RchiOBHm_Chr6g0275111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000526
Physical Location & Seq
Forward (+)
36769779 .. 36771370
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24680

Sequence Viewer

Length: 1362 bp
ATGTTGCTTGCAGGCATTGGATTTAAAAGTGTGTTTCTTGTGAGTTCACAGCCACACATATTCAGCAATGGATATCGTGTCAGATTTAATGAAGAACCAGATCAAAATTGTGGAATGATAAGGTGGAAGCTGTTCGAGAGCGCGCAACTGTCTAAGTTGCACCCAGAGCTTCTCCTCTTTTTATCCAAGATAAAGTGTCTATATGTACATGGTTGTAATCCTGAAGGAGCTCACTCAGTGTCTATAGTTTCTATATGTAGCCAGACTGATGATGAGGATCTTAGAGGCAAAACAGCCAAGTCTCATGTTGTTCAACTTTCAGTTAAAGAAAGCATGTGTGATAATCAGGATTTGTGCAAGTACTACTTGTGGGGAGAAGCATTTCCAGTTAAACCTGGGAATAGAGTTGGTATAAGGTCGGATGTGGAGAAATGGGTGGTTACCCTAGCTTTCCCATTTGGAGAAAGACTGAGACGGGGAACATCATGTATTGGTGTCTTTGCTTTCTTGCCAACAGCAATGGTCACAAACTTCCCATTTGTGATTCAAGCTGACTTCATTCTTGCCTCTTCTCGAGAATGTATACTATTAGACAATGTATGGAACTTGGGAATTCTTGAATGTGTTCCAACAGCATTTGTCAATGCTTTCAAGTTGCAAGGTCTAAAGATAGTGCCTCATGAAAGGTTTTCTGATAACAGCTCTACATTTTTCTTTTCACAGCCTCAGCATGCAGTTCGGATCTTGCCAAGATTTAGAGATATATTGGTTAAAATGGAAAGAAAAATGGCTCTTTTAATCAGTTTATATTCATTGAAGAATGTCTTGCATTCATCTCTGGACCTTGAAAAATACAGTGCAGCTTTGGACTTTCTAGGGGTGCCATTTGCTGATGACCAATGGTACATAAAGTGCATAAAATCCTCTAATCTTGTGTTGCATGTATCAGATAATGTTTATGTCGATCATCTTGGCTTCATTGCTGATAATGAGACAATATTTTCTTCAGAGTATTTTAAGAGCGTACCTCTTCTTAAATACATCGATCAGCAAGGGAATTTGAAATTTTGTTCAGTTACCAAAACCACCACAGAGGCGCCCAAGATAAGATGTGCTATGGAGCTTGAGACTCACAGATGGCTGAGTAAATGCAGTTTGTTGTTCAGATGTCCTGATACTATGTATTTCTTGCCCACTAGCACACAAAAAGCTCTGTTAAATAGAAGTTCCGATGAAACAAAGAAAAAACACAGGAGAAGTTCTTCTATCTGCAGACTGCAGTTGGCTTTCATACCATGCAGGAGTGAAGGCTTGTACAGCATATCATTATGCTTTTTTGCTTTGCAGTCATGTCGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

51.6

Weight (kDa)

