RchiOBHm_Chr6g0249321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000526
Physical Location & Seq
Forward (+)
5232374 .. 5234746
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22351

Sequence Viewer

Length: 489 bp
ATGGATTCTGATTTTGCTGTGAAGTTAATTTCTTCATTTTGGCTGTCAGATCTACTTGTTCTCAAATGCTCTGGTCTTCCCCCGAGAGTCCATGGATATCTGAACGCTGAAGAGAATGAATACGAAGAAGGTGTAGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACGTAACAGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTAATTTCTTGTTAGACTTTGGAATGTTGATAACTTTATGTATCTATGAGCTCGAGCTTTGTCATTTGATCAATCTGTGTTTCTTGTGGTTGAGTAATGTTTCCTACAGGCACTTTTATAATTTCTGGTTTAGACGTTTTCGATGTTCTTTTATGCATCCTTCAGTTCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.95

Weight (kDa)

5.09

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AciI CCGC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 129, 459
AgsI TTSAA 2 cut(s) 211, 305
AjnI CCWGG 1 cut(s) 230
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 194, 364, 370
AluI AGCT 3 cut(s) 194, 364, 370
Alw21I GWGCWC 2 cut(s) 190, 366
Alw26I GTCTC 2 cut(s) 173, 280
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 2 cut(s) 82, 365
ApoI RAATTY 1 cut(s) 149
AvaI CYCGRG 2 cut(s) 82, 365
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 68, 174
Bbv12I GWGCWC 2 cut(s) 190, 366
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 173, 280
BfmI CTRYAG 1 cut(s) 418
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 82, 365
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 68, 174
BpmI CTGGAG 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 91, 162, 231
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 91, 162, 231
BseGI GGATG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 190, 366
BsiHKCI CYCGRG 2 cut(s) 82, 365
BsmAI GTCTC 2 cut(s) 173, 280
BsoBI CYCGRG 2 cut(s) 82, 365
Bsp1286I GDGCHC 2 cut(s) 190, 366
Bsp143I GATC 2 cut(s) 49, 381
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 91, 162, 231
BssMI GATC 2 cut(s) 49, 381
BssT1I CCWWGG 2 cut(s) 91, 162
Bst2UI CCWGG 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 105, 300
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 2 cut(s) 52, 384
BstMAI GTCTC 2 cut(s) 173, 280
BstMBI GATC 2 cut(s) 49, 381
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 68, 174
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 182
CviAII CATG 2 cut(s) 92, 241
CviJI RGCY 5 cut(s) 43, 194, 225, 364, 370
CviKI_1 RGCY 5 cut(s) 43, 194, 225, 364, 370
DpnI GATC 2 cut(s) 51, 383
DpnII GATC 2 cut(s) 49, 381
Eam1104I CTCTTC 2 cut(s) 105, 300
EarI CTCTTC 2 cut(s) 105, 300
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 91, 162
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 2 cut(s) 129, 459
Eco88I CYCGRG 2 cut(s) 82, 365
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 91, 162
EcoT22I ATGCAT 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 2 cut(s) 91, 162
FaeI CATG 2 cut(s) 95, 244
FaiI YATR 7 cut(s) 93, 242, 260, 352, 360, 432, 467
FatI CATG 2 cut(s) 91, 240
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 204
Hin1II CATG 2 cut(s) 95, 244
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 3 cut(s) 5, 87, 245
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 10, 49, 102
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 122, 483
HpyCH4IV ACGT 2 cut(s) 171, 448
HpyCH4V TGCA 1 cut(s) 469
HpySE526I ACGT 2 cut(s) 171, 448
Hsp92II CATG 2 cut(s) 95, 244
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 2 cut(s) 49, 381
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 57, 153, 168, 204, 217, 244, 406, 424
LweI GCATC 1 cut(s) 478
MaeII ACGT 2 cut(s) 171, 448
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 51, 383
MboI GATC 2 cut(s) 49, 381
MboII GAAGA 6 cut(s) 24, 68, 122, 137, 179, 317
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 190, 366
MluCI AATT 5 cut(s) 27, 149, 300, 316, 433
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 471
MseI TTAA 2 cut(s) 26, 299
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 91
NdeII GATC 2 cut(s) 49, 381
NlaIII CATG 2 cut(s) 95, 244
NsiI ATGCAT 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 365
PfeI GAWTC 2 cut(s) 5, 245
PkrI GCNGC 1 cut(s) 257
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 49
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 26, 299
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 2 cut(s) 49, 381
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 2 cut(s) 190, 366
SetI ASST 7 cut(s) 133, 174, 196, 299, 366, 372, 451
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 5 cut(s) 27, 149, 300, 316, 433
SsiI CCGC 1 cut(s) 255
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 91, 162
TaiI ACGT 2 cut(s) 174, 451
TaqI TCGA 2 cut(s) 366, 454
TasI AATT 5 cut(s) 27, 149, 300, 316, 433
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 2 cut(s) 5, 245
Tru1I TTAA 2 cut(s) 26, 299
Tru9I TTAA 2 cut(s) 26, 299
TspDTI ATGAA 4 cut(s) 24, 132, 161, 231
XapI RAATTY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.