Rmu_co8389833.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8389833.1
OG0000526
Physical Location & Seq
Reverse (-)
1 .. 887
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8389833.1_g000001.1.cds

Sequence Viewer

Length: 448 bp
atgagtgagaaagaagccatagatagtgaagaaggttcatcaagttctgatagaaccaaaaaggaagaagcttttttatgttctgctaagcttcacatagaagaaatccggacccagaaattctctattggtaaaaaccaatcttttcctttaactcaagaccttcattttgctgtaaccaacctctcaaagcagctttatcaaaaagactcaaactttttgatggaactcatcctaaatgcagatgagaatgaatacagagaaggtgtggagccaactttggagtttgtgatgaccgaaaaagacataactgggactggagcaccagccactctgctggtttttaataatgaggttggattttccagggagaacatggattccatttgtggtatgggccattctacaaagaaggacaagagacagcagagtcttattggagagagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.82

Weight (kDa)

4.95

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 108
AcsI RAATTY 1 cut(s) 119
AjnI CCWGG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 365, 397
AluBI AGCT 3 cut(s) 71, 91, 196
AluI AGCT 3 cut(s) 71, 91, 196
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 415
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 2 cut(s) 111, 397
AvaII GGWCC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 415
BisI GCNGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 111, 397
BmiI GGNNCC 2 cut(s) 113, 273
BmrFI CCNGG 1 cut(s) 367
BmrI ACTGGG 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 316, 322
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 316, 322
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 113, 273
BsrI ACTGG 2 cut(s) 316, 322
BssECI CCNNGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 111, 397
CviAII CATG 1 cut(s) 376
CviJI RGCY 7 cut(s) 17, 71, 91, 196, 274, 329, 399
CviKI_1 RGCY 7 cut(s) 17, 71, 91, 196, 274, 329, 399
DdeI CTNAG 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 429
DseDI GACNNNNNNGTC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 365
FaeI CATG 1 cut(s) 379
FaiI YATR 6 cut(s) 20, 79, 98, 308, 377, 395
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 109
Hin1II CATG 1 cut(s) 379
HindIII AAGCTT 2 cut(s) 69, 89
HinfI GANTC 3 cut(s) 209, 380, 430
HpaII CCGG 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 109, 158
HpyAV CCTTC 4 cut(s) 26, 173, 257, 406
HpyCH4V TGCA 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 379
Kpn2I TCCGGA 1 cut(s) 108
LmnI GCTCC 2 cut(s) 271, 320
LpnPI CCDG 8 cut(s) 122, 128, 297, 303, 323, 339, 352, 379
Lsp1109I GCAGC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 3 cut(s) 41, 77, 113
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 119
MlyI GAGTC 2 cut(s) 203, 439
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 2 cut(s) 194, 346
MroI TCCGGA 1 cut(s) 108
MseI TTAA 2 cut(s) 152, 345
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 113, 273
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 2 cut(s) 203, 438
PpsI GAGTC 2 cut(s) 203, 438
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 113, 273
PspPI GGNCC 2 cut(s) 111, 397
SaqAI TTAA 2 cut(s) 152, 345
SatI GCNGC 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 111, 397
SchI GAGTC 2 cut(s) 203, 439
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 325
SetI ASST 8 cut(s) 37, 73, 93, 165, 186, 198, 268, 357
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 365
TaqII GACCGA 1 cut(s) 311
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 152, 345
Tru9I TTAA 2 cut(s) 152, 345
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 27, 155, 267
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 2 cut(s) 373, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.