8.7

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 880, 1096
AccI GTMKAC 1 cut(s) 583
AccII CGCG 1 cut(s) 143
AclWI GGATC 2 cut(s) 285, 749
AcsI RAATTY 3 cut(s) 612, 1057, 1064
AcuI CTGAAG 2 cut(s) 243, 990
AcyI GRCGYC 1 cut(s) 1097
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 5 cut(s) 207, 362, 905, 1026, 1316
AgsI TTSAA 7 cut(s) 314, 548, 620, 652, 817, 848, 1063
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 9 cut(s) 130, 169, 230, 449, 551, 702, 863, 1123, 1211
AluI AGCT 9 cut(s) 130, 169, 230, 449, 551, 702, 863, 1123, 1211
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 4 cut(s) 306, 466, 986, 1121
AlwI GGATC 2 cut(s) 285, 749
Ama87I CYCGRG 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 3 cut(s) 612, 1057, 1064
Asp700I GAANNNNTTC 4 cut(s) 131, 381, 624, 1261
AspLEI GCGC 3 cut(s) 143, 145, 1099
AspS9I GGNCC 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 841
BanI GGYRCC 2 cut(s) 880, 1096
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 1 cut(s) 872
BccI CCATC 1 cut(s) 1131
BcgI CGANNNNNNTGC 3 cut(s) 719, 753, 1334
BciT130I CCWGG 1 cut(s) 396
BcoDI GTCTC 4 cut(s) 306, 466, 986, 1121
BfaI CTAG 3 cut(s) 446, 875, 1197
BfmI CTRYAG 3 cut(s) 243, 1270, 1277
BfoI RGCGCY 1 cut(s) 1100
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 841
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 2 cut(s) 882, 1098
BmrFI CCNGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 1012, 1044
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 1145
Bsa29I ATCGAT 1 cut(s) 1044
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 1097
BsaJI CCNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 3 cut(s) 73, 525, 978
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 396
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 3 cut(s) 73, 525, 978
BseMII CTCAG 4 cut(s) 249, 461, 740, 1133
BseNI ACTGG 1 cut(s) 386
BsePI GCGCGC 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 872
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 880, 1096
BshVI ATCGAT 1 cut(s) 1044
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 573
BsmAI GTCTC 4 cut(s) 306, 466, 986, 1121
BsmBI CGTCTC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 829
BsoBI CYCGRG 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 232
Bsp1407I TGTACA 2 cut(s) 205, 1314
Bsp143I GATC 5 cut(s) 100, 277, 741, 964, 1045
BspCNI CTCAG 4 cut(s) 248, 462, 739, 1134
BspDI ATCGAT 1 cut(s) 1044
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 882, 1098
BspMAI CTGCAG 2 cut(s) 1274, 1281
BspPI GGATC 2 cut(s) 285, 749
BspT107I GGYRCC 2 cut(s) 880, 1096
BsrDI GCAATG 3 cut(s) 73, 525, 978
BsrGI TGTACA 2 cut(s) 205, 1314
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 395
BssHII GCGCGC 1 cut(s) 141
BssMI GATC 5 cut(s) 100, 277, 741, 964, 1045
BssNAI GTATAC 1 cut(s) 584
BssNI GRCGYC 1 cut(s) 1097
Bst1107I GTATAC 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 150, 857
Bst6I CTCTTC 2 cut(s) 574, 1035
BstACI GRCGYC 1 cut(s) 1097
BstAUI TGTACA 2 cut(s) 205, 1314
BstC8I GCNNGC 4 cut(s) 9, 13, 143, 732
BstDEI CTNAG 6 cut(s) 153, 235, 281, 470, 726, 1142
BstEII GGTNACC 1 cut(s) 439
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 3 cut(s) 143, 145, 1099
BstKTI GATC 5 cut(s) 103, 280, 744, 967, 1048
BstMAI GTCTC 4 cut(s) 306, 466, 986, 1121
BstMBI GATC 5 cut(s) 100, 277, 741, 964, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 166, 1317
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 3 cut(s) 337, 734, 944
BstPI GGTNACC 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 3 cut(s) 243, 1270, 1277
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 2 cut(s) 277, 741
BstYI RGATCY 2 cut(s) 277, 741
BstZ17I GTATAC 1 cut(s) 584
Bsu15I ATCGAT 1 cut(s) 1044
BsuTUI ATCGAT 1 cut(s) 1044
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 243, 862
Cac8I GCNNGC 4 cut(s) 9, 13, 143, 732
CciI TCATGA 1 cut(s) 679
CfoI GCGC 3 cut(s) 143, 145, 1099
Cfr13I GGNCC 1 cut(s) 841
ClaI ATCGAT 1 cut(s) 1044
Csp6I GTAC 5 cut(s) 206, 361, 904, 1025, 1315
CviAII CATG 9 cut(s) 209, 305, 334, 486, 680, 731, 941, 1296, 1350
CviQI GTAC 5 cut(s) 206, 361, 904, 1025, 1315
DdeI CTNAG 6 cut(s) 153, 235, 281, 470, 726, 1142
DinI GGCGCC 1 cut(s) 1098
DpnI GATC 5 cut(s) 102, 279, 743, 966, 1047
DpnII GATC 5 cut(s) 100, 277, 741, 964, 1045
DraI TTTAAA 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 574, 1035
EarI CTCTTC 2 cut(s) 574, 1035
