Rmu_co8294311.1_g000001

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8294311.1
OG0000526
Physical Location & Seq
Reverse (-)
2 .. 758
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8294311.1_g000001.1.cds

Sequence Viewer

Length: 757 bp
atgaagaacataccattgataaaatatgcagactgtagaaatgaatctttatgcagcataagcgaaatccagaaaggtgaatgtagagttttcttatcgagcaaaagttctcatgtttcatggctgattgattgcaaccgggaatttaattctgtgactcgtcttctctttatgccaaaagccactcaggaagctatctgggcatgctctgggaaggatacattgaagaaatggctagctgatcaagctaaggttggttctgttgatgtcaataaatatgcagttgatctacttcagaattctcttcatgagcggaagcttgttattgcatatgttcatttcttatatcactcggttgataataattttatctcaagtcgggaagttgaccgtttatgtggaattatgccactagtggatggctatgggaacatcatcagaagtagaaaaggcgttgttgttgttcctgccaatggaagcaaatgggcgggattgactgattctaatttgtggagaaaagaaggccatgttgaattaggggagcattatatgtattctggctacttttctggtaagtatacaccggagaagaagcttcttgagttccttataaaacatgttgctgctttggatgtccctcatatttctgccccaagtgatggtatcacgtctgtatctgcaccactaactaagcagaatgccttcttgcttttggattggattcgtcaactgaattataaaagggttggcatccctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

252

Amino Acids

28.46

Weight (kDa)

