Rroxscaffold_3G00265690

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
59091702 .. 59099231
7530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265690.1

Sequence Viewer

Length: 1641 bp
ATGGTCACCAACTTTCCATTCATAATACAGGCGGATTTTCTTTTAGCATCTTCAAGAGAGACAATCCTACTAGACAACAAGTGGAATCAAGGGATTCTTGACTGTGTGCCCACCGCATTTGCCCATGCCTTTAACTCTCTTGTGAAAACTGTGGAAGGTGCGCCAACATCAAGTTTGGCTCCTATGTTCAGATTCTTGCCTGTTCAGGGTTCTTCCTATAAAGAATTAAATGCTGTAAGGGAGTCAATAAAAGCAAAGATGGTTGACGAAGACATTATACCAGTTGAGCCTGAAATGGTGCAGAGGTTCTTCCACAAGCCTCGTGAAGTGGGAAGATTAATGCCTGCCTTTTGGACTATTTTGAGGAAGGCGACGGTTCAAGGTGTAAGCTTGATTAAGCTTTCATCACATGGAAGATTTGTTCTGTCTTATTCCTTTGATAGCAAGGAATATGATCCTATACTAAGTTTCCTTGGAGTTGAACCAGTGAATGATGACTGGTATGTTAAATGCATACAGGGTACTTCTAATCTTGTTGATGGAGTGTCAGAAGATGTGTACTTAGAGCTTCTACTGTTTATTGCTGACCATTGGGGTTCTAAATTTGGTCACACCAACATGAAGAACATACCATTGATAAAATATGCAGCCTATGGAAATGAATCTTTATGCAGCATAAGCCAAATCCAGAAAGGTGAATGTAGAGTTTTCTTATCGAGCAAATGTTATCGTGTTTCATGGCTAATTGATTGCAACCGGGAATTTAATTCTGTGACTCGTCTTCTCTTTATGCCAAAAGCCACTCGGGAAACCATCTGGGCATGCTCTGGGAAGGATACATTGAAGAAATGGCTAGCTGATGAAGCTAAAGTTCGTTCCGTTGATGTCAATCAATATGCAGTTGATCTCCTTCAGAATTCTCTTAATGAGCGGAAGCTTGTTATTGCATATGTTCATTTCTTATATCACTCCTTGGATAATGATTTCATCTCAAGTCGGGAAGTTGACCGTTTATGTGGAAGTATGCCACTAGTGGATAGCTATGGGAACATTAATAGGAGTAGGAAATGGGTTGTTGTTCCTGCCGATGGAAGCAAATGGGCAGGACTCACTATTAGAAATCTGTTCATTTACATCACGTCATTTAAATCGGCCAGACTTGCACATGATGTAAAAAACCATCGATGTCAACCCCCGAAAGATTATGTTCGGGCTGTTCAATCTATTAAGAACTCCTGTATAACTCCTTACTTGGAAGCTGAAAGTGCATGCATTCAAAATATGCAGGATATATCGCAGCTAAAGTATGGCAGTGCTTCTAATTTGAGCAATACATATATTGAAATGCTTGAAGATTGTGATAGATTGGACAATGAATCTGTTGTGCATATTGGGTCAACCTCTTATGAAGTGATAAATCCTTTCATGTTAAACAGCTATTTTGATTATGGGATAGAACAAATTGAAATTGTTTTTGTTCCTAGAATCACCAGTACCATTTCTCTTGAGGAAAAGAGAGGAGACAATCTGTGGGAGGCAAGAGCTGTCAAGAAGAGAAAACAAGAAGAGTATACAGAACATATAAGGTGTGCATTCTTTGGTATGCCAAAATTGAATGAATCTTCATTTTGGCTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

62.43

Weight (kDa)