Ecl136II GAGCTC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 841
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 243, 990
Eco88I CYCGRG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 1098
EheI GGCGCC 1 cut(s) 1098
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 9 cut(s) 212, 308, 337, 489, 683, 734, 944, 1299, 1353
FalI AAGNNNNNCTT 4 cut(s) 350, 382, 809, 841
FatI CATG 9 cut(s) 208, 304, 333, 485, 679, 730, 940, 1295, 1349
FblI GTMKAC 1 cut(s) 583
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 3 cut(s) 446, 875, 1197
GlaI GCGC 3 cut(s) 142, 144, 1098
GluI GCNGC 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 1100
HhaI GCGC 3 cut(s) 143, 145, 1099
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 9 cut(s) 212, 308, 337, 489, 683, 734, 944, 1299, 1353
Hin6I GCGC 3 cut(s) 141, 143, 1097
HinP1I GCGC 3 cut(s) 141, 143, 1097
HinfI GANTC 2 cut(s) 544, 1129
Hpy166II GTNNAC 2 cut(s) 47, 584
Hpy188I TCNGA 8 cut(s) 83, 421, 694, 741, 949, 1009, 1166, 1231
Hpy8I GTNNAC 2 cut(s) 47, 584
HpyAV CCTTC 2 cut(s) 218, 1301
HpyCH4III ACNGT 2 cut(s) 150, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 1317
HpyF3I CTNAG 6 cut(s) 153, 235, 281, 470, 726, 1142
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 9 cut(s) 212, 308, 337, 489, 683, 734, 944, 1299, 1353
HspAI GCGC 3 cut(s) 141, 143, 1097
KasI GGCGCC 1 cut(s) 1096
Kzo9I GATC 5 cut(s) 100, 277, 741, 964, 1045
LmnI GCTCC 2 cut(s) 227, 1120
Lsp1109I GCAGC 1 cut(s) 872
MaeI CTAG 3 cut(s) 446, 875, 1197
MaeIII GTNAC 3 cut(s) 439, 523, 1075
MalI GATC 5 cut(s) 102, 279, 743, 966, 1047
MboI GATC 5 cut(s) 100, 277, 741, 964, 1045
MboII GAAGA 6 cut(s) 104, 561, 829, 996, 1022, 1254
MflI RGATCY 2 cut(s) 277, 741
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 4 cut(s) 106, 612, 1057, 1064
Mly113I GGCGCC 1 cut(s) 1097
MlyI GAGTC 1 cut(s) 1123
MmeI TCCRAC 2 cut(s) 399, 653
MnlI CCTC 9 cut(s) 185, 268, 278, 577, 687, 735, 934, 1038, 1087
MroXI GAANNNNTTC 4 cut(s) 131, 381, 624, 1261
MseI TTAA 9 cut(s) 24, 87, 324, 390, 771, 797, 1017, 1035, 1217
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 166, 1317
NarI GGCGCC 1 cut(s) 1097
NdeII GATC 5 cut(s) 100, 277, 741, 964, 1045
NlaIII CATG 9 cut(s) 212, 308, 337, 489, 683, 734, 944, 1299, 1353
NlaIV GGNNCC 2 cut(s) 882, 1098
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 3 cut(s) 337, 734, 944
PaeI GCATGC 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 1 cut(s) 679
PauI GCGCGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 4 cut(s) 131, 381, 624, 1261
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 1 cut(s) 1123
PluTI GGCGCC 1 cut(s) 1100
PpsI GAGTC 1 cut(s) 1123
Psp124BI GAGCTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 882, 1098
PspPI GGNCC 1 cut(s) 841
PstI CTGCAG 2 cut(s) 1274, 1281
PsuI RGATCY 2 cut(s) 277, 741
PteI GCGCGC 1 cut(s) 141
RsaI GTAC 5 cut(s) 207, 362, 905, 1026, 1316
RsaNI GTAC 5 cut(s) 206, 361, 904, 1025, 1315
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 9 cut(s) 24, 87, 324, 390, 771, 797, 1017, 1035, 1217
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 5 cut(s) 100, 277, 741, 964, 1045
Sau96I GGNCC 1 cut(s) 841
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 1123
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 232
SfcI CTRYAG 3 cut(s) 243, 1270, 1277
SfoI GGCGCC 1 cut(s) 1098
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 841
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 573, 1124
SmoI CTYRAG 2 cut(s) 573, 1124
SphI GCATGC 1 cut(s) 734
Sse9I AATT 4 cut(s) 106, 612, 1057, 1064
SspDI GGCGCC 1 cut(s) 1096
SspI AATATT 1 cut(s) 999
SspMI CTAG 3 cut(s) 446, 875, 1197
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 150, 857
TaqI TCGA 4 cut(s) 135, 574, 963, 1044
TasI AATT 4 cut(s) 106, 612, 1057, 1064
TatI WGTACW 3 cut(s) 205, 360, 1314
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 9 cut(s) 24, 87, 324, 390, 771, 797, 1017, 1035, 1217
Tru9I TTAA 9 cut(s) 24, 87, 324, 390, 771, 797, 1017, 1035, 1217
TscAI CASTG 2 cut(s) 243, 862
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 8 cut(s) 105, 547, 696, 801, 822, 967, 1248, 1279
TspRI CASTG 2 cut(s) 243, 862
VpaK11BI GGWCC 1 cut(s) 841
XapI RAATTY 3 cut(s) 612, 1057, 1064
XceI RCATGY 3 cut(s) 337, 734, 944
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 583
XmnI GAANNNNTTC 4 cut(s) 131, 381, 624, 1261
XspI CTAG 3 cut(s) 446, 875, 1197
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.