Rh2DG502500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000526
Physical Location & Seq
Reverse (-)
72332943 .. 72335639
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG502500.1

Sequence Viewer

Length: 228 bp
ATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTACCGGCCTCTACAACATTGCTATTTCTGGTCTCAATGATGCCTTGTGGGAAAGAATTCATTGCCTGGTACCGGCCTCTACAACACTCATAAATGACTGTAATTTTGGGCACGCCATTAAAATGGCCTTAGAATCCGAAAAGTATTGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

5.82

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 74, 142
AccB1I GGYRCC 2 cut(s) 74, 142
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 2 cut(s) 76, 144
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 40, 110
AoxI GGCC 3 cut(s) 79, 147, 198
ApoI RAATTY 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 2 cut(s) 74, 142
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 2 cut(s) 74, 142
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 40, 110
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 76, 144
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 77, 145
Bse3DI GCAATG 2 cut(s) 90, 133
BseBI CCWGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 90, 133
BseSI GKGCMC 1 cut(s) 186
BshFI GGCC 3 cut(s) 81, 149, 200
BshNI GGYRCC 2 cut(s) 74, 142
BsiSI CCGG 2 cut(s) 78, 146
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 40, 110
BsnI GGCC 3 cut(s) 81, 149, 200
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 186
BspACI CCGC 1 cut(s) 15
BspANI GGCC 3 cut(s) 81, 149, 200
BspLI GGNNCC 2 cut(s) 76, 144
BspT107I GGYRCC 2 cut(s) 74, 142
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 90, 133
BsrFI RCCGGY 2 cut(s) 77, 145
BssAI RCCGGY 2 cut(s) 77, 145
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 202
BstMAI GTCTC 2 cut(s) 40, 110
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 196
BsuRI GGCC 3 cut(s) 81, 149, 200
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 77, 145
Csp6I GTAC 2 cut(s) 75, 143
CviJI RGCY 3 cut(s) 81, 149, 200
CviKI_1 RGCY 3 cut(s) 81, 149, 200
CviQI GTAC 2 cut(s) 75, 143
DdeI CTNAG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 138
FaiI YATR 3 cut(s) 20, 164, 226
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 3 cut(s) 81, 149, 200
HapII CCGG 2 cut(s) 78, 146
HinfI GANTC 2 cut(s) 5, 206
HpaII CCGG 2 cut(s) 78, 146
Hpy188I TCNGA 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 202
KpnI GGTACC 2 cut(s) 78, 146
LpnPI CCDG 5 cut(s) 87, 91, 125, 152, 159
LweI GCATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 60, 129, 175
MnlI CCTC 3 cut(s) 48, 92, 160
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 59, 192
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 78, 146
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 76, 144
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 5, 206
PkrI GCNGC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 76, 144
RsaI GTAC 2 cut(s) 76, 144
RsaNI GTAC 2 cut(s) 75, 143
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 59, 192
SatI GCNGC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 186
SetI ASST 1 cut(s) 59
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 7 cut(s) 90, 114, 130, 151, 152, 158, 197
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 3 cut(s) 60, 129, 175
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 173
TasI AATT 3 cut(s) 60, 129, 175
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 5, 206
Tru1I TTAA 2 cut(s) 59, 192
Tru9I TTAA 2 cut(s) 59, 192
TspDTI ATGAA 1 cut(s) 122
XapI RAATTY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.