6.62

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 931
AccI GTMKAC 1 cut(s) 1571
AciI CCGC 3 cut(s) 32, 114, 931
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 1152
AcsI RAATTY 3 cut(s) 602, 761, 916
AcuI CTGAAG 1 cut(s) 896
AfaI GTAC 3 cut(s) 523, 560, 1495
AfiI CCNNNNNNNGG 2 cut(s) 206, 1088
AhlI ACTAGT 1 cut(s) 1030
AjiI CACGTC 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
Alw26I GTCTC 2 cut(s) 53, 1515
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 1 cut(s) 1152
ApeKI GCWGC 3 cut(s) 647, 672, 1297
ApoI RAATTY 3 cut(s) 602, 761, 916
AseI ATTAAT 2 cut(s) 338, 1053
AspLEI GCGC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 2 cut(s) 707, 1480
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 804
BaeGI GKGCMC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
BauI CACGAG 2 cut(s) 321, 1636
BbsI GAAGAC 2 cut(s) 276, 773
BbvI GCAGC 3 cut(s) 659, 684, 1309
BccI CCATC 5 cut(s) 253, 533, 821, 1082, 1188
BciVI GTATCC 1 cut(s) 829
BcnI CCSGG 1 cut(s) 758
BcoDI GTCTC 2 cut(s) 53, 1515
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 4 cut(s) 71, 854, 1031, 1482
BfuI GTATCC 1 cut(s) 829
BisI GCNGC 3 cut(s) 648, 673, 1298
BlsI GCNGC 3 cut(s) 649, 674, 1299
Bme1390I CCNGG 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 804
BmgBI CACGTC 1 cut(s) 1140
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 758
BmsI GCATC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 857
BpiI GAAGAC 2 cut(s) 276, 773
BpuEI CTTGAG 2 cut(s) 976, 1526
BpuMI CCSGG 1 cut(s) 758
Bsa29I ATCGAT 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 888
BsaJI CCNNGG 2 cut(s) 472, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 1088
Bse1I ACTGG 4 cut(s) 281, 485, 503, 1491
Bse8I GATNNNNATC 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 1183
BseDI CCNNGG 2 cut(s) 472, 972
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 2 cut(s) 206, 1088
BseNI ACTGG 4 cut(s) 281, 485, 503, 1491
BseRI GAGGAG 1 cut(s) 1533
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 3 cut(s) 659, 684, 1309
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 1 cut(s) 1154
BshVI ATCGAT 1 cut(s) 1183
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 1 cut(s) 757
BslI CCNNNNNNNGG 2 cut(s) 206, 1088
BsmAI GTCTC 2 cut(s) 53, 1515
BsmI GAATGC 2 cut(s) 1272, 1592
BsnI GGCC 1 cut(s) 1154
BsoBI CYCGRG 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 454, 904
BspACI CCGC 3 cut(s) 32, 114, 931
BspANI GGCC 1 cut(s) 1154
BspDI ATCGAT 1 cut(s) 1183
BspLI GGNNCC 1 cut(s) 180
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 931
BsrI ACTGG 4 cut(s) 281, 485, 503, 1491
BssECI CCNNGG 2 cut(s) 472, 972
BssMI GATC 2 cut(s) 454, 904
BssNAI GTATAC 1 cut(s) 1572
BssSI CACGAG 2 cut(s) 321, 1636
BssT1I CCWWGG 2 cut(s) 472, 972
Bst1107I GTATAC 1 cut(s) 1572
Bst2BI CACGAG 2 cut(s) 321, 1636
Bst4CI ACNGT 5 cut(s) 104, 151, 376, 576, 1010
Bst6I CTCTTC 2 cut(s) 1547, 1560
BstC8I GCNNGC 4 cut(s) 345, 823, 855, 1270
BstDEI CTNAG 2 cut(s) 464, 562
BstEII GGTNACC 1 cut(s) 4
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 457, 907
BstMAI GTCTC 2 cut(s) 53, 1515
BstMBI GATC 2 cut(s) 454, 904
BstMWI GCNNNNNNNGC 4 cut(s) 678, 863, 1160, 1265
BstNSI RCATGY 2 cut(s) 825, 1272
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 659, 684, 1309
BstV2I GAAGAC 2 cut(s) 276, 773
BstZ17I GTATAC 1 cut(s) 1572
Bsu15I ATCGAT 1 cut(s) 1183
BsuI GTATCC 1 cut(s) 829
BsuRI GGCC 1 cut(s) 1154
BsuTUI ATCGAT 1 cut(s) 1183
BtrI CACGTC 1 cut(s) 1140
BtsI GCAGTG 1 cut(s) 1318
BtsIMutI CAGTG 2 cut(s) 492, 1318
Cac8I GCNNGC 4 cut(s) 345, 823, 855, 1270
CfoI GCGC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 1183
Csp6I GTAC 3 cut(s) 522, 559, 1494
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 8 cut(s) 125, 410, 619, 738, 822, 1166, 1269, 1426
CviQI GTAC 3 cut(s) 522, 559, 1494
DdeI CTNAG 2 cut(s) 464, 562
DpnI GATC 2 cut(s) 456, 906
DpnII GATC 2 cut(s) 454, 904
DraI TTTAAA 1 cut(s) 1147
EaeI YGGCCR 1 cut(s) 1152
Eam1104I CTCTTC 2 cut(s) 1547, 1560
EarI CTCTTC 2 cut(s) 1547, 1560
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 472, 972