9.03

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 611, 738
AccB7I CCANNNNNTGG 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 578
AciI CCGC 2 cut(s) 313, 488
AcsI RAATTY 2 cut(s) 143, 298
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 473, 659
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 2 cut(s) 226, 533
AhlI ACTAGT 1 cut(s) 412
AjiI CACGTC 1 cut(s) 669
AluBI AGCT 5 cut(s) 194, 239, 248, 319, 595
AluI AGCT 5 cut(s) 194, 239, 248, 319, 595
AoxI GGCC 1 cut(s) 523
ApeKI GCWGC 2 cut(s) 54, 623
ApoI RAATTY 2 cut(s) 143, 298
Asp700I GAANNNNTTC 1 cut(s) 701
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 235
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 66, 610
BccI CCATC 2 cut(s) 413, 653
BciVI GTATCC 1 cut(s) 211
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 140
BcuI ACTAGT 1 cut(s) 412
BfaI CTAG 2 cut(s) 236, 413
BfmI CTRYAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 2 cut(s) 55, 624
BlsI GCNGC 2 cut(s) 56, 625
Bme1390I CCNGG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 669
BmrFI CCNGG 1 cut(s) 140
BmtI GCTAGC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 2 cut(s) 358, 620
BpuMI CCSGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 659
BseGI GGATG 3 cut(s) 424, 637, 750
BseLI CCNNNNNNNGG 2 cut(s) 473, 659
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 66, 610
BsgI GTGCAG 1 cut(s) 663
BshFI GGCC 1 cut(s) 525
BsiSI CCGG 2 cut(s) 139, 584
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 473, 659
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 525
Bsp143I GATC 2 cut(s) 241, 286
BspACI CCGC 2 cut(s) 313, 488
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 307
BspOI GCTAGC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 313
BssMI GATC 2 cut(s) 241, 286
BssNAI GTATAC 1 cut(s) 579
Bst1107I GTATAC 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 35, 392
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 205, 237
BstDEI CTNAG 3 cut(s) 186, 249, 690
BstF5I GGATG 3 cut(s) 424, 637, 750
BstKTI GATC 2 cut(s) 244, 289
BstMBI GATC 2 cut(s) 241, 286
BstMWI GCNNNNNNNGC 3 cut(s) 60, 200, 245
BstNSI RCATGY 2 cut(s) 207, 620
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 66, 610
BstV2I GAAGAC 1 cut(s) 155
BstZ17I GTATAC 1 cut(s) 579
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 525
BtrI CACGTC 1 cut(s) 669
BtsCI GGATG 3 cut(s) 424, 637, 750
Cac8I GCNNGC 2 cut(s) 205, 237
CciI TCATGA 1 cut(s) 307
CviAII CATG 6 cut(s) 113, 120, 204, 308, 527, 617
DdeI CTNAG 3 cut(s) 186, 249, 690
DpnI GATC 2 cut(s) 243, 288
DpnII GATC 2 cut(s) 241, 286
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 298
FaeI CATG 6 cut(s) 116, 123, 207, 311, 530, 620
FaqI GGGAC 1 cut(s) 620
FatI CATG 6 cut(s) 112, 119, 203, 307, 526, 616
FauI CCCGC 1 cut(s) 481
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 2 cut(s) 55, 624
FokI GGATG 3 cut(s) 431, 644, 737
Fsp4HI GCNGC 2 cut(s) 55, 624
FspBI CTAG 2 cut(s) 236, 413
GluI GCNGC 2 cut(s) 55, 624
HaeIII GGCC 1 cut(s) 525
HapII CCGG 2 cut(s) 139, 584
Hin1II CATG 6 cut(s) 116, 123, 207, 311, 530, 620
HincII GTYRAC 2 cut(s) 388, 728
HindII GTYRAC 2 cut(s) 388, 728
HindIII AAGCTT 2 cut(s) 317, 593
HinfI GANTC 4 cut(s) 44, 157, 500, 721
HpaII CCGG 2 cut(s) 139, 584
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 388, 579, 728
Hpy188I TCNGA 2 cut(s) 297, 440
Hpy188III TCNNGA 5 cut(s) 70, 188, 308, 380, 599
Hpy8I GTNNAC 3 cut(s) 388, 579, 728
HpyAV CCTTC 3 cut(s) 208, 515, 712
HpyCH4III ACNGT 2 cut(s) 35, 392
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 6 cut(s) 29, 54, 135, 281, 329, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 200, 245
HpyF3I CTNAG 3 cut(s) 186, 249, 690
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 6 cut(s) 116, 123, 207, 311, 530, 620
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 241, 286
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 9 cut(s) 83, 152, 173, 184, 195, 480, 543, 555, 597
Lsp1109I GCAGC 2 cut(s) 66, 610
MaeI CTAG 2 cut(s) 236, 413
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 243, 288
MbiI CCGCTC 1 cut(s) 313
MboI GATC 2 cut(s) 241, 286
MboII GAAGA 5 cut(s) 16, 155, 238, 296, 601
MluCI AATT 8 cut(s) 143, 148, 298, 364, 402, 505, 533, 733
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 1 cut(s) 147
MspI CCGG 2 cut(s) 139, 584
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 703
MwoI GCNNNNNNNGC 3 cut(s) 60, 200, 245
NciI CCSGG 1 cut(s) 140
NdeI CATATG 1 cut(s) 331
NdeII GATC 2 cut(s) 241, 286
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 6 cut(s) 116, 123, 207, 311, 530, 620
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 207, 620
PaeI GCATGC 1 cut(s) 207
PagI TCATGA 1 cut(s) 307
PciI ACATGT 1 cut(s) 616
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 44, 500, 721
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 2 cut(s) 56, 625
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PscI ACATGT 1 cut(s) 616
PsiI TTATAA 2 cut(s) 611, 738
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 55, 624
Sau3AI GATC 2 cut(s) 241, 286
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 140
SetI ASST 8 cut(s) 79, 196, 241, 250, 255, 321, 597, 671
SfcI CTRYAG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 373, 599
SmoI CTYRAG 2 cut(s) 373, 599
SpeI ACTAGT 1 cut(s) 412
SphI GCATGC 1 cut(s) 207
Sse9I AATT 8 cut(s) 143, 148, 298, 364, 402, 505, 533, 733
SsiI CCGC 2 cut(s) 313, 488
SspMI CTAG 2 cut(s) 236, 413
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 35, 392
TaiI ACGT 1 cut(s) 671
TaqI TCGA 1 cut(s) 98
TasI AATT 8 cut(s) 143, 148, 298, 364, 402, 505, 533, 733
TfiI GAWTC 3 cut(s) 44, 500, 721
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 54, 623
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 5 cut(s) 17, 57, 108, 296, 326
Van91I CCANNNNNTGG 1 cut(s) 659
XapI RAATTY 2 cut(s) 143, 298
XceI RCATGY 2 cut(s) 207, 620
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 2 cut(s) 236, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.