Rmu_sc0006012.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006012.1
OG0000526
Physical Location & Seq
Reverse (-)
58105 .. 59945
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006012.1_g000010.1.cds

Sequence Viewer

Length: 447 bp
atgtttatcctccctttaaagccagataaggtggaagctgttcgagagcaactgtctaagttgcacccagagcttctcctctttttatccaagataaagtgtctatatgtacgtggttgtgatcctgaaggagctcaatcagtgtctatagtttctatacgtagccagactgatgatcaggatcttagaggcaaaacagccaagtctcatgttgttcaactttcagttaaagaaagcatgtgtgataatcaggatttgtcacgactagaaatatggcctatggccacagcagtattggaatgctcagtagtggagattacagataagctggaagaagaagtgcactcttgctcgtctaccaagatttcaagtgctcaagatgacatagagatggcttcagcagttactgaagcaactaagttcactacttgttcaagtgcatcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

4.95

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 356
AclWI GGATC 2 cut(s) 116, 189
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 3 cut(s) 147, 381, 429
AfaI GTAC 1 cut(s) 111
AgsI TTSAA 3 cut(s) 218, 369, 435
AluBI AGCT 4 cut(s) 38, 73, 134, 328
AluI AGCT 4 cut(s) 38, 73, 134, 328
Alw21I GWGCWC 3 cut(s) 136, 345, 376
Alw26I GTCTC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 2 cut(s) 116, 189
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 2 cut(s) 275, 282
ApaLI GTGCAC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 136
Bbv12I GWGCWC 3 cut(s) 136, 345, 376
BccI CCATC 1 cut(s) 385
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 360
BsaAI YACGTR 2 cut(s) 113, 161
BsaBI GATNNNNATC 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 345
BshFI GGCC 2 cut(s) 277, 284
BsiHKAI GWGCWC 3 cut(s) 136, 345, 376
BsmAI GTCTC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 277, 284
Bsp1286I GDGCHC 3 cut(s) 136, 345, 376
Bsp143I GATC 3 cut(s) 121, 175, 181
BspANI GGCC 2 cut(s) 277, 284
BspCNI CTCAG 1 cut(s) 317
BspPI GGATC 2 cut(s) 116, 189
BssMI GATC 3 cut(s) 121, 175, 181
Bst4CI ACNGT 1 cut(s) 54
BstBAI YACGTR 2 cut(s) 113, 161
BstDEI CTNAG 4 cut(s) 57, 185, 304, 417
BstKTI GATC 3 cut(s) 124, 178, 184
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 121, 175, 181
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 345
BstSNI TACGTA 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 277, 284
BtsIMutI CAGTG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 407
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 209, 238
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 4 cut(s) 57, 185, 304, 417
DpnI GATC 3 cut(s) 123, 177, 183
DpnII GATC 3 cut(s) 121, 175, 181
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 147, 381, 429
EcoICRI GAGCTC 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 2 cut(s) 212, 241
FaiI YATR 9 cut(s) 106, 108, 149, 158, 210, 239, 274, 281, 386
FatI CATG 2 cut(s) 208, 237
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 277, 284
Hin1II CATG 2 cut(s) 212, 241
Hpy166II GTNNAC 3 cut(s) 343, 357, 423
Hpy188III TCNNGA 6 cut(s) 44, 125, 179, 251, 261, 377
Hpy8I GTNNAC 3 cut(s) 343, 357, 423
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 2 cut(s) 112, 160
HpyCH4V TGCA 3 cut(s) 64, 343, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 4 cut(s) 57, 185, 304, 417
HpySE526I ACGT 2 cut(s) 112, 160
Hsp92II CATG 2 cut(s) 212, 241
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 3 cut(s) 121, 175, 181
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 36, 81, 138, 164, 179, 236, 314
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 112, 160
MaeIII GTNAC 2 cut(s) 258, 403
MalI GATC 3 cut(s) 123, 177, 183
MboI GATC 3 cut(s) 121, 175, 181
MboII GAAGA 2 cut(s) 344, 347
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 3 cut(s) 136, 345, 376
MlsI TGGCCA 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 284
MnlI CCTC 3 cut(s) 20, 89, 182
Mox20I TGGCCA 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 17, 228
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 121, 175, 181
NlaIII CATG 2 cut(s) 212, 241
NmuCI GTSAC 1 cut(s) 258
NspI RCATGY 1 cut(s) 241
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 39
Ppu21I YACGTR 2 cut(s) 113, 161
Psp124BI GAGCTC 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 17, 228
Sau3AI GATC 3 cut(s) 121, 175, 181
SduI GDGCHC 3 cut(s) 136, 345, 376
SetI ASST 7 cut(s) 33, 40, 75, 115, 136, 163, 330
SfcI CTRYAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SnaBI TACGTA 1 cut(s) 161
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 136
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 2 cut(s) 115, 163
TaqI TCGA 1 cut(s) 43
Tru1I TTAA 2 cut(s) 17, 228
Tru9I TTAA 2 cut(s) 17, 228
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspRI CASTG 1 cut(s) 147
VneI GTGCAC 1 cut(s) 341
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.