Rh6DG198000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000526
Physical Location & Seq
Forward (+)
35400026 .. 35400601
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG198000.1

Sequence Viewer

Length: 576 bp
ATGGCTCTTTTAATCAGTTTATATTCATTGAAGAATGTCTTGCATTCATCTCTGGACCTTGAAAAATACAGTGCAGCTTTGGACTTTCTAGGGGTGCCATTTGCTGATGACCAATGGTACATAAAGTGCATAAAATCCTCTAATCTTGTGTTGCATGTATCAGATAATGTTTATGTCGATCATCTTGGCTTCATTGCTGATAATGAGACAATATTTTCTTCAGAGTATTTTAAGAGCGTACCTCTTCTTAAATACATCGATCAGCAAGGGAATTTGAAATTTTGTTCAGTTACCAAAACCACCACAGAGGCGCCCAAGATAAGATGTGCTATGGAGCTTGAGACTCACAGATGGCTGAGTAAATGCAGTTTGTTGTTCAGATGTCCTGATACTATGTATTTCTTGCCCACTAGCACACAAAAAGCTCTGTTAAATAGAAGTTCCGATGAAACAAAGAAAAAACACAGGAGAAGTTCTTCTATCTGCAGACTGCAGTTGGCTTTCATACCATGCAGGAGTGAAGGCTTGTACAGCATATCATTATGCTTTTTTGCTTTGCAGTCATGTCGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.89

Weight (kDa)

8.54

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 94, 310
AcsI RAATTY 2 cut(s) 271, 278
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 311
AfaI GTAC 3 cut(s) 119, 240, 530
AgsI TTSAA 3 cut(s) 31, 62, 277
AluBI AGCT 3 cut(s) 77, 337, 425
AluI AGCT 3 cut(s) 77, 337, 425
Alw26I GTCTC 2 cut(s) 200, 335
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 271, 278
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 94, 310
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 345
BcgI CGANNNNNNTGC 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 200, 335
BfaI CTAG 2 cut(s) 89, 411
BfmI CTRYAG 2 cut(s) 484, 491
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 96, 312
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpuEI CTTGAG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 258
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 93
BshNI GGYRCC 2 cut(s) 94, 310
BshVI ATCGAT 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 200, 335
BsmI GAATGC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 2 cut(s) 178, 259
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 96, 312
BspMAI CTGCAG 2 cut(s) 488, 495
BspT107I GGYRCC 2 cut(s) 94, 310
BsrDI GCAATG 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 528
BssMI GATC 2 cut(s) 178, 259
BssNI GRCGYC 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 528
BstDEI CTNAG 1 cut(s) 356
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 181, 262
BstMAI GTCTC 2 cut(s) 200, 335
BstMBI GATC 2 cut(s) 178, 259
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNSI RCATGY 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 484, 491
BstV1I GCAGC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 3 cut(s) 118, 239, 529
CviAII CATG 3 cut(s) 155, 510, 564
CviJI RGCY 8 cut(s) 5, 77, 189, 337, 355, 425, 500, 525
CviKI_1 RGCY 8 cut(s) 5, 77, 189, 337, 355, 425, 500, 525
CviQI GTAC 3 cut(s) 118, 239, 529
DdeI CTNAG 1 cut(s) 356
DinI GGCGCC 1 cut(s) 312
DpnI GATC 2 cut(s) 180, 261
DpnII GATC 2 cut(s) 178, 259
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 312
EheI GGCGCC 1 cut(s) 312
FaeI CATG 3 cut(s) 158, 513, 567
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 3 cut(s) 154, 509, 563
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 89, 411
GlaI GCGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 314
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 3 cut(s) 158, 513, 567
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 163, 223, 380, 445
Hpy188III TCNNGA 3 cut(s) 53, 386, 569
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 9 cut(s) 43, 74, 129, 154, 366, 486, 493, 513, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 3 cut(s) 158, 513, 567
HspAI GCGC 1 cut(s) 311
KasI GGCGCC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 178, 259
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 4 cut(s) 38, 399, 451, 499
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 2 cut(s) 89, 411
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 180, 261
MboI GATC 2 cut(s) 178, 259
MboII GAAGA 4 cut(s) 43, 210, 236, 468
MluCI AATT 2 cut(s) 271, 278
Mly113I GGCGCC 1 cut(s) 311
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 3 cut(s) 148, 252, 301
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 4 cut(s) 11, 231, 249, 431
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 531
NarI GGCGCC 1 cut(s) 311
NdeII GATC 2 cut(s) 178, 259
NlaIII CATG 3 cut(s) 158, 513, 567
NlaIV GGNNCC 2 cut(s) 96, 312
NspI RCATGY 1 cut(s) 158
PctI GAATGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 475
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 337
PluTI GGCGCC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 96, 312
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 2 cut(s) 488, 495
RsaI GTAC 3 cut(s) 119, 240, 530
RsaNI GTAC 3 cut(s) 118, 239, 529
SaqAI TTAA 4 cut(s) 11, 231, 249, 431
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 178, 259
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 337
SetI ASST 5 cut(s) 60, 79, 244, 339, 427
SfcI CTRYAG 2 cut(s) 484, 491
SfoI GGCGCC 1 cut(s) 312
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 2 cut(s) 271, 278
SspDI GGCGCC 1 cut(s) 310
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 89, 411
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 177, 258
TasI AATT 2 cut(s) 271, 278
TatI WGTACW 1 cut(s) 528
Tru1I TTAA 4 cut(s) 11, 231, 249, 431
Tru9I TTAA 4 cut(s) 11, 231, 249, 431
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 5 cut(s) 15, 36, 181, 462, 493
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 271, 278
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 2 cut(s) 89, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.