7 cut(s) 90, 416, 1148, 1299, 1368, 1395, 1416
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 1368
MseI TTAA 4 cut(s) 1101, 1298, 1386, 1412
MslI CAYNNNNRTG 1 cut(s) 1071
MspI CCGG 3 cut(s) 995, 1052, 1317
MspR9I CCNGG 3 cut(s) 996, 1052, 1231
MunI CAATTG 1 cut(s) 1416
MvaI CCWGG 1 cut(s) 1231
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 7 cut(s) 65, 155, 275, 365, 485, 815, 905
NciI CCSGG 2 cut(s) 996, 1052
NdeII GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
NlaIII CATG 3 cut(s) 1070, 1243, 1458
NlaIV GGNNCC 1 cut(s) 1315
NmuCI GTSAC 1 cut(s) 965
PdmI GAANNNNTTC 1 cut(s) 1368
PfeI GAWTC 1 cut(s) 1244
PkrI GCNGC 3 cut(s) 34, 1057, 1256
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 1229
PspGI CCWGG 1 cut(s) 1229
PspN4I GGNNCC 1 cut(s) 1315
PstI CTGCAG 2 cut(s) 571, 781
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 2 cut(s) 77, 1293
RsaI GTAC 2 cut(s) 923, 1315
RsaNI GTAC 2 cut(s) 922, 1314
RseI CAYNNNNRTG 1 cut(s) 1071
SaqAI TTAA 4 cut(s) 1101, 1298, 1386, 1412
SatI GCNGC 3 cut(s) 33, 1056, 1255
Sau3AI GATC 9 cut(s) 77, 199, 319, 409, 529, 649, 859, 1036, 1293
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 996, 1052, 1231
SduI GDGCHC 2 cut(s) 889, 1189
SfaNI GCATC 7 cut(s) 114, 204, 324, 444, 774, 864, 1342
SfcI CTRYAG 3 cut(s) 237, 567, 777
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 2 cut(s) 360, 983
SmoI CTYRAG 2 cut(s) 360, 983
Sse9I AATT 7 cut(s) 90, 416, 1148, 1299, 1368, 1395, 1416
SsiI CCGC 9 cut(s) 127, 337, 357, 477, 807, 877, 1024, 1055, 1254
StyD4I CCNGG 3 cut(s) 994, 1050, 1229
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 1 cut(s) 971
TaiI ACGT 1 cut(s) 1173
TaqI TCGA 1 cut(s) 1035
TasI AATT 7 cut(s) 90, 416, 1148, 1299, 1368, 1395, 1416
TauI GCSGC 2 cut(s) 1058, 1257
TfiI GAWTC 1 cut(s) 1244
Tru1I TTAA 4 cut(s) 1101, 1298, 1386, 1412
Tru9I TTAA 4 cut(s) 1101, 1298, 1386, 1412
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 965
TspGWI ACGGA 3 cut(s) 262, 562, 772
XapI RAATTY 3 cut(s) 90, 1148, 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XmnI GAANNNNTTC 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.