Eco57I CTGAAG 1 cut(s) 896
Eco88I CYCGRG 1 cut(s) 804
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 916
EcoT14I CCWWGG 2 cut(s) 472, 972
EcoT22I ATGCAT 2 cut(s) 515, 1274
ErhI CCWWGG 2 cut(s) 472, 972
FaeI CATG 8 cut(s) 128, 413, 622, 741, 825, 1169, 1272, 1429
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 8 cut(s) 124, 409, 618, 737, 821, 1165, 1268, 1425
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 1 cut(s) 1571
Fnu4HI GCNGC 3 cut(s) 648, 673, 1298
Fsp4HI GCNGC 3 cut(s) 648, 673, 1298
FspBI CTAG 4 cut(s) 71, 854, 1031, 1482
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 648, 673, 1298
HaeIII GGCC 1 cut(s) 1154
HapII CCGG 1 cut(s) 757
HhaI GCGC 1 cut(s) 163
Hin1II CATG 8 cut(s) 128, 413, 622, 741, 825, 1169, 1272, 1429
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 4 cut(s) 265, 1006, 1190, 1398
HindII GTYRAC 4 cut(s) 265, 1006, 1190, 1398
HindIII AAGCTT 3 cut(s) 388, 398, 935
HpaII CCGG 1 cut(s) 757
HphI GGTGA 2 cut(s) 707, 1480
Hpy166II GTNNAC 6 cut(s) 265, 559, 1006, 1190, 1398, 1572
Hpy188I TCNGA 3 cut(s) 191, 550, 915
Hpy188III TCNNGA 9 cut(s) 54, 98, 323, 688, 806, 998, 1505, 1549, 1638
Hpy8I GTNNAC 6 cut(s) 265, 559, 1006, 1190, 1398, 1572
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 149, 361, 826, 920
HpyCH4III ACNGT 5 cut(s) 104, 151, 376, 576, 1010
HpyCH4IV ACGT 1 cut(s) 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 678, 863, 1160, 1265
HpyF3I CTNAG 2 cut(s) 464, 562
HpySE526I ACGT 1 cut(s) 1139
Hsp92II CATG 8 cut(s) 128, 413, 622, 741, 825, 1169, 1272, 1429
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 454, 904
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 3 cut(s) 659, 684, 1309
LweI GCATC 1 cut(s) 56
MaeI CTAG 4 cut(s) 71, 854, 1031, 1482
MaeII ACGT 1 cut(s) 1139
MaeIII GTNAC 3 cut(s) 4, 608, 772
MalI GATC 2 cut(s) 456, 906
MbiI CCGCTC 1 cut(s) 931
MboI GATC 2 cut(s) 454, 904
MhlI GDGCHC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 251, 769, 1101
MnlI CCTC 7 cut(s) 297, 330, 357, 1411, 1501, 1511, 1528
Mph1103I ATGCAT 2 cut(s) 515, 1274
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 1 cut(s) 757
MspR9I CCNGG 1 cut(s) 758
Mva1269I GAATGC 2 cut(s) 1272, 1592
MwoI GCNNNNNNNGC 4 cut(s) 678, 863, 1160, 1265
NciI CCSGG 1 cut(s) 758
NdeI CATATG 1 cut(s) 949
NdeII GATC 2 cut(s) 454, 904
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 8 cut(s) 128, 413, 622, 741, 825, 1169, 1272, 1429
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 4, 608, 772
NsiI ATGCAT 2 cut(s) 515, 1274
NspI RCATGY 2 cut(s) 825, 1272
PaeI GCATGC 2 cut(s) 825, 1272
PctI GAATGC 2 cut(s) 1272, 1592
PfeI GAWTC 7 cut(s) 85, 94, 192, 662, 1376, 1485, 1619
PkrI GCNGC 3 cut(s) 649, 674, 1299
PleI GAGTC 3 cut(s) 250, 769, 1101
PpsI GAGTC 3 cut(s) 250, 769, 1101
PshBI ATTAAT 2 cut(s) 338, 1053
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 180
RsaI GTAC 3 cut(s) 523, 560, 1495
RsaNI GTAC 3 cut(s) 522, 559, 1494
RseI CAYNNNNRTG 1 cut(s) 617
SatI GCNGC 3 cut(s) 648, 673, 1298
Sau3AI GATC 2 cut(s) 454, 904
SchI GAGTC 3 cut(s) 251, 769, 1101
ScrFI CCNGG 1 cut(s) 758
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 56
SmiI ATTTAAAT 1 cut(s) 1147
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 991, 1505
SmoI CTYRAG 2 cut(s) 991, 1505
SpeI ACTAGT 1 cut(s) 1030
SphI GCATGC 2 cut(s) 825, 1272
SsiI CCGC 3 cut(s) 32, 114, 931
SspMI CTAG 4 cut(s) 71, 854, 1031, 1482
StyD4I CCNGG 1 cut(s) 756
StyI CCWWGG 2 cut(s) 472, 972
SwaI ATTTAAAT 1 cut(s) 1147
TaaI ACNGT 5 cut(s) 104, 151, 376, 576, 1010
TaiI ACGT 1 cut(s) 1142
TaqI TCGA 2 cut(s) 716, 1183
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 7 cut(s) 85, 94, 192, 662, 1376, 1485, 1619
TscAI CASTG 2 cut(s) 492, 1318
TseFI GTSAC 3 cut(s) 4, 608, 772
TseI GCWGC 3 cut(s) 647, 672, 1297
Tsp45I GTSAC 3 cut(s) 4, 608, 772
TspGWI ACGGA 1 cut(s) 868
TspRI CASTG 2 cut(s) 492, 1318
VspI ATTAAT 2 cut(s) 338, 1053
XapI RAATTY 3 cut(s) 602, 761, 916
XceI RCATGY 2 cut(s) 825, 1272
XmiI GTMKAC 1 cut(s) 1571
XspI CTAG 4 cut(s) 71, 854, 1031, 1482
Zsp2I ATGCAT 2 cut(s) 515, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.